+D GENES KO
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KEGG Orthology (KO) - Methanobrevibacter olleyae
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:mol00010]
D YLM1_0170 fructose 1,6-bisphosphatase Fbp K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D YLM1_0540 phospho-2-dehydro-3-deoxyheptonate aldolase/fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D YLM1_1282 triose-phosphate isomerase TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YLM1_1311 glyceraldehyde-3-phosphate dehydrogenase Gap K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D YLM1_1281 phosphoglycerate kinase Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YLM1_0131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase ApgM1 K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0725 homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YLM1_1353 phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1287 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YLM1_1286 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_1056 ADP-dependent acetyl-CoA synthetase Acs K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:mol00020]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_1287 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YLM1_1286 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YLM1_1285 2-oxoglutarate ferredoxin oxidoreductase subunit gamma KorC K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YLM1_1288 2-oxoglutarate ferredoxin oxidoreductase subunit delta KorD K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YLM1_0776 succinate-CoA ligase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YLM1_1284 succinate-CoA synthetase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YLM1_0334 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0220 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0430 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_1350 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_0434 pyruvate carboxylase subunit A PycA K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YLM1_1339 pyruvate carboxylase subunit B PycB K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:mol00030]
D YLM1_0516 ribose 5-phosphate isomerase A RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YLM1_1686 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase Fae/Hps K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D YLM1_0353 demethylmenaquinone methyltransferase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43]
D YLM1_0018 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D YLM1_1153 deoxyribose-phosphate aldolase DeoC K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_1124 ribose-phosphate diphosphokinase Prs K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YLM1_0170 fructose 1,6-bisphosphatase Fbp K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D YLM1_0540 phospho-2-dehydro-3-deoxyheptonate aldolase/fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
C 00040 Pentose and glucuronate interconversions [PATH:mol00040]
D YLM1_0866 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YLM1_0962 UDP-glucose pyrophosphorylase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YLM1_1615 fuculose 1-phosphate aldolase FucA K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:mol00051]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_1615 fuculose 1-phosphate aldolase FucA K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D YLM1_0170 fructose 1,6-bisphosphatase Fbp K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D YLM1_0540 phospho-2-dehydro-3-deoxyheptonate aldolase/fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D YLM1_1282 triose-phosphate isomerase TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:mol00052]
D YLM1_0970 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YLM1_0888 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YLM1_0962 UDP-glucose pyrophosphorylase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_1015 UDP-galactopyranose mutase Glf K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
C 00053 Ascorbate and aldarate metabolism [PATH:mol00053]
D YLM1_0866 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:mol00500]
D YLM1_0962 UDP-glucose pyrophosphorylase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:mol00520]
D YLM1_0372 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_1021 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_0130 phosphoglucosamine mutase GlmM1 K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YLM1_0128 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D YLM1_1165 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YLM1_1565 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YLM1_0911 NAD-dependent epimerase/dehydratase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetyl-alpha-D-glucosaminouronate 4-epimerase [EC:5.1.3.7 5.1.3.45]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_0962 UDP-glucose pyrophosphorylase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YLM1_0866 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YLM1_0970 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YLM1_0888 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YLM1_1015 UDP-galactopyranose mutase Glf K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
C 00620 Pyruvate metabolism [PATH:mol00620]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1287 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YLM1_1286 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D YLM1_1056 ADP-dependent acetyl-CoA synthetase Acs K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D YLM1_0314 lactaldehyde dehydrogenase CofA K19266 E1.2.1.22; lactaldehyde dehydrogenase [EC:1.2.1.22]
D YLM1_1468 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YLM1_0434 pyruvate carboxylase subunit A PycA K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YLM1_1339 pyruvate carboxylase subunit B PycB K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_0334 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0220 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0430 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_1350 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_1353 phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1661 2-isopropylmalate synthase LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D YLM1_0056 homocitrate synthase AksA K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:mol00630]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1325 phosphoglycolate phosphatase Gph K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18]
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1553 serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:mol00640]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_1056 ADP-dependent acetyl-CoA synthetase Acs K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1284 succinate-CoA synthetase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YLM1_0776 succinate-CoA ligase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:mol00650]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1287 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YLM1_1286 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YLM1_1130 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YLM1_0947 NADP-dependent alcohol dehydrogenase Adh K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80]
D YLM1_1703 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_0081 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_1704 acetolactate synthase small subunit IlvN K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:mol00660]
D YLM1_1703 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_0081 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_1704 acetolactate synthase small subunit IlvN K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YLM1_1284 succinate-CoA synthetase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YLM1_0776 succinate-CoA ligase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YLM1_0912 citramalate synthase CimA K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D YLM1_1566 3-isopropylmalate dehydratase large subunit LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YLM1_1567 3-isopropylmalate dehydratase small subunit LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YLM1_1568 3-isopropylmalate dehydrogenase LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:mol00562]
D YLM1_1338 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D YLM1_1282 triose-phosphate isomerase TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:mol00190]
D YLM1_0345 A1A0 archaeal ATP synthase subunit A AhaA K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D YLM1_0346 A1A0 archaeal ATP synthase subunit B AhaB K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D YLM1_0343 A1A0 archaeal ATP synthase subunit C AhaC K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D YLM1_0347 A1A0 archaeal ATP synthase subunit D AhaD K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D YLM1_0342 A1A0 archaeal ATP synthase subunit E AhaE K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D YLM1_0344 A1A0 archaeal ATP synthase subunit F AhaF K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D YLM1_0339 A1A0 archaeal ATP synthase subunit H AhaH K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D YLM1_0340 A1A0 archaeal ATP synthase subunit I AhaI K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D YLM1_0341 A1A0 archaeal ATP synthase subunit K AhaK K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D YLM1_0491 manganese-dependent inorganic pyrophosphatase PpaC K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:mol00710]
D YLM1_1281 phosphoglycerate kinase Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YLM1_1311 glyceraldehyde-3-phosphate dehydrogenase Gap K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D YLM1_0516 ribose 5-phosphate isomerase A RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YLM1_1282 triose-phosphate isomerase TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:mol00720]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1353 phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YLM1_0434 pyruvate carboxylase subunit A PycA K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YLM1_1339 pyruvate carboxylase subunit B PycB K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_0334 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0220 fumarate hydratase FumA K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D YLM1_0430 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_1350 fumarate hydratase FumA K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D YLM1_1577 succinate dehydrogenase/fumarate reductase flavoprotein subunit SdhA K18209 tfrA; fumarate reductase (CoM/CoB) subunit A [EC:1.3.4.1]
D YLM1_0294 succinate dehydrogenase/fumarate reductase iron-sulfur protein SdhB K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1]
D YLM1_0776 succinate-CoA ligase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YLM1_1284 succinate-CoA synthetase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1287 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YLM1_1286 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YLM1_1285 2-oxoglutarate ferredoxin oxidoreductase subunit gamma KorC K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YLM1_1288 2-oxoglutarate ferredoxin oxidoreductase subunit delta KorD K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YLM1_0218 pyruvate ferredoxin oxidoreductase-associated PorE K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_0219 pyruvate ferredoxin oxidoreductase-associated PorF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:mol00680]
D YLM1_1106 formate dehydrogenase alpha subunit FdhA K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_0030 formate dehydrogenase alpha subunit FdhA K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_1540 formate dehydrogenase alpha subunit FdhA K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_0031 formate dehydrogenase beta subunit FdhB K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_1539 formate dehydrogenase beta subunit FdhB K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_1105 formate dehydrogenase beta subunit FdhB K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D YLM1_0218 pyruvate ferredoxin oxidoreductase-associated PorE K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_0219 pyruvate ferredoxin oxidoreductase-associated PorF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_1553 serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_0170 fructose 1,6-bisphosphatase Fbp K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D YLM1_0540 phospho-2-dehydro-3-deoxyheptonate aldolase/fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D YLM1_0018 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D YLM1_0353 demethylmenaquinone methyltransferase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43]
D YLM1_1686 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase Fae/Hps K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D YLM1_0399 glutamate synthase domain-containing protein K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D YLM1_0040 tungsten formylmethanofuran dehydrogenase subunit A FwdA K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12]
D YLM1_0039 tungsten formylmethanofuran dehydrogenase subunit B FwdB K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12]
D YLM1_0041 tungsten formylmethanofuran dehydrogenase subunit C FwdC K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12]
D YLM1_0038 tungsten formylmethanofuran dehydrogenase subunit D FwdD K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12]
D YLM1_0035 tungsten formylmethanofuran dehydrogenase subunit H FwdH K00204 fwdH; 4Fe-4S ferredoxin
D YLM1_0421 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00205 fwdF; 4Fe-4S ferredoxin
D YLM1_0036 tungsten formylmethanofuran dehydrogenase subunit F FwdF K00205 fwdF; 4Fe-4S ferredoxin
D YLM1_0037 tungsten formylmethanofuran dehydrogenase subunit G FwdG K11260 fwdG; 4Fe-4S ferredoxin
D YLM1_0892 formylmethanofuran-tetrahydromethanopterin formyltransferase Ftr K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
D YLM1_1463 formylmethanofuran-tetrahydromethanopterin formyltransferase Ftr K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
D YLM1_1103 methenyltetrahydromethanopterin cyclohydrolase Mch K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27]
D YLM1_1676 F420-dependent methylenetetrahydromethanopterin dehydrogenase Mtd K00319 mtd; methylenetetrahydromethanopterin dehydrogenase [EC:1.5.98.1]
D YLM1_1805 coenzyme F420 hydrogenase alpha subunit FrhA K00440 frhA; coenzyme F420 hydrogenase subunit alpha [EC:1.12.98.1]
D YLM1_1808 coenzyme F420 hydrogenase beta subunit FrhB K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D YLM1_1806 coenzyme F420 hydrogenase delta subunit FrhD K00442 frhD; coenzyme F420 hydrogenase subunit delta
