+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanococcus maripaludis C7

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MmarC7_1068 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MmarC7_1555 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E MmarC7_0986 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen E MmarC7_0558 XPG I K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E MmarC7_0215 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) E MmarC7_0286 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D Other NER factors E MmarC7_0215 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E MmarC7_0286 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E MmarC7_0986 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen E MmarC7_0215 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E MmarC7_0286 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D MmarC7_0986 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MmarC7_1340 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MmarC7_0328 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MmarC7_1068 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MmarC7_1555 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MmarC7_0254 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MmarC7_0951 Xylose isomerase domain protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MmarC7_1566 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MmarC7_0955 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E MmarC7_1750 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E MmarC7_1748 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E MmarC7_1749 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E MmarC7_0061 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MmarC7_0002 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E MmarC7_1753 Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MmarC7_1752 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MmarC7_0011 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase D Other MMR factors E MmarC7_0061 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MmarC7_0002 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MmarC7_1756 Site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MmarC7_0586 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MmarC7_0585 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MmarC7_1786 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MmarC7_1566 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MmarC7_0955 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins E MmarC7_0006 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E MmarC7_0469 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E MmarC7_1640 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E MmarC7_1337 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E MmarC7_0586 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MmarC7_0585 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E MmarC7_0511 protein of unknown function DUF87 K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E MmarC7_0456 conserved hypothetical protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E MmarC7_0138 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MmarC7_0203 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MmarC7_1566 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MmarC7_0955 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F MmarC7_1750 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F MmarC7_1748 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MmarC7_0466 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MmarC7_0007 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MmarC7_1524 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MmarC7_0392 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MmarC7_1340 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MmarC7_0328 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D MmarC7_0243 protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024