+D GENES KO
#
KEGG Orthology (KO) - Candidatus Midichloria mitochondrii
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:mmn00010]
D midi_00765 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D midi_00319 glpX; fructose-1,6-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D midi_01039 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D midi_00286 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D midi_01097 gapA; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D midi_01098 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D midi_00432 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D midi_00250 ppsA; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D midi_00053 acoA; pyruvate dehydrogenase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D midi_00054 acoB; pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D midi_00077 aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:mmn00020]
D midi_00893 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D midi_00310 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D midi_00671 leuB; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D midi_00688 sucA; alpha-ketoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D midi_00690 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00873 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D midi_00874 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D midi_00994 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D midi_00133 sdhB; succinate dehydrogenase/fumarate reductase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D midi_00996 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D midi_00995 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D midi_00835 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D midi_00053 acoA; pyruvate dehydrogenase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D midi_00054 acoB; pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D midi_00077 aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:mmn00030]
D midi_00765 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D midi_00005 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D midi_01254 putative sugar phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D midi_01039 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D midi_00319 glpX; fructose-1,6-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
C 00040 Pentose and glucuronate interconversions
D midi_00749 galU; UTP glucose 1 phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
C 00051 Fructose and mannose metabolism [PATH:mmn00051]
D midi_00959 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D midi_00319 glpX; fructose-1,6-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D midi_01039 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D midi_00286 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D midi_01254 putative sugar phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism
D midi_00749 galU; UTP glucose 1 phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:mmn00500]
D midi_00749 galU; UTP glucose 1 phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D midi_00527 bglX; beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D midi_00612 glycosyl hydrolase, family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D midi_00765 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:mmn00520]
D midi_00627 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D midi_00748 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D midi_00816 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D midi_00747 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D midi_01187 aminoglycoside phosphotransferase putative K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D midi_01188 nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D midi_01110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D midi_00746 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D midi_00749 galU; UTP glucose 1 phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D midi_00765 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D midi_00959 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00620 Pyruvate metabolism [PATH:mmn00620]
D midi_00053 acoA; pyruvate dehydrogenase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D midi_00054 acoB; pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D midi_00077 aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00958 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D midi_00835 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D midi_00250 ppsA; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:mmn00630]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D midi_00893 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D midi_00310 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D midi_00585 pcca-1; propionyl-CoA carboxylase alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D midi_00723 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D midi_00856 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00070 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:mmn00640]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00585 pcca-1; propionyl-CoA carboxylase alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D midi_00723 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D midi_00874 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D midi_00873 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:mmn00650]
D midi_00997 Putative poly-beta-hydroxybutyrate synthase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D midi_00994 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D midi_00133 sdhB; succinate dehydrogenase/fumarate reductase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D midi_00996 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D midi_00995 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
C 00660 C5-Branched dibasic acid metabolism
D midi_00874 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D midi_00873 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:mmn00562]
D midi_01023 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D midi_00286 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:mmn00190]
D midi_00887 nuoA; NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D midi_00888 nuoB; NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D midi_00118 nuoC; NADH:ubiquinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D midi_00110 nuoD; NADH:ubiquinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D midi_00109 nuoE; NADH:ubiquinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D midi_01026 nuoF; NADH dehydrogenase I subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D midi_01170 nuoG; NADH:ubiquinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D midi_00978 nuoH; NADH dehydrogenase I subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D midi_01040 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D midi_00115 nuoJ; NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D midi_00114 nuoK; NADH:ubiquinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D midi_00113 nuoL; NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D midi_00112 nuoM; NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D midi_00111 nuoN; NADH:ubiquinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D midi_00994 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D midi_00133 sdhB; succinate dehydrogenase/fumarate reductase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D midi_00996 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D midi_00995 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D midi_01242 ubiquinol-cytochrome c reductase iron-sulfur subunit OS K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D midi_01241 qcrB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D midi_00891 cYT1; cytochrome c1 heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D midi_01174 ccoN; Cbb3-type cytochrome oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D midi_01172 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D midi_01171 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D midi_00095 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D midi_00096 appB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D midi_00683 putative cytochrome C transmembrane protein K08738 CYC; cytochrome c
D midi_01119 atpA; F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D midi_01117 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D midi_01118 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D midi_01120 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D midi_01116 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D midi_00086 atpB; F0F1-type ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D midi_00083 F0F1-type ATP synthase subunit b' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D midi_00084 atpF; F0F1-type ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D midi_00085 atpE; F0F1-type ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D midi_00637 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:mmn00710]
D midi_01098 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D midi_01097 gapA; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D midi_01039 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D midi_00319 glpX; fructose-1,6-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D midi_01254 putative sugar phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D midi_00286 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D midi_00005 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D midi_00250 ppsA; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D midi_00958 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:mmn00720]
D midi_00250 ppsA; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D midi_00835 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D midi_00994 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D midi_00133 sdhB; succinate dehydrogenase/fumarate reductase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D midi_00996 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D midi_00995 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D midi_00873 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D midi_00874 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D midi_00671 leuB; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D midi_00310 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D midi_00572 folD; methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
C 00680 Methane metabolism [PATH:mmn00680]
D midi_00070 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D midi_01039 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D midi_00319 glpX; fructose-1,6-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D midi_00432 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
C 00910 Nitrogen metabolism [PATH:mmn00910]
D midi_00639 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00371 cynT; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:mmn00061]
D midi_01095 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D midi_00231 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D midi_01096 fabB; 3-oxoacyl-[acyl carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D midi_01201 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D midi_00975 fabA; 3-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D midi_00384 fabI; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:mmn00561]
D midi_00232 plsX; putative glycerol-3-phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D midi_00840 uncharacterized protein conserved in bacteria K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D midi_00795 plsC; 1-Acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:mmn00564]
D midi_00920 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D midi_00840 uncharacterized protein conserved in bacteria K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D midi_00795 plsC; 1-Acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D midi_00752 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D midi_00479 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D midi_00382 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D midi_00273 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D midi_00517 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:mmn01040]