D YLM1_1807 coenzyme F420 hydrogenase gamma subunit FrhG K00443 frhG; coenzyme F420 hydrogenase subunit gamma [EC:1.12.98.1]
D YLM1_0193 coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase Hmd K13942 hmd; 5,10-methenyltetrahydromethanopterin hydrogenase [EC:1.12.98.2]
D YLM1_0233 5,10-methylenetetrahydromethanopterin reductase Mer K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D YLM1_1374 tetrahydromethanopterin S-methyltransferase subunit A MtrA K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4]
D YLM1_0116 tetrahydromethanopterin S-methyltransferase subunit A MtrA2 K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4]
D YLM1_0712 tetrahydromethanopterin S-methyltransferase subunit A MtrA K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4]
D YLM1_1375 tetrahydromethanopterin S-methyltransferase subunit B MtrB K00578 mtrB; tetrahydromethanopterin S-methyltransferase subunit B [EC:7.2.1.4]
D YLM1_1376 tetrahydromethanopterin S-methyltransferase subunit C MtrC K00579 mtrC; tetrahydromethanopterin S-methyltransferase subunit C [EC:7.2.1.4]
D YLM1_1377 tetrahydromethanopterin S-methyltransferase subunit D MtrD K00580 mtrD; tetrahydromethanopterin S-methyltransferase subunit D [EC:7.2.1.4]
D YLM1_1378 tetrahydromethanopterin S-methyltransferase subunit E MtrE K00581 mtrE; tetrahydromethanopterin S-methyltransferase subunit E [EC:7.2.1.4]
D YLM1_1373 tetrahydromethanopterin S-methyltransferase subunit F MtrF K00582 mtrF; tetrahydromethanopterin S-methyltransferase subunit F [EC:7.2.1.4]
D YLM1_1372 tetrahydromethanopterin S-methyltransferase subunit G MtrG K00583 mtrG; tetrahydromethanopterin S-methyltransferase subunit G [EC:7.2.1.4]
D YLM1_1370 tetrahydromethanopterin S-methyltransferase subunit H MtrH K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4]
D YLM1_1371 tetrahydromethanopterin S-methyltransferase subunit H MtrH K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4]
D YLM1_1379 methyl-coenzyme M reductase alpha subunit McrA K00399 mcrA; methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1]
D YLM1_1111 methyl-coenzyme M reductase II alpha subunit MrtA K00399 mcrA; methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1]
D YLM1_1305 methyl-coenzyme M reductase component A2 AtwA K00400 K00400; methyl coenzyme M reductase system, component A2
D YLM1_0643 methyl-coenzyme M reductase component A2 AtwA K00400 K00400; methyl coenzyme M reductase system, component A2
D YLM1_1383 methyl-coenzyme M reductase beta subunit McrB K00401 mcrB; methyl-coenzyme M reductase beta subunit [EC:2.8.4.1]
D YLM1_1108 methyl-coenzyme M reductase II beta subunit MrtB K00401 mcrB; methyl-coenzyme M reductase beta subunit [EC:2.8.4.1]
D YLM1_1380 methyl-coenzyme M reductase gamma subunit McrG K00402 mcrG; methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1]
D YLM1_1110 methyl-coenzyme M reductase II gamma subunit MrtG K00402 mcrG; methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1]
D YLM1_1381 methyl-coenzyme M reductase C subunit McrC K03421 mcrC; methyl-coenzyme M reductase subunit C
D YLM1_1382 methyl-coenzyme M reductase D subunit McrD K03422 mcrD; methyl-coenzyme M reductase subunit D
D YLM1_1109 methyl-coenzyme M reductase II D protein MrtD K03422 mcrD; methyl-coenzyme M reductase subunit D
D YLM1_0874 CoB--CoM heterodisulfide reductase subunit A HdrA K22480 hdrA1; heterodisulfide reductase subunit A1 [EC:1.8.7.3]
D YLM1_0875 CoB--CoM heterodisulfide reductase subunit B HdrB K22481 hdrB1; heterodisulfide reductase subunit B1 [EC:1.8.7.3]
D YLM1_0876 CoB--CoM heterodisulfide reductase subunit C HdrC K22482 hdrC1; heterodisulfide reductase subunit C1 [EC:1.8.7.3]
D YLM1_1554 CoB--CoM heterodisulfide reductase subunit A HdrA K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D YLM1_0405 CoB--CoM heterodisulfide reductase subunit B HdrB K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D YLM1_0404 CoB--CoM heterodisulfide reductase subunit C HdrC K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D YLM1_0621 CoB--CoM heterodisulfide reductase subunit B HdrB K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1]
D YLM1_1364 methyl viologen-reducing hydrogenase delta subunit MvhD K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D YLM1_1104 methyl viologen-reducing hydrogenase delta subunit MvhD K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D YLM1_1538 methyl viologen-reducing hydrogenase delta subunit MvhD K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D YLM1_1362 methyl viologen-reducing hydrogenase alpha subunit MvhA K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5]
D YLM1_1363 methyl viologen-reducing hydrogenase gamma subunit MvhG K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D YLM1_1353 phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YLM1_0131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase ApgM1 K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0725 homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0323 phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YLM1_0059 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YLM1_0878 phosphosulfolactate synthase ComA K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19]
D YLM1_1399 2-phosphosulfolactate phosphatase ComB K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
D YLM1_1417 L-sulfolactate dehydrogenase ComC K05884 comC; L-2-hydroxycarboxylate dehydrogenase (NAD+) [EC:1.1.1.337]
D YLM1_0881 sulfopyruvate decarboxylase alpha subunit ComD K06034 comD; sulfopyruvate decarboxylase subunit alpha [EC:4.1.1.79]
D YLM1_0882 sulfopyruvate decarboxylase beta subunit ComE K13039 comE; sulfopyruvate decarboxylase subunit beta [EC:4.1.1.79]
D YLM1_0639 FO synthase subunit 2 CofH K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147]
D YLM1_1412 FO synthase subunit 1 CofG K11780 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [EC:4.3.1.32]
D YLM1_0512 2-phospho-L-lactate guanylyltransferase CofC K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D YLM1_1301 LPPG:FO 2-phospho-L-lactate transferase CofD K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D YLM1_1299 F420-0:gamma-glutamyl ligase CofE K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
D YLM1_0056 homocitrate synthase AksA K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-]
D YLM1_0055 homoaconitase large subunit AksD K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114]
D YLM1_1157 homoaconitase small subunit AksE K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114]
D YLM1_0578 isohomocitrate dehydrogenase AksF K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-]
D YLM1_1352 L-tyrosine decarboxylase MnfA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D YLM1_1164 ATP-grasp domain-containing protein K06914 mfnD; tyramine---L-glutamate ligase [EC:6.3.4.24]
D YLM1_0623 hypothetical protein K09733 mfnB; (5-formylfuran-3-yl)methyl phosphate synthase [EC:4.2.3.153]
D YLM1_0185 aspartate/glutamate/uridylate kinase K07144 mfnE; 5-(aminomethyl)-3-furanmethanol phosphate kinase [EC:2.7.4.31]
D YLM1_1163 H4MPT-linked C1 transfer pathway protein K07072 mfnF; (4-(4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl)furan-2-yl)methanamine synthase [EC:2.5.1.131]
C 00910 Nitrogen metabolism [PATH:mol00910]
D YLM1_1693 hydroxylamine reductase Hcp K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YLM1_1215 glutamate dehydrogenase GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1082 carbonic anhydrase Cab K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:mol00920]
D YLM1_0508 nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YLM1_0509 nitrate/sulfonate/bicarbonate ABC transporter permease protein K15554 ssuC; sulfonate transport system permease protein
D YLM1_0510 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YLM1_1059 serine O-acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YLM1_1723 cysteine synthase CysKM K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YLM1_1060 cysteine synthase CysKM K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YLM1_0269 homoserine O-acetyltransferase MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D YLM1_0680 homoserine O-acetyltransferase MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:mol00061]
D YLM1_0577 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation [PATH:mol00062]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00071 Fatty acid degradation [PATH:mol00071]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D YLM1_0577 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00564 Glycerophospholipid metabolism [PATH:mol00564]
D YLM1_1641 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YLM1_1640 glycerol-3-phosphate cytidylyltransferase K00968 PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]
D YLM1_0514 NAD(P)-dependent glycerol-1-phosphate dehydrogenase EgsA K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D YLM1_0765 geranylgeranylglyceryl phosphate synthase family protein K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
D YLM1_1336 digeranylgeranylglyceryl phosphate synthase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
D YLM1_1161 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
D YLM1_1292 archaetidylserine synthase K19665 pssA; archaetidylserine synthase [EC:2.7.8.38]
D YLM1_0971 geranylgeranyl reductase family protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
D YLM1_0823 geranylgeranyl reductase family protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:mol00230]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_1124 ribose-phosphate diphosphokinase Prs K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YLM1_0968 amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YLM1_1702 phosphoribosylamine--glycine ligase PurD K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YLM1_1548 phosphoribosylformylglycinamidine synthase I PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D YLM1_1024 phosphoribosylformylglycinamidine (FGAM) synthase PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D YLM1_1025 phosphoribosylformylglycinamidine (FGAM) synthase PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YLM1_1416 phosphoribosylformylglycinamidine cyclo-ligase PurM K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YLM1_1643 phosphoribosylaminoimidazole carboxylase PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YLM1_1023 phosphoribosylaminoimidazole-succinocarboxamide synthase PurC K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YLM1_1839 adenylosuccinate lyase PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YLM1_0256 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate-formate ligase PurP K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D YLM1_1296 IMP cyclohydrolase PurO K11176 purO; IMP cyclohydrolase [EC:3.5.4.10]
D YLM1_1512 adenine phosphoribosyltransferase Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YLM1_1715 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0088 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0015 carbohydrate kinase PfkB family K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-]
D YLM1_0624 inosine-5'-monophosphate dehydrogenase GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YLM1_0987 nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YLM1_1720 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YLM1_0917 GMP synthase subunit B GuaAb K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YLM1_0919 GMP synthase subunit A GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YLM1_0011 anaerobic ribonucleoside-triphosphate reductase NrdD K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YLM1_0057 adenylate cyclase CyaA K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D YLM1_0506 adenylosuccinate synthetase PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YLM1_1193 adenine deaminase Ade K01486 ade; adenine deaminase [EC:3.5.4.2]
D YLM1_0462 adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D YLM1_0065 hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:mol00240]
D YLM1_1250 carbamoyl-phosphate synthase large subunit CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YLM1_1251 carbamoyl-phosphate synthase small subunit CarA K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YLM1_1609 aspartate carbamoyltransferase PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YLM1_1182 aspartate carbamoyltransferase regulatory subunit PyrI K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YLM1_1360 dihydroorotase PyrC K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YLM1_1425 dihydroorotate dehydrogenase PyrD K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D YLM1_1424 dihydroorotate dehydrogenase electron transfer subunit PyrK K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D YLM1_1243 orotate phosphoribosyltransferase PyrE K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YLM1_0598 orotidine 5'-phosphate decarboxylase PyrF K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YLM1_0364 uridylate kinase PyrH K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YLM1_0987 nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YLM1_0662 CTP synthase PyrG K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YLM1_0465 cytidylate kinase Cmk K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YLM1_1715 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0088 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0861 uracil phosphoribosyltransferase Upp K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YLM1_0015 carbohydrate kinase PfkB family K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-]
D YLM1_1629 CMP/dCMP deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YLM1_0011 anaerobic ribonucleoside-triphosphate reductase NrdD K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YLM1_0291 deoxycytidine triphosphate deaminase Dcd K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YLM1_0676 thymidylate kinase Tmk K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YLM1_0247 thymidylate kinase Tmk K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YLM1_0593 dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YLM1_1714 thymidylate synthase ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:mol00250]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0721 asparagine synthase (glutamine-hydrolyzing) AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YLM1_0263 N-carbamoyl-D-amino acid amidohydrolase AguB K13566 NIT2; omega-amidase [EC:3.5.1.3]
