+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Candidatus Methylospira mobilis

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ACRISPR-Cas system B Universal Cas proteins C F6R98_00825 cas1e; type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 C F6R98_05460 cas1c; type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 C F6R98_21205 cas1f; type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 C F6R98_00830 type I-E CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 C F6R98_05465 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D F6R98_00775 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D F6R98_05425 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D F6R98_21200 cas3f; type I-F CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors D F6R98_05455 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-B factors D F6R98_05455 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-C factors D F6R98_05435 cas8c; type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1 D F6R98_05440 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2 D F6R98_05455 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D F6R98_05430 cas5c; type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d C Subtype I-D factors D F6R98_05455 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-E factors D F6R98_00780 casA; type I-E CRISPR-associated protein Cse1/CasA K19123 casA; CRISPR system Cascade subunit CasA D F6R98_00785 casB; type I-E CRISPR-associated protein Cse2/CasB K19046 casB; CRISPR system Cascade subunit CasB D F6R98_00790 cas7e; type I-E CRISPR-associated protein Cas7/Cse4/CasC K19124 casC; CRISPR system Cascade subunit CasC D F6R98_00795 cas5e; type I-E CRISPR-associated protein Cas5/CasD K19125 casD; CRISPR system Cascade subunit CasD D F6R98_00800 cas6e; type I-E CRISPR-associated protein Cas6/Cse3/CasE K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors D F6R98_21180 csy1; type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1 D F6R98_21175 csy2; type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2 D F6R98_21165 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors D F6R98_05455 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C F6R98_02970 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C F6R98_15975 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C F6R98_19445 restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C F6R98_19935 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C F6R98_02940 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C F6R98_15965 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C F6R98_19450 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C F6R98_19925 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C F6R98_02965 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C F6R98_15950 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C F6R98_18785 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C F6R98_19460 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C F6R98_19910 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D F6R98_01365 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D F6R98_10370 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D F6R98_13605 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system C F6R98_08605 restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5] C F6R98_08610 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] B Type IV R-M system C F6R98_19465 restriction endonuclease K07448 mrr; restriction system protein # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR C Ldr-Rdl C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD C YafQ-dinJ C YoeB-YefM D F6R98_04270 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-] D F6R98_04275 type II toxin-antitoxin system Phd/YefM family antitoxin K19159 yefM; antitoxin YefM C HipA-HipB C HicA-HicB D F6R98_16870 mRNA interferase K07339 hicA; mRNA interferase HicA [EC:3.1.-.-] D F6R98_16865 type II toxin-antitoxin system HicB family antitoxin K18843 hicB; antitoxin HicB C YafO-YafN C PspC-PspB C CcdB-CcdA C ParE-ParD D F6R98_02040 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4 D F6R98_12805 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4 C Doc-Phd C HigB-HigA D F6R98_01415 peptidase K07334 higB-1; toxin HigB-1 D F6R98_08645 peptidase K07334 higB-1; toxin HigB-1 D F6R98_16285 peptidase K07334 higB-1; toxin HigB-1 D F6R98_19895 ImmA/IrrE family metallo-endopeptidase K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D F6R98_00755 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1 D F6R98_01420 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1 D F6R98_08640 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1 D F6R98_16280 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA C VapC-VapB D F6R98_18050 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D F6R98_18045 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB D F6R98_21275 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB D F6R98_16670 type II toxin-antitoxin system VapC family toxin K28279 vapC22; ribonuclease VapC22 [EC:3.1.-.-] D F6R98_16665 type II toxin-antitoxin system prevent-host-death family antitoxin K28280 vapB22; antitoxin VapB22 D F6R98_18090 type II toxin-antitoxin system prevent-host-death family antitoxin K28280 vapB22; antitoxin VapB22 D F6R98_15795 type II toxin-antitoxin system VapC family toxin K28143 vapC24S; ribonuclease VapC24/25/29/31/33/37/38/39/41/43/44/48 [EC:3.1.-.-] D F6R98_15800 DUF2191 domain-containing protein K28144 vapB24S; antitoxin VapB24/25/29/31/33/37/38/39/41/43/44/48 C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C SpoIISA-SpoIISB C Tse6-Tsi6 C Type II TA system related factors D F6R98_04875 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D F6R98_01640 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D F6R98_16300 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D F6R98_17355 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D F6R98_08585 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB D F6R98_12105 hypothetical protein K19168 cptA; toxin CptA D F6R98_12110 hypothetical protein K09159 cptB; antitoxin CptB C AbiEii-AbiEi B Type V TA system C GhoT-GhoS C Other GhoT/OrtT toxin family protein B Type VI TA system C SocB-SocA B Type VII TA system C Hha-TomB C TglT-TakA C HepT-MntA B Type VIII TA system C SdsR-RyeA # ADNA phosphothiolation system B Sulfur modification proteins C F6R98_03695 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C F6R98_18240 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C F6R98_01995 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 19, 2025