D midi_00402 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:mmn00230]
D midi_00515 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D midi_00098 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D midi_00192 gmk; guanylate kinase Gmk K00942 gmk; guanylate kinase [EC:2.7.4.8]
D midi_00359 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D midi_00481 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D midi_00645 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D midi_00611 spoT; SpoT guanosine polyphosphate pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D midi_00646 putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D midi_00044 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:mmn00240]
D midi_00656 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D midi_00098 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D midi_00971 maf; septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D midi_00708 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D midi_00584 cmK; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D midi_00359 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D midi_00481 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D midi_00854 comEB; deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D midi_00216 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D midi_01135 putative deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D midi_00610 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:mmn00250]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D midi_00639 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00627 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C 00260 Glycine, serine and threonine metabolism [PATH:mmn00260]
D midi_00940 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00489 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00488 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D midi_00070 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D midi_00432 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D midi_00769 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00479 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
C 00270 Cysteine and methionine metabolism [PATH:mmn00270]
D midi_01197 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D midi_00515 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D midi_00940 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00489 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00488 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D midi_00491 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00593 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00348 gshA; glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D midi_00193 rimK; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D midi_00923 mdh; malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00280 Valine, leucine and isoleucine degradation [PATH:mmn00280]
D midi_00491 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00593 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00585 pcca-1; propionyl-CoA carboxylase alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D midi_00723 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:mmn00290]
D midi_00491 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00593 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:mmn00300]
D midi_00940 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00489 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00488 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D midi_00300 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D midi_00301 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D midi_00297 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D midi_00962 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D midi_00492 putative diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D midi_00217 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D midi_00017 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:mmn00310]
D midi_00690 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:mmn00220]
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00639 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:mmn00330]
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:mmn00350]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00360 Phenylalanine metabolism [PATH:mmn00360]
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism [PATH:mmn00380]
D midi_00690 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_01220 putative amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:mmn00400]
D midi_01163 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism
D midi_00639 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
D midi_00866 phnP; metal-dependent hydrolases of the beta-lactamase superfamily I K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:mmn00450]
D midi_00852 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D midi_00573 ferredoxin--NADP+ reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D midi_00292 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:mmn00460]
D midi_00527 bglX; beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D midi_00070 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:mmn00470]
D midi_00208 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D midi_01206 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D midi_00431 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D midi_00492 putative diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:mmn00480]
D midi_00348 gshA; glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D midi_00193 rimK; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D midi_00198 pepB; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D midi_00350 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D midi_00671 leuB; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:mmn00540]
D midi_00974 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D midi_00174 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D midi_00973 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D midi_00675 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D midi_00486 lpxK; tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D midi_00650 gutQ; D-arabinose 5-phosphate K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D midi_00673 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D midi_00678 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D midi_00881 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:mmn00541]
D midi_00749 galU; UTP glucose 1 phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D midi_00959 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D midi_00816 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:mmn00550]
D midi_01110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D midi_00746 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D midi_00985 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D midi_00431 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D midi_00217 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D midi_01206 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D midi_00017 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D midi_00751 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D midi_00430 nitrogen regulator protein K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D midi_01141 N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D midi_00540 mrcA; penicillin-binding protein 1a K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_01027 mrcB; membrane carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_00438 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D midi_00641 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D midi_00838 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D midi_00858 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:mmn00730]
D midi_00282 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00283 nifS; cysteine desulfurase 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00719 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D midi_00044 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:mmn00740]
D midi_00862 ribH; riboflavin synthase beta-chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D midi_00410 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:mmn00760]
D midi_00435 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D midi_00159 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D midi_00516 uncharacterized protein conserved in bacteria K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D midi_01057 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:mmn00770]
D midi_00315 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D midi_00327 dfp; bifuctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D midi_00812 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D midi_01005 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D midi_01019 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D midi_00491 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00593 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:mmn00780]
D midi_00122 Biotin biosynthesis protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D midi_01096 fabB; 3-oxoacyl-[acyl carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D midi_01201 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D midi_00975 fabA; 3-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D midi_00384 fabI; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D midi_00125 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D midi_00460 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D midi_00121 bioD; Dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D midi_00126 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D midi_00316 birA; biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:mmn00785]
D midi_01196 lipB; lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D midi_00422 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00053 acoA; pyruvate dehydrogenase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D midi_00054 acoB; pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D midi_00077 aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D midi_00688 sucA; alpha-ketoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D midi_00690 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:mmn00790]
D midi_00987 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D midi_01001 floB; putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D midi_00936 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D midi_00935 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D midi_00672 folC; folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D midi_00392 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D midi_01136 organic radical activating protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D midi_00194 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D midi_01078 NADPH dependent 7 cyano 7 deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:mmn00670]
D midi_00572 folD; methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D midi_00070 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D midi_00913 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D midi_00610 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D midi_00467 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:mmn00860]
D midi_00769 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D midi_00961 glnS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00718 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00106 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D midi_00609 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D midi_01093 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D midi_00247 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D midi_00205 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D midi_00326 putative integral membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D midi_00814 hemH; Protoheme ferro-lyase (ferrochelatase) K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:mmn00130]