D YLM1_1457 argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YLM1_0976 argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YLM1_0506 adenylosuccinate synthetase PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YLM1_1839 adenylosuccinate lyase PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YLM1_1609 aspartate carbamoyltransferase PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YLM1_1182 aspartate carbamoyltransferase regulatory subunit PyrI K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YLM1_1215 glutamate dehydrogenase GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1250 carbamoyl-phosphate synthase large subunit CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YLM1_1251 carbamoyl-phosphate synthase small subunit CarA K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YLM1_1025 phosphoribosylformylglycinamidine (FGAM) synthase PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YLM1_0372 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_1021 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_0968 amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:mol00260]
D YLM1_1140 aspartate kinase Ask K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YLM1_1137 aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YLM1_0724 homoserine dehydrogenase Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YLM1_0992 threonine synthase ThrC K01733 thrC; threonine synthase [EC:4.2.3.1]
D YLM1_1553 serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YLM1_0131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase ApgM1 K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0725 homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YLM1_0323 phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YLM1_0059 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_1832 tryptophan synthase alpha subunit TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YLM1_1831 tryptophan synthase,beta subunit TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YLM1_1657 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:mol00270]
D YLM1_1059 serine O-acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YLM1_1723 cysteine synthase CysKM K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YLM1_1060 cysteine synthase CysKM K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YLM1_1393 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YLM1_1113 methionine synthase MetE K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YLM1_1550 S-adenosylmethionine synthetase MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YLM1_1589 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D YLM1_0097 methylthioadenosine phosphorylase MtnP K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D YLM1_1228 translation initiation factor aIF-2B alpha subunit K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D YLM1_0051 S-adenosyl-L-homocysteine hydrolase AhcY K01566 E3.13.1.9; S-inosyl-L-homocysteine hydrolase [EC:3.13.1.9]
D YLM1_1140 aspartate kinase Ask K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YLM1_1137 aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YLM1_0724 homoserine dehydrogenase Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YLM1_0877 methanogeneis marker protein 16 K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16]
D YLM1_0269 homoserine O-acetyltransferase MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D YLM1_0680 homoserine O-acetyltransferase MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D YLM1_1055 O-acetylhomoserine/O-acetylserine sulfhydrylase MetZ/CysK K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D YLM1_0717 O-acetylhomoserine/O-acetylserine sulfhydrylase MetZ/CysK K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D YLM1_1712 branched-chain amino acid aminotransferase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0649 malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YLM1_0323 phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:mol00280]
D YLM1_1712 branched-chain amino acid aminotransferase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_0933 ketoisovalerate ferredoxin oxidoreductase alpha subunit VorA K00186 vorA; 2-oxoisovalerate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.7]
D YLM1_0932 ketoisovalerate ferredoxin oxidoreductase beta subunit VorB K00187 vorB; 2-oxoisovalerate ferredoxin oxidoreductase beta subunit [EC:1.2.7.7]
D YLM1_0934 ketoisovalerate ferredoxin oxidoreductase gamma subunit VorC K00188 vorD; 2-oxoisovalerate ferredoxin oxidoreductase delta subunit [EC:1.2.7.7]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1130 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:mol00290]
D YLM1_0912 citramalate synthase CimA K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D YLM1_1566 3-isopropylmalate dehydratase large subunit LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YLM1_1567 3-isopropylmalate dehydratase small subunit LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YLM1_1568 3-isopropylmalate dehydrogenase LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YLM1_1703 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_0081 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_1704 acetolactate synthase small subunit IlvN K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YLM1_1709 ketol-acid reductoisomerase IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YLM1_1695 dihydroxy-acid dehydratase IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YLM1_1712 branched-chain amino acid aminotransferase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YLM1_1661 2-isopropylmalate synthase LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:mol00300]
D YLM1_0724 homoserine dehydrogenase Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YLM1_1140 aspartate kinase Ask K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YLM1_1137 aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YLM1_1139 dihydrodipicolinate synthase DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YLM1_1138 dihydrodipicolinate reductase DapB K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YLM1_1524 acetylornithine aminotransferase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YLM1_1520 diaminopimelate epimerase DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YLM1_0501 LL-diaminopimelate aminotransferase DapL K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D YLM1_1521 diaminopimelate decarboxylase LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YLM1_0056 homocitrate synthase AksA K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-]
D YLM1_0055 homoaconitase large subunit AksD K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114]
D YLM1_1157 homoaconitase small subunit AksE K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114]
D YLM1_0578 isohomocitrate dehydrogenase AksF K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-]
D YLM1_0587 cell wall biosynthesis protein Mur ligase family K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
C 00310 Lysine degradation [PATH:mol00310]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:mol00220]
D YLM1_1699 ornithine carbamoyltransferase ArgF K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YLM1_1457 argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YLM1_0976 argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YLM1_1025 phosphoribosylformylglycinamidine (FGAM) synthase PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1250 carbamoyl-phosphate synthase large subunit CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YLM1_1251 carbamoyl-phosphate synthase small subunit CarA K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YLM1_1215 glutamate dehydrogenase GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0566 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D YLM1_0575 acetylglutamate kinase ArgB K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YLM1_1176 N-acetyl-gamma-glutamyl-phosphate reductase ArgC K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YLM1_1524 acetylornithine aminotransferase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:mol00330]
D YLM1_1629 CMP/dCMP deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YLM1_1197 pyruvoyl-dependent arginine decarboxylase PdaD K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D YLM1_1195 arginase/agmatinase family protein K01480 speB; agmatinase [EC:3.5.3.11]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D YLM1_1005 pyrroline-5-carboxylate reductase ProC K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:mol00340]
D YLM1_1606 ATP phosphoribosyltransferase HisG K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YLM1_0594 ATP phosphoribosyltransferase HisG K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YLM1_1473 phosphoribosyl-ATP pyrophosphohydrolase HisE K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D YLM1_0654 phosphoribosyl-AMP cyclohydrolase HisI K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D YLM1_0818 hisA/hisF family protein K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YLM1_1174 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YLM1_1497 imidazole glycerol phosphate synthase glutamine amidotransferase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YLM1_1535 imidazoleglycerol-phosphate synthase cyclase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YLM1_1677 bifunctional imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YLM1_0559 histidinol dehydrogenase HisD K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:mol00350]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YLM1_1352 L-tyrosine decarboxylase MnfA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:mol00360]
D YLM1_1246 coenzyme F390 synthetase FtsA K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D YLM1_0651 coenzyme F390 synthetase FtsA K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D YLM1_1213 thioesterase family protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:mol00380]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:mol00400]
D YLM1_0540 phospho-2-dehydro-3-deoxyheptonate aldolase/fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D YLM1_0541 3-dehydroquinate synthase AroB K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24]
D YLM1_0778 3-dehydroquinate dehydratase type I AroD K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D YLM1_0657 shikimate 5-dehydrogenase AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YLM1_1144 shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YLM1_1066 3-phosphoshikimate 1-carboxyvinyltransferase AroA K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YLM1_1047 chorismate synthase AroC K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YLM1_1826 anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YLM1_1827 anthranilate synthase component II TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YLM1_1828 anthranilate phosphoribosyltransferase TrpD K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YLM1_1830 phosphoribosylanthranilate isomerase TrpF K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D YLM1_1829 indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D YLM1_1832 tryptophan synthase alpha subunit TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YLM1_1831 tryptophan synthase,beta subunit TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YLM1_1657 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YLM1_1142 chorismate mutase AroH K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YLM1_0137 prephenate dehydrogenase TyrA K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YLM1_1431 prephenate dehydratase PheA K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:mol00410]
D YLM1_1352 L-tyrosine decarboxylase MnfA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D YLM1_0788 pantothenate synthase PanC K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
D YLM1_1640 glycerol-3-phosphate cytidylyltransferase K00968 PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]
C 00450 Selenocompound metabolism [PATH:mol00450]
D YLM1_1393 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YLM1_1113 methionine synthase MetE K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YLM1_0922 thioredoxin-disulfide reductase TrxB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YLM1_0432 pyridoxal phosphate enzyme K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YLM1_0519 methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D YLM1_1553 serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:mol00470]
D YLM1_1025 phosphoribosylformylglycinamidine (FGAM) synthase PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YLM1_0749 cell wall biosynthesis protein Mur ligase family K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YLM1_1520 diaminopimelate epimerase DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YLM1_1521 diaminopimelate decarboxylase LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism
D YLM1_0810 glutathione-disulfide reductase Gor K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis [PATH:mol00552]
D YLM1_1711 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YLM1_1633 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D YLM1_0599 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:mol00543]
D YLM1_1059 serine O-acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:mol00730]
D YLM1_0016 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YLM1_0120 thiamine biosynthesis protein ThiC2 K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YLM1_0511 phosphomethylpyrimidine kinase ThiD K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YLM1_1054 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YLM1_0165 thiamine biosynthesis ATP pyrophosphatase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YLM1_1280 hydroxyethylthiazole kinase ThiM K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D YLM1_1279 thiamine monophosphate synthase ThiE K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YLM1_1631 thiamine monphosphate kinase ThiL K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YLM1_0462 adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:mol00740]
D YLM1_1302 GGDN family protein K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29]
D YLM1_0795 creatinine amidohydrolase ArfB K14653 arfB; 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase [EC:3.5.1.102]
D YLM1_0551 diaminohydroxyphosphoribosylaminopyrimidine reductase RibD K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D YLM1_1576 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YLM1_1570 6,7-dimethyl-8-ribityllumazine synthase RibH K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YLM1_0618 riboflavin synthase RibC K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YLM1_1648 riboflavin kinase RibK K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161]
D YLM1_1175 glycerol-3-phosphate cytidylyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2]
D YLM1_1280 hydroxyethylthiazole kinase ThiM K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D YLM1_0631 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:mol00750]
D YLM1_0992 threonine synthase ThrC K01733 thrC; threonine synthase [EC:4.2.3.1]
D YLM1_0812 pyridoxal 5'-phosphate synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D YLM1_0580 glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:mol00760]
D YLM1_0320 L-aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D YLM1_0272 quinolinate synthetase A protein NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YLM1_0275 nicotinate-nucleotide pyrophosphorylase NadC K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YLM1_1715 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0088 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YLM1_0637 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D YLM1_1168 NADH pyrophosphatase NudC K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YLM1_0931 NAD+ synthetase NadE K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D YLM1_0354 NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YLM1_1198 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:mol00770]
D YLM1_1703 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_0081 acetolactate synthase large subunit IlvB K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YLM1_1704 acetolactate synthase small subunit IlvN K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YLM1_1709 ketol-acid reductoisomerase IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YLM1_1695 dihydroxy-acid dehydratase IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YLM1_0554 pantothenate kinase CoaA K06982 pok; pantoate kinase [EC:2.7.1.169]
D YLM1_0788 pantothenate synthase PanC K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
D YLM1_1428 coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YLM1_0420 phosphopantetheine adenylyltransferase CoaD K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YLM1_0979 hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237]
D YLM1_1712 branched-chain amino acid aminotransferase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YLM1_1352 L-tyrosine decarboxylase MnfA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:mol00780]
D YLM1_1481 6-carboxyhexanoate--CoA ligase BioW K01906 bioW; 6-carboxyhexanoate--CoA ligase [EC:6.2.1.14]
D YLM1_1482 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YLM1_1796 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YLM1_1789 dethiobiotin synthase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YLM1_1788 biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D YLM1_0433 biotin-acetyl-CoA-carboxylase ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:mol00785]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00790 Folate biosynthesis [PATH:mol00790]
D YLM1_0113 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YLM1_0114 7-cyano-7-deazaguanosine biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YLM1_0112 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YLM1_1409 GTP cyclohydrolase MptA K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39]
D YLM1_1289 hypothetical protein K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25]
D YLM1_0089 hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YLM1_1158 beta-ribofuranosylaminobenzene 5'-phosphate synthase MptG K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54]
D YLM1_1552 archaeoflavoprotein AfpA K18853 dmrX; dihydromethanopterin reductase (acceptor) [EC:1.5.99.15]
D YLM1_0034 molybdopterin cofactor biosynthesis protein A MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YLM1_1148 molybdenum cofactor biosynthesis protein C MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YLM1_0636 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YLM1_1242 molybdenum cofactor biosynthesis protein B MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YLM1_1547 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YLM1_0747 MobA-like NTP transferase domain-containing protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:mol00670]
D YLM1_1553 serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YLM1_1714 thymidylate synthase ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YLM1_0377 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:mol00860]
D YLM1_0499 glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YLM1_1308 glutamyl-tRNA reductase HemA K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YLM1_0543 glutamate-1-semialdehyde-2,1-aminomutase HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YLM1_1046 delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YLM1_1200 porphobilinogen deaminase HemC K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YLM1_1030 uroporphyrinogen-III synthase HemD K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YLM1_1026 uroporphyrin-III C-methyltransferase CobA K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YLM1_1307 siroheme synthase CysG K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D YLM1_0243 cobalt chelatase CbiK K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D YLM1_0234 precorrin-2 C20-methyltransferase CbiL K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D YLM1_0238 precorrin-3B C17-methyltransferase CbiH K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D YLM1_1618 precorrin-3B C17-methyltransferase CbiH K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D YLM1_0236 precorrin-4 C11-methyltransferase CbiF K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D YLM1_0237 cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D YLM1_0239 precorrin-6x reductase CbiJ K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D YLM1_0235 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D YLM1_0240 precorrin-6Y C5,15-methyltransferase (decarboxylating) CbiET K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D YLM1_0242 precorrin-8X methylmutase CbiC K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D YLM1_0241 cobyrinic acid a,c-diamide synthase CbiA K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D YLM1_1663 cobyrinic acid a,c-diamide synthase CbiA K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D YLM1_1795 magnesium chelatase subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D YLM1_1128 cobyric acid synthase CbiP K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D YLM1_1612 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D YLM1_0611 adenosylcobinamide amidohydrolase CbiZ K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D YLM1_1368 GTP:adenosylcobinamide-phosphate guanylyltransferase CobY K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62]
D YLM1_1343 cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D YLM1_0966 4Fe-4S iron sulfur cluster binding protein NifH/frxC family K21610 cfbC; Ni-sirohydrochlorin a,c-diamide reductive cyclase subunit CfbC [EC:6.3.3.7]
D YLM1_1498 methanogeneis marker protein 13 K21611 cfbD; Ni-sirohydrochlorin a,c-diamide reductive cyclase subunit CfbD [EC:6.3.3.7]
D YLM1_1199 cell wall biosynthesis protein Mur ligase family K21612 cfbE; coenzyme F430 synthetase [EC:6.4.1.9]
D YLM1_1587 ferritin-like domain-containing protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:mol00130]
D YLM1_0631 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YLM1_0103 hypothetical protein K09834 VTE1; tocopherol cyclase [EC:5.5.1.24]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:mol00900]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1130 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YLM1_0775 hydroxymethylglutaryl-CoA reductase (NADPH) HmgA K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D YLM1_0485 mevalonate kinase Mvk K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D YLM1_0486 isopentenyl diphosphate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26]
D YLM1_1724 aconitase K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182]
D YLM1_1820 hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182]
D YLM1_1642 UbiD family decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126]
D YLM1_0631 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YLM1_0487 isopentenyl diphosphate delta-isomerase Fni K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D YLM1_0489 bifunctional short chain isoprenyl diphosphate synthase IdsA K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D YLM1_0546 undecaprenyl pyrophosphate synthetase UppS K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:mol00523]
D YLM1_1563 glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YLM1_0128 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D YLM1_0960 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1561 dTDP-glucose 4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1562 dTDP-4-dehydrorhamnose 3,5-epimerase RfbC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D YLM1_1564 dTDP-4-dehydrorhamnose reductase RfbD K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D YLM1_0960 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1561 dTDP-glucose 4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:mol00261]
D YLM1_1140 aspartate kinase Ask K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YLM1_1137 aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YLM1_1139 dihydrodipicolinate synthase DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YLM1_1138 dihydrodipicolinate reductase DapB K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:mol00521]
D YLM1_0123 phosphoglucosamine mutase GlmM2 K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YLM1_1338 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D YLM1_1563 glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YLM1_0128 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D YLM1_0960 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1561 dTDP-glucose 4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1562 dTDP-4-dehydrorhamnose 3,5-epimerase RfbC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D YLM1_1564 dTDP-4-dehydrorhamnose reductase RfbD K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:mol00525]
D YLM1_1563 glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YLM1_0128 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D YLM1_0960 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YLM1_1561 dTDP-glucose 4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:mol00401]
D YLM1_0137 prephenate dehydrogenase TyrA K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YLM1_1826 anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YLM1_1827 anthranilate synthase component II TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites [PATH:mol00999]
D YLM1_1550 S-adenosylmethionine synthetase MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YLM1_0657 shikimate 5-dehydrogenase AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:mol00362]
D YLM1_0589 4-oxalocrotonate tautomerase family enzyme DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D YLM1_0631 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:mol00625]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D YLM1_1594 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D YLM1_0589 4-oxalocrotonate tautomerase family enzyme DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:mol00633]
D YLM1_0218 pyruvate ferredoxin oxidoreductase-associated PorE K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_0219 pyruvate ferredoxin oxidoreductase-associated PorF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D YLM1_0216 pyruvate ferredoxin oxidoreductase alpha subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D YLM1_0217 pyruvate ferredoxin oxidoreductase beta subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D YLM1_0214 pyruvate ferredoxin oxidoreductase gamma subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D YLM1_0215 pyruvate ferredoxin oxidoreductase delta subunit PorD K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D YLM1_0538 3-hydroxybutyryl-CoA dehydrogenase Hbd K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YLM1_0589 4-oxalocrotonate tautomerase family enzyme DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:mol00626]
D YLM1_1229 NADP-dependent alcohol dehydrogenase Adh K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:mol03020]
D YLM1_1276 DNA-directed RNA polymerase subunit B' RpoB1 K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D YLM1_1277 DNA-directed RNA polymerase subunit B'' RpoB2 K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D YLM1_1275 DNA-directed RNA polymerase subunit A' RpoA1 K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D YLM1_1274 DNA-directed RNA polymerase subunit A'' RpoA2 K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D YLM1_0475 DNA-directed RNA polymerase subunit D RpoD K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D YLM1_1509 DNA-directed RNA polymerase subunit L RpoL K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D YLM1_0982 DNA-directed RNA polymerase subunit E' RpoE1 K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D YLM1_1516 DNA-directed RNA polymerase subunit F RpoF K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D YLM1_1278 DNA-directed RNA polymerase subunit H RpoH K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D YLM1_0480 DNA-directed RNA polymerase subunit K RpoK K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D YLM1_0479 DNA-directed RNA polymerase subunit N RpoN K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D YLM1_0838 DNA-directed RNA polymerase subunit P RpoP 847a K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
C 03022 Basal transcription factors [PATH:mol03022]
D YLM1_0356 transcription initiation factor TFIIB Tfb1 K03124 TFIIB; transcription initiation factor TFIIB
D YLM1_1081 transcription initiation factor TFIIB Tfb K03124 TFIIB; transcription initiation factor TFIIB
D YLM1_0058 TATA-box binding protein Tbp K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D YLM1_0152 transcription initiation factor TFIIE alpha subunit Tfe K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:mol03010]
D YLM1_0483 ribosomal protein S2P Rps2p K02967 RP-S2; small subunit ribosomal protein S2
D YLM1_0443 ribosomal protein S3P Rps3p K02982 RP-S3; small subunit ribosomal protein S3
D YLM1_0473 ribosomal protein S4P Rps4p K02986 RP-S4; small subunit ribosomal protein S4
D YLM1_0458 ribosomal protein S5P Rps5p K02988 RP-S5; small subunit ribosomal protein S5
D YLM1_1270 ribosomal protein S7P Rps7p K02992 RP-S7; small subunit ribosomal protein S7
D YLM1_0453 ribosomal protein S8P Rps8p K02994 RP-S8; small subunit ribosomal protein S8
D YLM1_0478 ribosomal protein S9P Rps9p K02996 RP-S9; small subunit ribosomal protein S9
D YLM1_1267 ribosomal protein S10P Rps10p K02946 RP-S10; small subunit ribosomal protein S10
D YLM1_0474 ribosomal protein S11P Rps11p K02948 RP-S11; small subunit ribosomal protein S11
D YLM1_1271 ribosomal protein S12P Rps12p K02950 RP-S12; small subunit ribosomal protein S12
D YLM1_0472 ribosomal protein S13P Rps13p K02952 RP-S13; small subunit ribosomal protein S13
D YLM1_0452 ribosomal protein S14P Rps14p K02954 RP-S14; small subunit ribosomal protein S14
D YLM1_1721 ribosomal protein S15P Rps15p K02956 RP-S15; small subunit ribosomal protein S15
D YLM1_0447 ribosomal protein S17P Rps17p K02961 RP-S17; small subunit ribosomal protein S17