D midi_00117 ubiA; 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D midi_00199 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D midi_00215 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D midi_00883 ubiE; methylase involved in ubiquinone/menaquinone biosynthesis K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D midi_00682 cAT5; ubiquinone biosynthesis protein coq7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:mmn00900]
D midi_00719 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D midi_00753 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D midi_00190 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D midi_01008 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D midi_00351 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D midi_00712 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D midi_00751 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:mmn00946]
D midi_00527 bglX; beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:mmn00261]
D midi_00940 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00489 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D midi_00488 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D midi_00300 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D midi_00301 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D midi_01023 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D midi_01201 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D midi_00384 fabI; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D midi_01095 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:mmn00999]
D midi_01197 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D midi_00527 bglX; beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:mmn03020]
D midi_00505 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D midi_00506 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D midi_00046 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D midi_00010 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:mmn03010]
D midi_00583 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D midi_00658 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D midi_00029 rpsC; ribosomal protein L16 K02982 RP-S3; small subunit ribosomal protein S3
D midi_00223 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D midi_00040 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D midi_00007 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D midi_00823 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D midi_00037 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D midi_00908 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D midi_00022 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D midi_00822 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D midi_00036 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D midi_00454 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D midi_00364 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D midi_00032 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D midi_00008 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D midi_00027 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D midi_00353 rpsT; ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D midi_00501 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D midi_00026 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D midi_00023 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D midi_00024 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D midi_00035 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D midi_00038 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D midi_00504 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D midi_00009 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D midi_00503 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D midi_00500 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D midi_00909 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D midi_00033 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D midi_00042 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D midi_00030 rplP; ribosomal protein S10 K02878 RP-L16; large subunit ribosomal protein L16
D midi_00047 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D midi_00039 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D midi_00544 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D midi_00563 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D midi_00270 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D midi_00028 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D midi_00025 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D midi_00034 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D midi_00207 rplY; ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D midi_00269 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D midi_01056 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D midi_00031 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D midi_00041 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D midi_00536 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D midi_00233 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D midi_01250 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D midi_01062 rpmH; ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D midi_00562 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D midi_01195 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D midi_00228 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D midi_00832 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D midi_00831 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:mmn00970]
D midi_00726 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D midi_00630 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D midi_00289 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00196 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00550 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00152 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00696 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D midi_00298 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D midi_00405 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D midi_00243 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D midi_00706 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D midi_00559 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D midi_00629 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D midi_00105 tRNA-His K14226 tRNA-His; tRNA His
D midi_00268 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D midi_00188 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00510 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00861 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00069 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00890 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D midi_00889 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00093 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00599 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D midi_00926 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D midi_01009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_01140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_00421 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_00859 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00413 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00081 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00561 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D midi_00558 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D midi_00299 tRNA-Val K14237 tRNA-Val; tRNA Val
D midi_01227 tRNA-Val K14237 tRNA-Val; tRNA Val
D midi_00961 glnS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00718 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00836 gatA; glutamyl-tRNA amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D midi_00679 gatB; aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D midi_00552 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D midi_01122 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D midi_01018 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D midi_00828 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D midi_00495 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D midi_00143 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D midi_00396 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D midi_00784 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D midi_00292 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D midi_00913 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D midi_00998 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D midi_01011 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D midi_00103 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D midi_01182 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D midi_00801 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D midi_00767 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D midi_00427 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D midi_00234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D midi_01079 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D midi_00478 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:mmn03060]
D midi_00043 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D midi_00498 preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D midi_00709 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D midi_00169 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D midi_01108 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D midi_00885 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D midi_01064 yidC; putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D midi_00255 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D midi_00367 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D midi_00847 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D midi_00151 signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D midi_00395 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D midi_01058 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D midi_00602 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:mmn04122]
D midi_00282 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00283 nifS; cysteine desulfurase 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_01065 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:mmn03018]
D midi_00534 putative hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D midi_01107 cafA; ribonuclease Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D midi_00455 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D midi_00191 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D midi_00184 putative hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D midi_01215 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D midi_01192 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D midi_00901 pcnB; polyApolymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:mmn03030]
D midi_01006 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D midi_00357 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D midi_00879 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D midi_00156 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D midi_00640 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D midi_01164 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D midi_00248 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D midi_01013 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_01043 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D midi_00388 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:mmn03410]