D YLM1_0441 ribosomal protein S19P Rps19p K02965 RP-S19; small subunit ribosomal protein S19
D YLM1_0133 ribosomal protein S3Ae Rps3ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D YLM1_0450 ribosomal protein S4e Rps4e K02987 RP-S4e; small subunit ribosomal protein S4e
D YLM1_0985 ribosomal protein S6e Rps6e K02991 RP-S6e; small subunit ribosomal protein S6e
D YLM1_1038 ribosomal protein S8e Rps8e K02995 RP-S8e; small subunit ribosomal protein S8e
D YLM1_1141 ribosomal protein S17e Rps17e K02962 RP-S17e; small subunit ribosomal protein S17e
D YLM1_0068 ribosomal protein S19e Rps19e K02966 RP-S19e; small subunit ribosomal protein S19e
D YLM1_0978 ribosomal protein S24e Rps24e K02974 RP-S24e; small subunit ribosomal protein S24e
D YLM1_1503 ribosomal protein S27e Rps27e K02978 RP-S27e; small subunit ribosomal protein S27e
D YLM1_0977 ribosomal protein S27ae Rps27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D YLM1_0989 ribosomal protein S28e Rps28e K02979 RP-S28e; small subunit ribosomal protein S28e
D YLM1_0159 ribosomal protein L1P Rpl1p K02863 RP-L1; large subunit ribosomal protein L1
D YLM1_0440 ribosomal protein L2P Rpl2p K02886 RP-L2; large subunit ribosomal protein L2
D YLM1_0437 ribosomal protein L3P Rpl3p K02906 RP-L3; large subunit ribosomal protein L3
D YLM1_0451 ribosomal protein L5P Rpl5p K02931 RP-L5; large subunit ribosomal protein L5
D YLM1_0454 ribosomal protein L6P Rpl6p K02933 RP-L6; large subunit ribosomal protein L6
D YLM1_0160 acidic ribosomal protein P0 RplPO K02864 RP-L10; large subunit ribosomal protein L10
D YLM1_0158 ribosomal protein L11P Rpl11p K02867 RP-L11; large subunit ribosomal protein L11
D YLM1_0161 ribosomal protein L12P Rpl12p K02869 RP-L12; large subunit ribosomal protein L12
D YLM1_0477 ribosomal protein L13P Rpl13p K02871 RP-L13; large subunit ribosomal protein L13
D YLM1_0448 ribosomal protein L14P Rpl14p K02874 RP-L14; large subunit ribosomal protein L14
D YLM1_0460 ribosomal protein L15P Rpl15p K02876 RP-L15; large subunit ribosomal protein L15
D YLM1_0457 ribosomal protein L18P Rpl18p K02881 RP-L18; large subunit ribosomal protein L18
D YLM1_0442 ribosomal protein L22P Rpl22p K02890 RP-L22; large subunit ribosomal protein L22
D YLM1_0439 ribosomal protein L23P Rpl23p K02892 RP-L23; large subunit ribosomal protein L23
D YLM1_0449 ribosomal protein L24P Rpl24p K02895 RP-L24; large subunit ribosomal protein L24
D YLM1_0444 ribosomal protein L29P Rpl29p K02904 RP-L29; large subunit ribosomal protein L29
D YLM1_0459 ribosomal protein L30P Rpl30p K02907 RP-L30; large subunit ribosomal protein L30
D YLM1_0438 ribosomal protein L4p Rpl4p K02930 RP-L4e; large subunit ribosomal protein L4e
D YLM1_0990 ribosomal protein L7Ae Rpl7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D YLM1_1354 ribosomal protein L10e Rpl10e K02866 RP-L10e; large subunit ribosomal protein L10e
D YLM1_0466 ribosomal protein L14e Rpl14e K02875 RP-L14e; large subunit ribosomal protein L14e
D YLM1_0851 ribosomal protein L15e Rpl15e K02877 RP-L15e; large subunit ribosomal protein L15e
D YLM1_0476 ribosomal protein L18e Rpl18e K02883 RP-L18e; large subunit ribosomal protein L18e
D YLM1_0456 ribosomal protein L19e Rpl19e K02885 RP-L19e; large subunit ribosomal protein L19e
D YLM1_1515 ribosomal protein L21e Rpl21e K02889 RP-L21e; large subunit ribosomal protein L21e
D YLM1_0988 ribosomal protein L24e Rpl24e K02896 RP-L24e; large subunit ribosomal protein L24e
D YLM1_1273 ribosomal protein L30e Rpl30e K02908 RP-L30e; large subunit ribosomal protein L30e
D YLM1_0072 ribosomal protein L31e Rpl31e K02910 RP-L31e; large subunit ribosomal protein L31e
D YLM1_0455 ribosomal protein L32e Rpl32e K02912 RP-L32e; large subunit ribosomal protein L32e
D YLM1_0464 ribosomal protein L34e Rpl34e K02915 RP-L34e; large subunit ribosomal protein L34e
D YLM1_0792 ribosomal protein L37e Rpl37e 800a K02922 RP-L37e; large subunit ribosomal protein L37e
D YLM1_0839 ribosomal protein L37Ae Rpl37ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D YLM1_0071 ribosomal protein L39e Rpl39e K02924 RP-L39e; large subunit ribosomal protein L39e
D YLM1_0766 ribosomal protein L40e Rpl40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D YLM1_1504 ribosomal protein L44e Rpl44e K02929 RP-L44e; large subunit ribosomal protein L44e
D YLM1_0074 ribosomal protein LX RplX K02944 RP-LX; large subunit ribosomal protein LX
D YLM1_1876 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1879 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1875 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YLM1_1878 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YLM1_1873 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1874 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:mol00970]
D YLM1_1849 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YLM1_1844 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YLM1_1866 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1869 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1872 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1870 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1865 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YLM1_1856 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YLM1_1860 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YLM1_1845 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YLM1_1863 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YLM1_1850 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YLM1_1851 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YLM1_1861 tRNA-His K14226 tRNA-His; tRNA His
D YLM1_1841 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YLM1_1848 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1842 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1862 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1855 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YLM1_1840 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1871 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1864 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1852 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YLM1_1858 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YLM1_1847 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1846 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1854 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1859 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YLM1_1843 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YLM1_1857 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YLM1_1867 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_1868 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_1853 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_0499 glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YLM1_1651 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit A GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YLM1_1471 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit B GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YLM1_0926 glutamyl-tRNA(Gln) amidotransferase subunit D GatD K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7]
D YLM1_0925 glutamyl-tRNA(Gln) amidotransferase subunit E GatE K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
D YLM1_0164 alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YLM1_0558 aspartyl-tRNA synthetase AspS K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D YLM1_0290 glycyl-tRNA synthetase GlyS K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D YLM1_1688 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YLM1_1397 seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YLM1_0432 pyridoxal phosphate enzyme K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YLM1_1057 cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YLM1_0519 methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YLM1_1069 valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YLM1_1797 leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YLM1_1549 isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YLM1_0013 lysyl-tRNA synthetase LysS K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D YLM1_1697 arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YLM1_0513 prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YLM1_0655 histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YLM1_1044 phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YLM1_1072 phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YLM1_0249 tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YLM1_0995 tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:mol03060]
D YLM1_0461 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YLM1_1179 protein export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YLM1_1178 protein export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YLM1_1513 signal recognition particle SRP54 protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YLM1_0076 signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D YLM1_0156 preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D YLM1_1032 signal recognition particle SRP19 protein K03105 SRP19; signal recognition particle subunit SRP19
D YLM1_1798 ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D YLM1_1696 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:mol04122]
D YLM1_1054 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YLM1_0636 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YLM1_0034 molybdopterin cofactor biosynthesis protein A MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YLM1_1148 molybdenum cofactor biosynthesis protein C MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YLM1_1242 molybdenum cofactor biosynthesis protein B MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YLM1_0165 thiamine biosynthesis ATP pyrophosphatase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YLM1_0227 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:mol03050]
D YLM1_0950 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit
D YLM1_0844 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D YLM1_1414 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:mol03018]
D YLM1_1510 exosome complex RNA-binding protein Csl4 K07573 CSL4; exosome complex component CSL4
D YLM1_0842 exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
D YLM1_0840 exosome complex RNA-binding protein Rrp42 K12589 RRP42; exosome complex component RRP42
D YLM1_0841 exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YLM1_0488 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YLM1_1479 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:mol03030]
D YLM1_0351 DNA primase DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D YLM1_1295 ribonuclease HII RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YLM1_1422 DNA polymerase family B PolB1 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D YLM1_1041 DNA polymerase family B PolB2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D YLM1_1616 DNA polymerase small subunit DP1 PolD1 K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D YLM1_0010 DNA polymerase large subunit DP2 PolD2 K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D YLM1_0252 replicative DNA helicase Mcm K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D YLM1_0527 DNA primase small subunit PriA K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D YLM1_0525 DNA primase large subunit PriB K18882 priL; DNA primase large subunit
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_0729 replication factor C small subunit RfcS K04801 rfcS; replication factor C small subunit
D YLM1_0730 replication factor C large subunit RfcL K04800 rfcL; replication factor C large subunit
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03410 Base excision repair [PATH:mol03410]
D YLM1_1534 8-oxoguanine DNA glycosylase Ogg K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D YLM1_1065 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YLM1_1835 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D YLM1_1801 DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YLM1_1043 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YLM1_0750 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YLM1_1310 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YLM1_1722 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1033 single-stranded DNA exonuclease RecJ related protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
C 03420 Nucleotide excision repair [PATH:mol03420]
D YLM1_0648 excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D YLM1_0736 excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D YLM1_0780 excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D YLM1_0785 excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D YLM1_0753 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03430 Mismatch repair [PATH:mol03430]
D YLM1_0244 DNA mismatch repair ATPase MutS family K07456 mutS2; DNA mismatch repair protein MutS2
D YLM1_0753 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YLM1_0400 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YLM1_0401 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YLM1_1722 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1033 single-stranded DNA exonuclease RecJ related protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03440 Homologous recombination [PATH:mol03440]
D YLM1_1722 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1033 single-stranded DNA exonuclease RecJ related protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
C 03450 Non-homologous end-joining
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
D YLM1_0981 DNA-directed RNA polymerase subunit E'' RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D YLM1_0157 ribosomal protein L24 family K15172 SUPT5H; transcription elongation factor SPT5
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:mol02010]
D YLM1_0508 nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YLM1_0509 nitrate/sulfonate/bicarbonate ABC transporter permease protein K15554 ssuC; sulfonate transport system permease protein
D YLM1_0510 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YLM1_0046 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YLM1_1062 molybdate ABC transporter substrate-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D YLM1_0045 molybdate ABC transporter permease protein K02018 modB; molybdate transport system permease protein
D YLM1_1063 molybdate ABC transporter permease protein ModB K02018 modB; molybdate transport system permease protein
D YLM1_1064 molybdate ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YLM1_0044 molybdate ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YLM1_1682 ABC transporter permease/substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YLM1_1683 ABC transporter ATP binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YLM1_0144 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D YLM1_0207 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D YLM1_0145 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_0206 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_1670 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_0143 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D YLM1_0208 cobalt ABC transporter permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D YLM1_0613 cobalt ABC transporter ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D YLM1_0142 cobalt ABC transporter ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D YLM1_0828 ABC transporter permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D YLM1_0607 cobalt ABC transporter permease protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D YLM1_0957 polysaccharide/polyol phosphate ABC transporter permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D YLM1_0958 polysaccharide/polyol phosphate ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D YLM1_1169 ABC transporter permease protein K19310 bcrB; bacitracin transport system permease protein
D YLM1_1170 ABC transporter ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D YLM1_0825 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YLM1_0826 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YLM1_1118 ABC transporter ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YLM1_1119 ABC transporter ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:mol03070]
D YLM1_1179 protein export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YLM1_1178 protein export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YLM1_0461 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YLM1_0076 signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D YLM1_1513 signal recognition particle SRP54 protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:mol02020]
D YLM1_1045 ATP:dephospho-CoA triphosphoribosyl transferase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D YLM1_0803 nitrogen regulatory protein P-II GlnK K04751 glnB; nitrogen regulatory protein P-II 1
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_1165 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YLM1_1565 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:mol02024]
D YLM1_1826 anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YLM1_1827 anthranilate synthase component II TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YLM1_0577 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YLM1_1091 peptide/nickel ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YLM1_1099 peptide/nickel ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YLM1_1090 peptide/nickel ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YLM1_1098 peptide/nickel ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YLM1_1097 peptide/nickel ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YLM1_1089 peptide/nickel ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YLM1_1088 peptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YLM1_1096 peptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YLM1_1087 peptide/nickel ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YLM1_0461 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YLM1_0076 signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D YLM1_1513 signal recognition particle SRP54 protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance [PATH:mol01502]
D YLM1_0586 cell wall biosynthesis protein phospho-N-acetylmuramoyl-pentapeptide-transferase family K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:mol01000]
C 01001 Protein kinases [BR:mol01001]
D YLM1_1719 universal archaeal protein Kae1/Bud32 K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1]
D YLM1_1319 serine/threonine protein kinase RIO1 family K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C 01009 Protein phosphatases and associated proteins [BR:mol01009]
D YLM1_0251 translation initiation factor aIF-2 beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2
D YLM1_0059 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:mol01002]
D YLM1_0666 type IV leader peptidase family protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D YLM1_0584 hydrogenase maturation protease HycI K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D YLM1_0917 GMP synthase subunit B GuaAb K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YLM1_0919 GMP synthase subunit A GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YLM1_0968 amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YLM1_0372 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_1021 glucosamine-fructose-6-phosphate aminotransferase GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YLM1_0721 asparagine synthase (glutamine-hydrolyzing) AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YLM1_1290 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D YLM1_0001 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D YLM1_0007 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D YLM1_1811 methionine aminopeptidase Map K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YLM1_0731 peptidase M48 family K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YLM1_1127 ATP-dependent protease S16 family K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D YLM1_1696 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D YLM1_1145 peptidase S49 family K04773 sppA; protease IV [EC:3.4.21.-]
D YLM1_0844 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D YLM1_1414 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D YLM1_0967 peptidase U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YLM1_0245 peptidase U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YLM1_0246 peptidase U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YLM1_1324 peptidase U62 family K03592 pmbA; PmbA protein
D YLM1_1183 peptidase U62 family K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:mol01003]
D YLM1_0522 cell wall biosynthesis protein phospho-N-acetylmuramoyl-pentapeptide-transferase family K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]
D YLM1_0063 oligosaccharyl transferase K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21]
D YLM1_1647 cell wall biosynthesis glycosyl transferase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:mol01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:mol01011]
D YLM1_1785 cell wall biosynthesis protein Mur ligase family K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YLM1_0749 cell wall biosynthesis protein Mur ligase family K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YLM1_0587 cell wall biosynthesis protein Mur ligase family K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YLM1_0586 cell wall biosynthesis protein phospho-N-acetylmuramoyl-pentapeptide-transferase family K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YLM1_1711 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YLM1_1290 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
C 01004 Lipid biosynthesis proteins [BR:mol01004]
D YLM1_0935 acetyl-CoA synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YLM1_1056 ADP-dependent acetyl-CoA synthetase Acs K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D YLM1_0577 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:mol01006]
D YLM1_0489 bifunctional short chain isoprenyl diphosphate synthase IdsA K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
C 01007 Amino acid related enzymes [BR:mol01007]
D YLM1_0013 lysyl-tRNA synthetase LysS K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D YLM1_0499 glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YLM1_0249 tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YLM1_0995 tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YLM1_1057 cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YLM1_1697 arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YLM1_0519 methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YLM1_1549 isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YLM1_1069 valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YLM1_1797 leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YLM1_0558 aspartyl-tRNA synthetase AspS K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D YLM1_0655 histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YLM1_0290 glycyl-tRNA synthetase GlyS K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D YLM1_1397 seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YLM1_0513 prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YLM1_1688 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YLM1_0164 alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YLM1_1044 phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YLM1_1072 phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YLM1_0414 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0179 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YLM1_0501 LL-diaminopimelate aminotransferase DapL K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D YLM1_0126 histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YLM1_1482 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YLM1_1393 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YLM1_1524 acetylornithine aminotransferase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YLM1_1796 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YLM1_0543 glutamate-1-semialdehyde-2,1-aminomutase HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YLM1_1712 branched-chain amino acid aminotransferase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:mol03000]
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_0058 TATA-box binding protein Tbp K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D YLM1_1408 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YLM1_0539 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D YLM1_0816 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D YLM1_1477 ArsR family transcriptional regulator K07721 K07721; ArsR family transcriptional regulator
D YLM1_0997 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D YLM1_0819 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D YLM1_0433 biotin-acetyl-CoA-carboxylase ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YLM1_0047 transcriptional repressor of nif and glnA operons NrpR K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI
D YLM1_1692 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D YLM1_0760 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D YLM1_1202 orotate phosphoribosyltransferase PyrE K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D YLM1_1678 molybdate transport system regulatory protein ModE K02019 modE; molybdate transport system regulatory protein
D YLM1_1216 ArsR family transcriptional regulator K07725 csa3; CRISPR-associated protein Csa3
D YLM1_0328 transcriptional regulator K07728 K07728; putative transcriptional regulator
D YLM1_0002 transcriptional regulator K07729 K07729; putative transcriptional regulator
D YLM1_0100 transcriptional regulator K07729 K07729; putative transcriptional regulator
D YLM1_1034 MarR family transcriptional regulator K07730 K07730; putative transcriptional regulator
D YLM1_0582 nickel responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D YLM1_1315 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
C 03021 Transcription machinery [BR:mol03021]
D YLM1_0356 transcription initiation factor TFIIB Tfb1 K03124 TFIIB; transcription initiation factor TFIIB
D YLM1_1081 transcription initiation factor TFIIB Tfb K03124 TFIIB; transcription initiation factor TFIIB
D YLM1_0058 TATA-box binding protein Tbp K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D YLM1_0152 transcription initiation factor TFIIE alpha subunit Tfe K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D YLM1_0981 DNA-directed RNA polymerase subunit E'' RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D YLM1_0157 ribosomal protein L24 family K15172 SUPT5H; transcription elongation factor SPT5
D YLM1_1272 transcription elongation factor NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA
D YLM1_1275 DNA-directed RNA polymerase subunit A' RpoA1 K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D YLM1_1274 DNA-directed RNA polymerase subunit A'' RpoA2 K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D YLM1_1276 DNA-directed RNA polymerase subunit B' RpoB1 K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D YLM1_1277 DNA-directed RNA polymerase subunit B'' RpoB2 K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D YLM1_0475 DNA-directed RNA polymerase subunit D RpoD K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D YLM1_0982 DNA-directed RNA polymerase subunit E' RpoE1 K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D YLM1_1516 DNA-directed RNA polymerase subunit F RpoF K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D YLM1_1278 DNA-directed RNA polymerase subunit H RpoH K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D YLM1_0480 DNA-directed RNA polymerase subunit K RpoK K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D YLM1_1509 DNA-directed RNA polymerase subunit L RpoL K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D YLM1_0479 DNA-directed RNA polymerase subunit N RpoN K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D YLM1_0838 DNA-directed RNA polymerase subunit P RpoP 847a K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
D YLM1_1508 transcription factor S Tfs K03057 tfs; transcription factor S
D YLM1_0213 transcription factor S Tfs K03057 tfs; transcription factor S
C 03019 Messenger RNA biogenesis [BR:mol03019]
D YLM1_0981 DNA-directed RNA polymerase subunit E'' RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D YLM1_0157 ribosomal protein L24 family K15172 SUPT5H; transcription elongation factor SPT5
D YLM1_0105 cell division control protein Cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase
D YLM1_0138 cell division protein pelota PelA K06965 PELO; protein pelota
D YLM1_0366 peptide chain release factor aRF1 K03265 ETF1; peptide chain release factor subunit 1
D YLM1_1268 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
D YLM1_1510 exosome complex RNA-binding protein Csl4 K07573 CSL4; exosome complex component CSL4
D YLM1_0842 exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
D YLM1_0841 exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41
D YLM1_0840 exosome complex RNA-binding protein Rrp42 K12589 RRP42; exosome complex component RRP42
D YLM1_0678 ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YLM1_0488 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YLM1_1479 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YLM1_0801 DEAD/DEAH box helicase domain-containing protein K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-]
C 03041 Spliceosome [BR:mol03041]
D YLM1_0278 ZPR1 zinc-finger domain-containing protein K06874 ZPR1; zinc finger protein ZPR1
C 03011 Ribosome [BR:mol03011]
D YLM1_0133 ribosomal protein S3Ae Rps3ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D YLM1_0450 ribosomal protein S4e Rps4e K02987 RP-S4e; small subunit ribosomal protein S4e