D midi_00275 nth; endonucleaseIII K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D midi_00257 nei; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D midi_00471 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D midi_00476 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D midi_00921 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:mmn03420]
D midi_00695 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D midi_01033 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D midi_00272 uvrC; excinuclease UvrABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C
D midi_00750 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:mmn03430]
D midi_00595 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D midi_00333 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D midi_00750 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D midi_00945 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D midi_00649 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D midi_00921 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_00357 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D midi_01164 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D midi_00879 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D midi_00156 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D midi_01006 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D midi_00640 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D midi_01224 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00730 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:mmn03440]
D midi_00921 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_01165 recombination protein F K03629 recF; DNA replication and repair protein RecF
D midi_00320 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D midi_00135 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR
D midi_00249 recA; recombinase A K03553 recA; recombination protein RecA
D midi_00068 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D midi_01248 holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D midi_00221 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D midi_00570 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D midi_00357 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D midi_01164 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D midi_00879 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D midi_00156 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D midi_01006 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D midi_00640 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D midi_00227 putative primosomal assembly protein priA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:mmn02010]
D midi_00416 toluene tolerance transporter, putative K07323 mlaC; phospholipid transport system substrate-binding protein
D midi_00451 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D midi_00209 ttg2B; ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D midi_00210 ttg2A; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D midi_01080 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D midi_01249 lolD; lipoprotein-releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D midi_00245 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D midi_00306 ccmA; cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D midi_00167 hypothetical transmembrane protein K07091 lptF; lipopolysaccharide export system permease protein
D midi_00943 predicted permease K11720 lptG; lipopolysaccharide export system permease protein
D midi_00218 yhbG; ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D midi_01106 msbA; ABC type multidrug transport system K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D midi_00601 arpD; alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D midi_00256 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:mmn03070]
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00169 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D midi_01108 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D midi_00498 preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D midi_00709 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D midi_00043 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D midi_00885 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D midi_01064 yidC; putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D midi_00255 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D midi_00151 signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D midi_00367 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D midi_00847 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D midi_00395 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D midi_00711 virB2; type IV secretion system protein VirB2 K03197 virB2; type IV secretion system protein VirB2
D midi_00895 putative type IV secretion system protein K03204 virB9; type IV secretion system protein VirB9
D midi_00700 putative type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D midi_00788 putative type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D midi_00447 virB8; type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8
D midi_00896 putative type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D midi_00445 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D midi_00295 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D midi_00444 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D midi_00443 virD4; type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:mmn02020]
D midi_00834 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D midi_00463 baeS; signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D midi_00551 ompR; two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D midi_00976 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D midi_00596 fliC; flagellin fliC K02406 fliC; flagellin
D midi_00970 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D midi_00465 motA; flagellar motor protein MotA duplicate K02556 motA; chemotaxis protein MotA
D midi_00001 dnaA; chromosomal replication initiation protein dnaA K02313 dnaA; chromosomal replication initiator protein
D midi_00429 ddpX; D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D midi_00309 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00664 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D midi_00433 phosphoglycerate mutase K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D midi_00509 transcriptional regulator FlbD K07713 zraR; two-component system, NtrC family, response regulator HydG
D midi_00411 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D midi_01242 ubiquinol-cytochrome c reductase iron-sulfur subunit OS K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D midi_01241 qcrB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D midi_00891 cYT1; cytochrome c1 heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D midi_00683 putative cytochrome C transmembrane protein K08738 CYC; cytochrome c
D midi_01174 ccoN; Cbb3-type cytochrome oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D midi_01172 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D midi_01171 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D midi_00095 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D midi_00096 appB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00612 glycosyl hydrolase, family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D midi_01242 ubiquinol-cytochrome c reductase iron-sulfur subunit OS K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:mmn02024]
D midi_01064 yidC; putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D midi_00498 preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D midi_00709 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D midi_00043 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D midi_00885 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D midi_00255 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D midi_00151 signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D midi_00367 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D midi_00847 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:mmn02030]
D midi_00407 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D midi_00742 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D midi_00409 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D midi_00970 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D midi_00465 motA; flagellar motor protein MotA duplicate K02556 motA; chemotaxis protein MotA
D midi_00969 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:mmn02040]
D midi_00002 fliE; flagellar hook-basal body protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D midi_00406 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D midi_00407 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D midi_00408 fliH; flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D midi_01123 fliI; flagellar biosynthesis/type III secretory pathway ATPase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D midi_00741 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D midi_00742 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D midi_00409 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D midi_00441 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D midi_00308 fliR; flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D midi_00274 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D midi_00307 flhB; flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D midi_00138 flgA; flagellar basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D midi_00004 hypothetical protein K02387 flgB; flagellar basal-body rod protein FlgB
D midi_00003 flgC; flagellar basal body rod flgC K02388 flgC; flagellar basal-body rod protein FlgC
D midi_01126 flgD; flagellar hook capping protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D midi_01031 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D midi_00136 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D midi_00137 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D midi_00139 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D midi_01077 flgI; flagellar basal-body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D midi_01074 flgK; flagellar hook-associated protein FlgK putative K02396 flgK; flagellar hook-associated protein 1
D midi_00596 fliC; flagellin fliC K02406 fliC; flagellin
D midi_00970 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D midi_00465 motA; flagellar motor protein MotA duplicate K02556 motA; chemotaxis protein MotA
D midi_00969 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D midi_01012 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D midi_00411 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:mmn01501]
D midi_00197 MFS transporter protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00540 mrcA; penicillin-binding protein 1a K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_01027 mrcB; membrane carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_00438 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D midi_00641 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:mmn01502]
D midi_00429 ddpX; D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D midi_01206 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D midi_00208 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D midi_00017 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D midi_00430 nitrogen regulator protein K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D midi_01141 N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:mmn01503]
D midi_00976 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00974 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:mmn01000]
C 01001 Protein kinases [BR:mmn01001]
D midi_00463 baeS; signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D midi_00664 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:mmn01009]
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:mmn01002]