D YLM1_0985 ribosomal protein S6e Rps6e K02991 RP-S6e; small subunit ribosomal protein S6e
D YLM1_1038 ribosomal protein S8e Rps8e K02995 RP-S8e; small subunit ribosomal protein S8e
D YLM1_1141 ribosomal protein S17e Rps17e K02962 RP-S17e; small subunit ribosomal protein S17e
D YLM1_0068 ribosomal protein S19e Rps19e K02966 RP-S19e; small subunit ribosomal protein S19e
D YLM1_0978 ribosomal protein S24e Rps24e K02974 RP-S24e; small subunit ribosomal protein S24e
D YLM1_1503 ribosomal protein S27e Rps27e K02978 RP-S27e; small subunit ribosomal protein S27e
D YLM1_0977 ribosomal protein S27ae Rps27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D YLM1_0989 ribosomal protein S28e Rps28e K02979 RP-S28e; small subunit ribosomal protein S28e
D YLM1_0438 ribosomal protein L4p Rpl4p K02930 RP-L4e; large subunit ribosomal protein L4e
D YLM1_0990 ribosomal protein L7Ae Rpl7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D YLM1_1354 ribosomal protein L10e Rpl10e K02866 RP-L10e; large subunit ribosomal protein L10e
D YLM1_0466 ribosomal protein L14e Rpl14e K02875 RP-L14e; large subunit ribosomal protein L14e
D YLM1_0851 ribosomal protein L15e Rpl15e K02877 RP-L15e; large subunit ribosomal protein L15e
D YLM1_0476 ribosomal protein L18e Rpl18e K02883 RP-L18e; large subunit ribosomal protein L18e
D YLM1_0456 ribosomal protein L19e Rpl19e K02885 RP-L19e; large subunit ribosomal protein L19e
D YLM1_1515 ribosomal protein L21e Rpl21e K02889 RP-L21e; large subunit ribosomal protein L21e
D YLM1_0988 ribosomal protein L24e Rpl24e K02896 RP-L24e; large subunit ribosomal protein L24e
D YLM1_1273 ribosomal protein L30e Rpl30e K02908 RP-L30e; large subunit ribosomal protein L30e
D YLM1_0072 ribosomal protein L31e Rpl31e K02910 RP-L31e; large subunit ribosomal protein L31e
D YLM1_0455 ribosomal protein L32e Rpl32e K02912 RP-L32e; large subunit ribosomal protein L32e
D YLM1_0464 ribosomal protein L34e Rpl34e K02915 RP-L34e; large subunit ribosomal protein L34e
D YLM1_0792 ribosomal protein L37e Rpl37e 800a K02922 RP-L37e; large subunit ribosomal protein L37e
D YLM1_0839 ribosomal protein L37Ae Rpl37ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D YLM1_0071 ribosomal protein L39e Rpl39e K02924 RP-L39e; large subunit ribosomal protein L39e
D YLM1_0766 ribosomal protein L40e Rpl40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D YLM1_1504 ribosomal protein L44e Rpl44e K02929 RP-L44e; large subunit ribosomal protein L44e
D YLM1_0483 ribosomal protein S2P Rps2p K02967 RP-S2; small subunit ribosomal protein S2
D YLM1_0443 ribosomal protein S3P Rps3p K02982 RP-S3; small subunit ribosomal protein S3
D YLM1_0473 ribosomal protein S4P Rps4p K02986 RP-S4; small subunit ribosomal protein S4
D YLM1_0458 ribosomal protein S5P Rps5p K02988 RP-S5; small subunit ribosomal protein S5
D YLM1_1270 ribosomal protein S7P Rps7p K02992 RP-S7; small subunit ribosomal protein S7
D YLM1_0453 ribosomal protein S8P Rps8p K02994 RP-S8; small subunit ribosomal protein S8
D YLM1_0478 ribosomal protein S9P Rps9p K02996 RP-S9; small subunit ribosomal protein S9
D YLM1_1267 ribosomal protein S10P Rps10p K02946 RP-S10; small subunit ribosomal protein S10
D YLM1_0474 ribosomal protein S11P Rps11p K02948 RP-S11; small subunit ribosomal protein S11
D YLM1_1271 ribosomal protein S12P Rps12p K02950 RP-S12; small subunit ribosomal protein S12
D YLM1_0472 ribosomal protein S13P Rps13p K02952 RP-S13; small subunit ribosomal protein S13
D YLM1_0452 ribosomal protein S14P Rps14p K02954 RP-S14; small subunit ribosomal protein S14
D YLM1_1721 ribosomal protein S15P Rps15p K02956 RP-S15; small subunit ribosomal protein S15
D YLM1_0447 ribosomal protein S17P Rps17p K02961 RP-S17; small subunit ribosomal protein S17
D YLM1_0441 ribosomal protein S19P Rps19p K02965 RP-S19; small subunit ribosomal protein S19
D YLM1_0159 ribosomal protein L1P Rpl1p K02863 RP-L1; large subunit ribosomal protein L1
D YLM1_0440 ribosomal protein L2P Rpl2p K02886 RP-L2; large subunit ribosomal protein L2
D YLM1_0437 ribosomal protein L3P Rpl3p K02906 RP-L3; large subunit ribosomal protein L3
D YLM1_0451 ribosomal protein L5P Rpl5p K02931 RP-L5; large subunit ribosomal protein L5
D YLM1_0454 ribosomal protein L6P Rpl6p K02933 RP-L6; large subunit ribosomal protein L6
D YLM1_0160 acidic ribosomal protein P0 RplPO K02864 RP-L10; large subunit ribosomal protein L10
D YLM1_0158 ribosomal protein L11P Rpl11p K02867 RP-L11; large subunit ribosomal protein L11
D YLM1_0477 ribosomal protein L13P Rpl13p K02871 RP-L13; large subunit ribosomal protein L13
D YLM1_0448 ribosomal protein L14P Rpl14p K02874 RP-L14; large subunit ribosomal protein L14
D YLM1_0460 ribosomal protein L15P Rpl15p K02876 RP-L15; large subunit ribosomal protein L15
D YLM1_0457 ribosomal protein L18P Rpl18p K02881 RP-L18; large subunit ribosomal protein L18
D YLM1_0442 ribosomal protein L22P Rpl22p K02890 RP-L22; large subunit ribosomal protein L22
D YLM1_0439 ribosomal protein L23P Rpl23p K02892 RP-L23; large subunit ribosomal protein L23
D YLM1_0449 ribosomal protein L24P Rpl24p K02895 RP-L24; large subunit ribosomal protein L24
D YLM1_0444 ribosomal protein L29P Rpl29p K02904 RP-L29; large subunit ribosomal protein L29
D YLM1_0459 ribosomal protein L30P Rpl30p K02907 RP-L30; large subunit ribosomal protein L30
D YLM1_0161 ribosomal protein L12P Rpl12p K02869 RP-L12; large subunit ribosomal protein L12
D YLM1_0074 ribosomal protein LX RplX K02944 RP-LX; large subunit ribosomal protein LX
D YLM1_1873 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1874 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1876 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1879 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1875 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YLM1_1878 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:mol03009]
D YLM1_1426 pre-mRNA splicing ribonucleoprotein PRP31 K14564 NOP56; nucleolar protein 56
D YLM1_1501 H/ACA RNA-protein complex component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D YLM1_0837 ribosomal biogeneis protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D YLM1_0678 ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YLM1_1318 RNA-binding protein K06961 KRR1; ribosomal RNA assembly protein
D YLM1_1319 serine/threonine protein kinase RIO1 family K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YLM1_0065 hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
D YLM1_0767 hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D YLM1_0180 ATPase RIL K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
D YLM1_1185 GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
D YLM1_0446 ribonuclease P subunit P29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D YLM1_0847 ribonuclease P subunit P14 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D YLM1_0848 ribonuclease P subunit P30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D YLM1_0073 translation initiation factor aIF-6 K03264 EIF6; translation initiation factor 6
D YLM1_0250 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3
D YLM1_0843 exosome subunit K14574 SDO1; ribosome maturation protein SDO1
D YLM1_0105 cell division control protein Cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase
D YLM1_1427 fibrillarin FlpA K04795 flpA; fibrillarin-like pre-rRNA processing protein
D YLM1_0990 ribosomal protein L7Ae Rpl7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D YLM1_0355 H/ACA RNA-protein complex component Gar1 K07569 gar1; RNA-binding protein
D YLM1_1272 transcription elongation factor NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA
D YLM1_1518 dimethyladenosine transferase KsgA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YLM1_0254 ribosomal RNA large subunit methyltransferase J RrmJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YLM1_1260 ribosomal-protein-alanine acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YLM1_0177 Sua5/YciO/YrdC/YwlC family translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YLM1_0067 RNA-binding protein K07574 yhbY; RNA-binding protein
D YLM1_1499 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:mol03016]
D YLM1_0446 ribonuclease P subunit P29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D YLM1_0847 ribonuclease P subunit P14 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D YLM1_0848 ribonuclease P subunit P30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D YLM1_0066 ribonuclease P subunit RPR2 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D YLM1_0274 ribonuclease Z Rnz K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D YLM1_0096 tRNA-splicing ligase RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D YLM1_0092 hypothetical protein K24956 ZBTB8OS; protein archease
D YLM1_1268 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
D YLM1_0499 glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YLM1_0513 prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YLM1_1549 isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YLM1_1797 leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YLM1_0519 methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YLM1_1697 arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YLM1_0164 alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YLM1_0290 glycyl-tRNA synthetase GlyS K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D YLM1_1688 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YLM1_1397 seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YLM1_1057 cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YLM1_1069 valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YLM1_0655 histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YLM1_1044 phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YLM1_1072 phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YLM1_0249 tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YLM1_0995 tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YLM1_1532 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YLM1_1155 MiaB-like tRNA modifying enzyme K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
D YLM1_1407 N2,N2-dimethylguanosine tRNA methyltransferase Trm1 K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D YLM1_1227 Met-10+ like-protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YLM1_1787 tRNA(1-methyladenosine) methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D YLM1_1614 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YLM1_0794 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YLM1_1283 tRNA-modifying enzyme K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D YLM1_1413 Met-10+ like-protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D YLM1_1167 tRNA pseudouridine synthase A TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YLM1_0467 H/ACA RNA-protein complex component Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YLM1_1819 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YLM1_1514 pseudouridylate synthase K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D YLM1_1054 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YLM1_1152 histone acetyltransferase ELP3 family K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D YLM1_0177 Sua5/YciO/YrdC/YwlC family translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YLM1_0321 tRNA(His) guanylyltransferase ThgL K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D YLM1_0532 tRNA nucleotidyltransferase Cca K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
D YLM1_0996 tRNA intron endonuclease EndA K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D YLM1_0533 2'-5' RNA ligase LigT K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YLM1_0013 lysyl-tRNA synthetase LysS K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D YLM1_0558 aspartyl-tRNA synthetase AspS K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D YLM1_0293 RNA methyltransferase TrmH family K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D YLM1_0942 RNA methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D YLM1_1348 tRNA ribose 2'-O-methyltransferase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D YLM1_1719 universal archaeal protein Kae1/Bud32 K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1]
D YLM1_0913 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
D YLM1_0836 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1
D YLM1_0112 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YLM1_0113 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YLM1_0114 7-cyano-7-deazaguanosine biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YLM1_1008 archaeosine tRNA-ribosyltransferase TgtA K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D YLM1_0165 thiamine biosynthesis ATP pyrophosphatase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YLM1_0329 DNA-binding protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
C 03012 Translation factors [BR:mol03012]
D YLM1_1320 translation initiation factor aIF-1A K03236 EIF1A; translation initiation factor 1A
D YLM1_0445 translation initiation factor aSUI1 K03113 EIF1; translation initiation factor 1
D YLM1_1502 translation initiation factor aIF-2 alpha subunit K03237 EIF2S1; translation initiation factor 2 subunit 1
D YLM1_0251 translation initiation factor aIF-2 beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2
D YLM1_0984 translation initiation factor aIF-2 gamma subunit K03242 EIF2S3; translation initiation factor 2 subunit 3
D YLM1_1196 translation initiation factor aIF-5A K03263 EIF5A; translation initiation factor 5A
D YLM1_0986 translation initiation factor aIF-2 InfB K03243 EIF5B; translation initiation factor 5B
D YLM1_0073 translation initiation factor aIF-6 K03264 EIF6; translation initiation factor 6
D YLM1_1268 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
D YLM1_0187 translation elongation factor aEF-1 beta K03232 EEF1B; elongation factor 1-beta
D YLM1_1269 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2
D YLM1_1511 diphthamide biosynthesis protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108]
D YLM1_0669 ATP-binding protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14]
D YLM1_0366 peptide chain release factor aRF1 K03265 ETF1; peptide chain release factor subunit 1
D YLM1_1519 SAM-dependent methyltransferase HemK-related protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YLM1_0182 peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]
C 03110 Chaperones and folding catalysts [BR:mol03110]
D YLM1_1479 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YLM1_1135 thermosome subunit K22447 cct; archaeal chaperonin
D YLM1_1000 thermosome subunit K22447 cct; archaeal chaperonin
D YLM1_1480 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YLM1_1478 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D YLM1_1186 heat shock protein Hsp20/alpha crystallin family K13993 HSP20; HSP20 family protein
D YLM1_0075 prefoldin alpha subunit PfdA K04797 pfdA; prefoldin alpha subunit