D midi_00602 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D midi_01161 predicted glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D midi_01162 predicted glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D midi_00627 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D midi_00429 ddpX; D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D midi_00198 pepB; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D midi_00962 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D midi_00160 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D midi_00362 ftsH; cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D midi_00175 putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D midi_00976 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D midi_00341 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D midi_00838 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D midi_00858 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D midi_00778 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D midi_00436 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D midi_01058 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D midi_01044 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D midi_00882 putative peptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D midi_00477 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D midi_00773 hflC; Hflc protein K04087 hflC; modulator of FtsH protease HflC
D midi_00774 probable integral membrane proteinase K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:mmn01003]
D midi_00540 mrcA; penicillin-binding protein 1a K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_01027 mrcB; membrane carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:mmn01005]
D midi_00974 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D midi_00675 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D midi_00174 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D midi_00352 putative phosphatidic acid phosphatase PAP2 superfamily protein K12978 lpxF; lipid A 4'-phosphatase [EC:3.1.3.-]
D midi_00973 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D midi_00486 lpxK; tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D midi_00881 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D midi_00673 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D midi_00678 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D midi_00650 gutQ; D-arabinose 5-phosphate K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D midi_01004 glycosyl transferase, family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:mmn01011]
D midi_01110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D midi_00746 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D midi_00985 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D midi_00431 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D midi_00217 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D midi_01206 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D midi_00208 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D midi_00882 putative peptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D midi_00430 nitrogen regulator protein K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D midi_01141 N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D midi_00480 virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D midi_00540 mrcA; penicillin-binding protein 1a K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_01027 mrcB; membrane carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D midi_00438 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D midi_00641 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D midi_00838 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D midi_00858 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D midi_00429 ddpX; D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D midi_00116 lytic murein transglycosylase family protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D midi_00369 membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D midi_00946 pabC; aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:mmn01004]
D midi_00231 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D midi_01096 fabB; 3-oxoacyl-[acyl carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D midi_01201 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D midi_00975 fabA; 3-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D midi_00384 fabI; enoyl-(acyl-carrier-protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D midi_00402 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D midi_00232 plsX; putative glycerol-3-phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D midi_00840 uncharacterized protein conserved in bacteria K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D midi_00795 plsC; 1-Acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:mmn01006]
D midi_00712 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D midi_00751 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D midi_00200 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D midi_00117 ubiA; 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:mmn01007]
D midi_00103 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D midi_00961 glnS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00718 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_01079 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D midi_00478 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D midi_00784 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D midi_01182 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D midi_00292 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D midi_01011 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D midi_00998 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D midi_01018 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D midi_00767 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D midi_00828 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D midi_00495 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D midi_00396 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D midi_00801 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D midi_00143 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D midi_01122 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D midi_00427 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D midi_00234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D midi_00871 aspB; aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D midi_00769 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D midi_00125 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D midi_00460 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D midi_00491 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D midi_00593 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:mmn00194]
D midi_01116 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D midi_01117 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D midi_01118 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D midi_01119 atpA; F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D midi_01120 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D midi_00083 F0F1-type ATP synthase subunit b' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D midi_00084 atpF; F0F1-type ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D midi_00085 atpE; F0F1-type ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D midi_00086 atpB; F0F1-type ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D midi_00087 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:mmn03000]
D midi_00462 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D midi_00316 birA; biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D midi_00237 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D midi_00597 Transcription factor CarD-like protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D midi_00204 Uncharacterized protein conserved in bacteria K07735 algH; putative transcriptional regulator
D midi_00134 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D midi_01142 predicted transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D midi_00644 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:mmn03021]
D midi_00046 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D midi_00505 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D midi_00506 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D midi_00010 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D midi_01012 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D midi_00735 rpoH; DNA-directed RNA polymerase subunit H K03089 rpoH; RNA polymerase sigma-32 factor
D midi_00411 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D midi_00473 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D midi_00863 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D midi_00499 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D midi_00134 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D midi_00195 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D midi_00191 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:mmn03019]
D midi_01107 cafA; ribonuclease Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D midi_01059 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D midi_00184 putative hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D midi_00455 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D midi_00191 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D midi_01215 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D midi_01192 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D midi_00901 pcnB; polyApolymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D midi_00534 putative hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D midi_00309 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:mmn03011]
D midi_00583 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D midi_00658 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D midi_00029 rpsC; ribosomal protein L16 K02982 RP-S3; small subunit ribosomal protein S3
D midi_00223 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D midi_00040 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D midi_00007 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D midi_00823 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D midi_00037 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D midi_00908 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D midi_00022 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D midi_00822 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D midi_00036 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D midi_00454 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D midi_00364 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D midi_00032 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D midi_00008 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D midi_00027 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D midi_00353 rpsT; ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D midi_00501 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D midi_00026 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D midi_00023 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D midi_00024 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D midi_00035 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D midi_00038 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D midi_00009 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D midi_00503 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D midi_00500 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D midi_00504 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D midi_00909 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D midi_00033 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D midi_00042 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D midi_00030 rplP; ribosomal protein S10 K02878 RP-L16; large subunit ribosomal protein L16
D midi_00047 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D midi_00039 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D midi_00544 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D midi_00563 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D midi_00270 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D midi_00028 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D midi_00025 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D midi_00034 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D midi_00269 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D midi_01056 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D midi_00031 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D midi_00041 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D midi_00536 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D midi_00233 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D midi_01250 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D midi_01062 rpmH; ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D midi_00562 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D midi_01195 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D midi_00207 rplY; ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D midi_00831 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D midi_00228 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D midi_00832 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:mmn03009]
D midi_01059 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D midi_01060 GTP-binding protein Era K03595 era; GTPase
D midi_00147 obg; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D midi_00134 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D midi_00473 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D midi_00863 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D midi_00499 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D midi_00594 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D midi_00358 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D midi_00349 rsmE; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D midi_00643 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D midi_00799 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D midi_00329 spoU; RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D midi_00839 ftsJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D midi_00813 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D midi_01143 rluA; ribosomal large subunit pseudouridine synthase RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D midi_01107 cafA; ribonuclease Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D midi_00240 holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D midi_00400 GTP-binding protein K03977 engA; GTPase
D midi_00697 putative yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D midi_00611 spoT; SpoT guanosine polyphosphate pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D midi_00313 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D midi_00474 Uncharacterized protein conserved in bacteria K09748 rimP; ribosome maturation factor RimP
D midi_00434 putative iojap-related protein K09710 ybeB; ribosome-associated protein
D midi_00525 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
D midi_01017 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:mmn03016]
D midi_00961 glnS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00718 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00801 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D midi_01011 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D midi_00998 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D midi_00292 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D midi_01182 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D midi_01018 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D midi_01122 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D midi_00143 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D midi_00396 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D midi_00784 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D midi_00767 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D midi_00427 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D midi_00234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D midi_01079 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D midi_00478 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D midi_00876 histidine triad (HIT) family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D midi_00071 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D midi_00461 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D midi_00453 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D midi_00282 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00283 nifS; cysteine desulfurase 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00697 putative yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D midi_00200 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D midi_00345 tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D midi_00239 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D midi_00386 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D midi_01015 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D midi_00103 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D midi_00828 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D midi_00495 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D midi_01038 cumB; CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D midi_00094 tRNA-I(6)A37 thiotransferase enzyme K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D midi_00267 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D midi_00456 lasT; RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D midi_00543 trmD; tRNA (guanine-N1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D midi_01065 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D midi_00280 iscA; iron sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D midi_01169 aminomethyl transferase family protein, putative K06980 ygfZ; tRNA-modifying protein YgfZ
D midi_00531 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D midi_00194 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D midi_00392 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D midi_01136 organic radical activating protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D midi_01078 NADPH dependent 7 cyano 7 deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D midi_00180 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D midi_00214 mesJ; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D midi_00100 putative glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D midi_00802 putative DNA-binding/iron metalloprotein/AP endonuclease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D midi_00988 Predicted ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D midi_00455 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:mmn03012]
D midi_00472 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D midi_00144 infC; translation initiation factor K02520 infC; translation initiation factor IF-3
D midi_00657 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D midi_00560 tufB; translation elongation factor Tu K02358 tuf; elongation factor Tu
D midi_00824 fusA; elongation factor G K02355 fusA; elongation factor G
D midi_00667 prfA; protein chain release factor A K02835 prfA; peptide chain release factor 1
D midi_00655 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D midi_00468 hemK; modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D midi_01016 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D midi_00972 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D midi_00128 efp; Translation elongation factor P K02356 efp; elongation factor P
D midi_01111 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:mmn03110]
D midi_00950 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D midi_00779 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D midi_00018 hslU; ATP-dependent protease HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
D midi_01215 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D midi_00332 hscA; chaperone protein, HscA K04044 hscA; molecular chaperone HscA
D midi_01192 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D midi_00355 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D midi_00331 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D midi_00922 grpE; molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D midi_01191 groS; chaperonin GroS K04078 groES; chaperonin GroES
D midi_00976 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D midi_00362 ftsH; cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D midi_00086 atpB; F0F1-type ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D midi_00367 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D midi_00179 peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D midi_00590 surA; PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D midi_01204 thioredoxin K03671 TXN; thioredoxin
D midi_00130 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking [BR:mmn04131]
D midi_00098 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D midi_01097 gapA; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:mmn03051]
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:mmn03032]
D midi_01043 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D midi_00335 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D midi_00519 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D midi_00528 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D midi_00569 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D midi_00001 dnaA; chromosomal replication initiation protein dnaA K02313 dnaA; chromosomal replication initiator protein
D midi_00248 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D midi_01013 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_00357 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D midi_01164 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D midi_00640 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D midi_00156 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D midi_01006 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D midi_00879 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D midi_00388 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D midi_01224 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00730 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00373 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D midi_01091 gyrB; gyrase subunit beta K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D midi_01035 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:mmn03036]
D midi_01059 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D midi_00335 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D midi_00519 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D midi_00528 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D midi_00569 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D midi_00001 dnaA; chromosomal replication initiation protein dnaA K02313 dnaA; chromosomal replication initiator protein
D midi_01207 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D midi_00641 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D midi_00508 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D midi_00642 secreted (periplasmic) protein-like protein K03586 ftsL; cell division protein FtsL
D midi_00617 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D midi_00222 ftsZ; FtsZ, Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D midi_01202 AFG1-like ATPase K06916 zapE; cell division protein ZapE
D midi_00185 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D midi_00423 mreC; putative rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D midi_00668 rodA; rod shape determining protein rodA K05837 rodA; rod shape determining protein RodA
D midi_00766 soj; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D midi_00238 putative ATPase involved in cell division K03496 parA; chromosome partitioning protein
D midi_00237 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D midi_00239 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D midi_00804 xerC; integrase xerC K03733 xerC; integrase/recombinase XerC
D midi_01014 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D midi_00776 putative ATP binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D midi_01025 engB; GTPase EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:mmn03400]
D midi_00275 nth; endonucleaseIII K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D midi_01135 putative deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D midi_00471 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D midi_00257 nei; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D midi_00476 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D midi_00921 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D midi_01121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D midi_00695 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D midi_01033 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D midi_00272 uvrC; excinuclease UvrABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C
D midi_00750 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D midi_00505 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D midi_00506 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D midi_00046 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D midi_00010 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D midi_00595 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D midi_00333 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D midi_00945 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D midi_00649 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D midi_00357 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D midi_01164 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D midi_00640 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D midi_00156 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D midi_01006 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D midi_00879 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_01224 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00730 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00249 recA; recombinase A K03553 recA; recombination protein RecA
D midi_00068 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D midi_01248 holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D midi_00221 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D midi_00227 putative primosomal assembly protein priA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D midi_01233 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D midi_01165 recombination protein F K03629 recF; DNA replication and repair protein RecF
D midi_00570 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D midi_00320 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D midi_00135 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR
D midi_00201 addA; double-strand break repair helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D midi_00322 uncharacterized protein conserved in bacteria K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D midi_00373 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D midi_01091 gyrB; gyrase subunit beta K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D midi_01035 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D midi_00335 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D midi_00519 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D midi_00528 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D midi_00569 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D midi_00359 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D midi_00481 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:mmn03029]
D midi_01241 qcrB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D midi_00472 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D midi_00144 infC; translation initiation factor K02520 infC; translation initiation factor IF-3
D midi_00657 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D midi_00560 tufB; translation elongation factor Tu K02358 tuf; elongation factor Tu
D midi_00824 fusA; elongation factor G K02355 fusA; elongation factor G
D midi_01060 GTP-binding protein Era K03595 era; GTPase
D midi_01079 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D midi_00998 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D midi_01018 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D midi_01182 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D midi_00836 gatA; glutamyl-tRNA amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D midi_00679 gatB; aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D midi_00552 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D midi_00535 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D midi_00176 bacterial surface antigen K07277 SAM50; outer membrane protein insertion porin family
D midi_01215 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D midi_00922 grpE; molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D midi_01192 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D midi_01191 groS; chaperonin GroS K04078 groES; chaperonin GroES
D midi_00355 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D midi_00282 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00283 nifS; cysteine desulfurase 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00331 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D midi_00130 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D midi_00897 hypothetical protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D midi_00776 putative ATP binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D midi_01064 yidC; putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:mmn02000]
D midi_01106 msbA; ABC type multidrug transport system K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D midi_00977 mdlB; ABC efflux transporter permease/ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D midi_01200 putative ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D midi_00601 arpD; alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D midi_00256 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D midi_00451 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D midi_00209 ttg2B; ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D midi_00210 ttg2A; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D midi_00416 toluene tolerance transporter, putative K07323 mlaC; phospholipid transport system substrate-binding protein
D midi_00482 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D midi_00483 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D midi_00484 putative ABC transporter K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D midi_01002 hisJ; amino-acid ABC transporter binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D midi_00548 glnP; glutamine transport system permease protein GlnP K02029 ABC.PA.P; polar amino acid transport system permease protein
D midi_00547 putative amino acid ABC transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D midi_00167 hypothetical transmembrane protein K07091 lptF; lipopolysaccharide export system permease protein
D midi_00943 predicted permease K11720 lptG; lipopolysaccharide export system permease protein
D midi_00218 yhbG; ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D midi_01080 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D midi_01249 lolD; lipoprotein-releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D midi_00245 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D midi_00306 ccmA; cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D midi_00843 proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D midi_00197 MFS transporter protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D midi_00783 MFS-type bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D midi_00350 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D midi_00342 mscS; small-conductance mechanosensitive channel K16052 ynaI; MscS family membrane protein
D midi_00970 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D midi_00465 motA; flagellar motor protein MotA duplicate K02556 motA; chemotaxis protein MotA
D midi_00969 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D midi_00520 tolQ; Tolq transport protein K03562 tolQ; biopolymer transport protein TolQ
D midi_00521 tolR; TolR biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D midi_00464 corA; magnesium cobalt transport protein K03284 corA; magnesium transporter
D midi_00635 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00176 bacterial surface antigen K07277 SAM50; outer membrane protein insertion porin family
D midi_01177 PQQ enzyme repeat family protein K17713 bamB; outer membrane protein assembly factor BamB
D midi_00984 comL; competence lipoprotein ComL K05807 bamD; outer membrane protein assembly factor BamD
D midi_00592 putative organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D midi_00523 CBS domain protein K06189 corC; hemolysin (HlyC) family protein
D midi_01007 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D midi_00663 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D midi_01081 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D midi_01082 kefB; glutathione regulate potassium efflux protein KefB K03455 KEA1_2_3; K+:H+ antiporter
D midi_00587 sdaC; amino acid permease K03834 tyrP; tyrosine-specific transport protein
D midi_00480 virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D midi_00899 putative permease K24180 mleP; malate permease and related proteins
D midi_00617 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D midi_00485 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D midi_00755 tolB; translocation protein TolB K03641 tolB; TolB protein
D midi_00389 thiol:disulfide interchange protein K08344 scsB; suppressor for copper-sensitivity B
D midi_00600 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D midi_00321 RND family efflux transporter MFP subunit K18990 vexE; membrane fusion protein, multidrug efflux system
D midi_01151 feoB; Fe2+ transport system protein B K04759 feoB; ferrous iron transport protein B
D midi_00944 ccmF; cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:mmn02044]
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
D midi_00601 arpD; alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D midi_00600 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D midi_00854 comEB; deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D midi_00274 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D midi_00307 flhB; flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D midi_00406 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D midi_00408 fliH; flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D midi_01123 fliI; flagellar biosynthesis/type III secretory pathway ATPase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D midi_00409 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D midi_00441 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D midi_00308 fliR; flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D midi_00711 virB2; type IV secretion system protein VirB2 K03197 virB2; type IV secretion system protein VirB2
D midi_00295 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D midi_00700 putative type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D midi_00788 putative type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D midi_00447 virB8; type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8
D midi_00896 putative type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D midi_00895 putative type IV secretion system protein K03204 virB9; type IV secretion system protein VirB9
D midi_00445 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D midi_00444 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D midi_00443 virD4; type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D midi_00255 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D midi_00367 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D midi_00169 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D midi_00498 preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D midi_01108 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D midi_00709 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D midi_00043 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D midi_00847 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D midi_00151 signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D midi_00885 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D midi_01064 yidC; putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D midi_00395 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:mmn02042]
D midi_00635 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:mmn02022]
D midi_00834 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D midi_00463 baeS; signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D midi_00551 ompR; two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D midi_00664 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D midi_00433 phosphoglycerate mutase K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D midi_00509 transcriptional regulator FlbD K07713 zraR; two-component system, NtrC family, response regulator HydG
C 02035 Bacterial motility proteins [BR:mmn02035]
D midi_00408 fliH; flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D midi_01123 fliI; flagellar biosynthesis/type III secretory pathway ATPase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D midi_00441 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D midi_00308 fliR; flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D midi_00274 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D midi_00307 flhB; flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D midi_00407 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D midi_00742 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D midi_00409 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D midi_00406 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D midi_01077 flgI; flagellar basal-body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D midi_00138 flgA; flagellar basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D midi_00139 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D midi_00741 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D midi_00002 fliE; flagellar hook-basal body protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D midi_00004 hypothetical protein K02387 flgB; flagellar basal-body rod protein FlgB
D midi_00003 flgC; flagellar basal body rod flgC K02388 flgC; flagellar basal-body rod protein FlgC
D midi_01126 flgD; flagellar hook capping protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D midi_00136 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D midi_00137 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D midi_01031 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D midi_01074 flgK; flagellar hook-associated protein FlgK putative K02396 flgK; flagellar hook-associated protein 1
D midi_00596 fliC; flagellin fliC K02406 fliC; flagellin
D midi_00970 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D midi_00465 motA; flagellar motor protein MotA duplicate K02556 motA; chemotaxis protein MotA
D midi_00969 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:mmn04812]
D midi_00185 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D midi_00222 ftsZ; FtsZ, Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D midi_01207 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D midi_00766 soj; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D midi_00238 putative ATPase involved in cell division K03496 parA; chromosome partitioning protein
D midi_00237 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:mmn04147]
D midi_01101 htpG; chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
D midi_00099 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D midi_01097 gapA; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D midi_01098 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D midi_00851 ahpC; peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D midi_01192 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D midi_01215 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D midi_00765 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D midi_00560 tufB; translation elongation factor Tu K02358 tuf; elongation factor Tu
D midi_00876 histidine triad (HIT) family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D midi_00044 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D midi_01032 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D midi_00106 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D midi_00692 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00078 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D midi_00286 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:mmn02048]
D midi_01224 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00730 dam; site-specific DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D midi_00222 ftsZ; FtsZ, Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D midi_00185 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D midi_00961 glnS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00718 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D midi_00282 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D midi_00283 nifS; cysteine desulfurase 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:mmn01504]
D midi_00429 ddpX; D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D midi_00050 tolC; type I secretion outer membrane protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:mmn03100]
D midi_00726 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D midi_00630 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D midi_00289 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00196 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00550 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00152 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D midi_00696 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D midi_00298 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D midi_00405 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D midi_00243 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D midi_00706 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D midi_00559 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D midi_00629 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D midi_00105 tRNA-His K14226 tRNA-His; tRNA His
D midi_00268 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D midi_00188 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00510 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00861 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00069 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D midi_00890 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D midi_00889 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00093 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00599 tRNA-Met K14230 tRNA-Met; tRNA Met
D midi_00705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D midi_00926 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D midi_01009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_01140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_00421 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D midi_00859 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00413 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00081 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D midi_00561 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D midi_00558 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D midi_00299 tRNA-Val K14237 tRNA-Val; tRNA Val
D midi_01227 tRNA-Val K14237 tRNA-Val; tRNA Val
D midi_00228 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D midi_00832 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D midi_00831 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D midi_00475 coenzyme PQQ synthesis protein C, putative K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D midi_00633 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D midi_00929 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D midi_00401 peroxiredoxin reductase K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D midi_00385 protein-L-isoaspartate carboxylmethyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D midi_01047 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D midi_00277 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D midi_00361 uncharacterized protein conserved in bacteria K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D midi_00529 tatD; Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D midi_00012 dacC; D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D midi_00870 def; N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D midi_00857 ccoI; cytochrome cbb3 oxidase maturation protein CcoI K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D midi_00860 ferredoxin II K05524 fdxA; ferredoxin
D midi_00281 iscU; FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D midi_00805 Uncharacterized protein conserved in bacteria K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D midi_00892 ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein
D midi_00161 rpsU-divergently transcribed protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D midi_01042 cyclase/dehydrase K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
D midi_00966 putative NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D midi_00616 phospholipase Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D midi_00777 tig; trigger factor Tig K03545 tig; trigger factor
D midi_00674 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
D midi_00285 putative nuclease K09760 rmuC; DNA recombination protein RmuC
D midi_00182 hypothetical protein K07460 yraN; putative endonuclease
D midi_00466 hypothetical protein K07501 K07501; 3'-5' exonuclease
C 99979 Viral proteins
C 99998 Others
D midi_00880 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D midi_00318 amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D midi_00183 ATP/ADP translocase class 1 K03301 TC.AAA; ATP:ADP antiporter, AAA family
D midi_00090 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D midi_00142 alsT; Na+/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D midi_00538 hypothetical protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D midi_01230 2-oxoglutarate/malate transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D midi_01240 typA; GTP binding protein typA K06207 typA; GTP-binding protein
C 99992 Structural proteins
D midi_00415 VacJ like lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D midi_00178 hlpA; ompH family outer membrane protein K06142 hlpA; outer membrane protein
D midi_00541 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D midi_01124 ccmH; cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D midi_01216 uncharacterized protein involved in tolerance to divalent cations K03926 cutA; periplasmic divalent cation tolerance protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D midi_01234 cvpA family protein K03558 cvpA; membrane protein required for colicin V production
D midi_00187 putative Iron sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D midi_00571 rbn; ribonuclease BN K07058 K07058; membrane protein
D midi_00636 rhodanese domain protein K07146 K07146; UPF0176 protein
C 99997 Function unknown
D midi_00992 membrane protein putative K06890 K06890; uncharacterized protein
D midi_00284 putative hydrolase K07018 K07018; uncharacterized protein
D midi_00219 TRAP-type uncharacterized transport system K07080 K07080; uncharacterized protein
D midi_00131 membrane protein K07090 K07090; uncharacterized protein
D midi_01175 hypothetical protein K09792 K09792; uncharacterized protein
D midi_00990 uncharacterized protein conserved in bacteria K09797 K09797; uncharacterized protein
D midi_01046 hypothetical protein K09798 K09798; uncharacterized protein
D midi_00912 hypothetical protein K09985 K09985; uncharacterized protein
D midi_00303 Uncharacterized protein conserved in bacteria K09987 K09987; uncharacterized protein
D midi_00757 hypothetical protein K09991 K09991; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 22, 2024