D YLM1_0835 prefoldin beta subunit PfdB K04798 pfdB; prefoldin beta subunit
D YLM1_1107 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D YLM1_1123 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D YLM1_1122 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D YLM1_1526 peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YLM1_1357 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
C 04131 Membrane trafficking [BR:mol04131]
D YLM1_0987 nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YLM1_0105 cell division control protein Cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase
D YLM1_1798 ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D YLM1_0156 preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D YLM1_1268 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
C 04121 Ubiquitin system [BR:mol04121]
D YLM1_0766 ribosomal protein L40e Rpl40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D YLM1_0977 ribosomal protein S27ae Rps27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
C 03051 Proteasome [BR:mol03051]
D YLM1_0844 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D YLM1_1414 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D YLM1_0950 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit
C 03032 DNA replication proteins [BR:mol03032]
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D YLM1_1501 H/ACA RNA-protein complex component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D YLM1_0351 DNA primase DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D YLM1_0090 cdc6 family replication initiation protein Cdc6-2 K10725 cdc6A; archaeal cell division control protein 6
D YLM1_1610 cdc6 family replication initiation protein Cdc6-1 K10725 cdc6A; archaeal cell division control protein 6
D YLM1_0252 replicative DNA helicase Mcm K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D YLM1_0527 DNA primase small subunit PriA K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D YLM1_0525 DNA primase large subunit PriB K18882 priL; DNA primase large subunit
D YLM1_1505 hypothetical protein K09723 ginS; DNA replication factor GINS
D YLM1_1295 ribonuclease HII RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YLM1_1422 DNA polymerase family B PolB1 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D YLM1_1041 DNA polymerase family B PolB2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D YLM1_0010 DNA polymerase large subunit DP2 PolD2 K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D YLM1_1616 DNA polymerase small subunit DP1 PolD1 K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D YLM1_0730 replication factor C large subunit RfcL K04800 rfcL; replication factor C large subunit
D YLM1_0729 replication factor C small subunit RfcS K04801 rfcS; replication factor C small subunit
D YLM1_1316 DNA topoisomerase VI subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D YLM1_1317 DNA topoisomerase VI subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
D YLM1_0062 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:mol03036]
D YLM1_0678 ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YLM1_0436 hypothetical protein K09142 SPOUT1; methyltransferase [EC:2.1.1.-]
D YLM1_0991 archaeal histone K24450 hmf; DNA-binding protein
D YLM1_1154 archaeal histone K24450 hmf; DNA-binding protein
D YLM1_0155 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YLM1_1294 cell shape determining protein MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YLM1_1656 cell division ATPase MinD K03496 parA; chromosome partitioning protein
D YLM1_0350 tyrosine recombinase XerC K04763 xerD; integrase/recombinase XerD
D YLM1_1083 chromosome partitioning ATPase ParA K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:mol03400]
D YLM1_1061 6-O-methylguanine DNA methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YLM1_1835 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YLM1_1534 8-oxoguanine DNA glycosylase Ogg K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D YLM1_1065 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YLM1_1506 DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D YLM1_0121 ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D YLM1_1557 replication factor A K07466 RFA1; replication factor A1
D YLM1_1523 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YLM1_1603 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YLM1_0380 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YLM1_0593 dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YLM1_1801 DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YLM1_1043 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YLM1_0750 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YLM1_1310 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YLM1_1722 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_1033 single-stranded DNA exonuclease RecJ related protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YLM1_0648 excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D YLM1_0736 excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D YLM1_0780 excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D YLM1_0785 excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D YLM1_0753 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YLM1_0244 DNA mismatch repair ATPase MutS family K07456 mutS2; DNA mismatch repair protein MutS2
D YLM1_0400 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YLM1_0401 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YLM1_0761 DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50
D YLM1_0762 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11
D YLM1_0392 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D YLM1_0699 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D YLM1_1556 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
D YLM1_0178 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB
D YLM1_1469 archaeal holliday junction resolvase Hjc K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D YLM1_0763 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YLM1_0764 NurA domain-containing protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-]
D YLM1_1149 DEAD/DEAH box helicase domain-containing protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D YLM1_0062 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YLM1_1537 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YLM1_0261 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D YLM1_0916 hypothetical protein K22585 nreA; DNA repair protein NreA
C 03029 Mitochondrial biogenesis [BR:mol03029]
D YLM1_0446 ribonuclease P subunit P29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D YLM1_0847 ribonuclease P subunit P14 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D YLM1_0848 ribonuclease P subunit P30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D YLM1_0249 tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YLM1_1797 leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YLM1_0290 glycyl-tRNA synthetase GlyS K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D YLM1_1697 arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YLM1_1651 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit A GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YLM1_1471 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit B GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YLM1_1479 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YLM1_1478 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D YLM1_1480 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YLM1_1054 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YLM1_1083 chromosome partitioning ATPase ParA K03593 mrp; ATP-binding protein involved in chromosome partitioning
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:mol02000]
D YLM1_0825 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YLM1_0826 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YLM1_1118 ABC transporter ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YLM1_1119 ABC transporter ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YLM1_0046 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YLM1_1062 molybdate ABC transporter substrate-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D YLM1_0045 molybdate ABC transporter permease protein K02018 modB; molybdate transport system permease protein
D YLM1_1063 molybdate ABC transporter permease protein ModB K02018 modB; molybdate transport system permease protein
D YLM1_1064 molybdate ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YLM1_0044 molybdate ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YLM1_0508 nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YLM1_0509 nitrate/sulfonate/bicarbonate ABC transporter permease protein K15554 ssuC; sulfonate transport system permease protein
D YLM1_0510 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YLM1_1682 ABC transporter permease/substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YLM1_1683 ABC transporter ATP binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YLM1_1238 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YLM1_1237 amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YLM1_1236 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YLM1_1091 peptide/nickel ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YLM1_1099 peptide/nickel ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YLM1_1090 peptide/nickel ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YLM1_1098 peptide/nickel ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YLM1_1097 peptide/nickel ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YLM1_1089 peptide/nickel ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YLM1_1088 peptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YLM1_1096 peptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YLM1_1087 peptide/nickel ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YLM1_0019 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YLM1_1347 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YLM1_0020 iron ABC transporter permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YLM1_1345 iron ABC transporter permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YLM1_1344 iron ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YLM1_0021 iron ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YLM1_0144 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D YLM1_0207 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D YLM1_0143 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D YLM1_0208 cobalt ABC transporter permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D YLM1_0145 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_0206 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_1670 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D YLM1_0613 cobalt ABC transporter ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D YLM1_0142 cobalt ABC transporter ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D YLM1_0827 hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D YLM1_0609 hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D YLM1_0828 ABC transporter permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D YLM1_0607 cobalt ABC transporter permease protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D YLM1_0608 cobalt ABC transporter ATP-binding protein CbiO K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D YLM1_0829 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D YLM1_0957 polysaccharide/polyol phosphate ABC transporter permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D YLM1_0958 polysaccharide/polyol phosphate ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D YLM1_1169 ABC transporter permease protein K19310 bcrB; bacitracin transport system permease protein
D YLM1_1170 ABC transporter ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D YLM1_0758 ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D YLM1_0759 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YLM1_1624 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YLM1_1623 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YLM1_1366 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YLM1_1222 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_1706 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_1208 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_1833 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_1496 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_0941 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YLM1_0856 transporter MIP family K02440 glpF; glycerol uptake facilitator
D YLM1_0397 ion transport protein K10716 kch; voltage-gated potassium channel
D YLM1_1395 ion transport protein K10716 kch; voltage-gated potassium channel
D YLM1_1462 potassium channel protein K10716 kch; voltage-gated potassium channel
D YLM1_0804 ammonium transporter Amt K03320 amt; ammonium transporter, Amt family
D YLM1_0029 formate/nitrite transporter FdhC K21993 fdhC; formate transporter
D YLM1_1620 divalent cation transporter mgtE family K07244 K07244; mgtE-like transporter
D YLM1_1298 transporter MotA/TolQ/ExbB proton channel family K03561 exbB; biopolymer transport protein ExbB
D YLM1_1297 transporter ExbD/Tol family K03559 exbD; biopolymer transport protein ExbD
D YLM1_0169 hypothetical protein K24915 TMEM175; TMEM175 potassium channel family protein
D YLM1_1402 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YLM1_1815 adhesin-like protein K12516 bigA; putative surface-exposed virulence protein
D YLM1_0640 adhesin-like protein K21449 ata; trimeric autotransporter adhesin
D YLM1_0809 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YLM1_0204 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D YLM1_1403 K+-dependent Na+/Ca+ exchanger K07301 yrbG; cation:H+ antiporter
D YLM1_0530 transporter SDF family K07862 sstT; serine/threonine transporter
D YLM1_1825 potassium uptake protein TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D YLM1_1466 potassium uptake protein TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D YLM1_1467 potassium uptake protein TrkA family K03499 trkA; trk/ktr system potassium uptake protein
D YLM1_0868 xanthine/uracil permease K02824 uraA; uracil permease
D YLM1_1646 transporter permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D YLM1_0136 voltage-gated chloride channel protein K03281 clcA; chloride channel protein, CIC family
D YLM1_1798 ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D YLM1_1313 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B
D YLM1_1679 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B
D YLM1_1555 transporter K24180 mleP; malate permease and related proteins
D YLM1_1437 branched-chain amino acid transport protein AzlC K26605 azlC; branched chain amino acid efflux pump
D YLM1_1436 branched-chain amino acid transport protein AzlD K26606 azlD; branched chain amino acid efflux pump
D YLM1_0202 ferrous iron transport protein A FeoA K04758 feoA; ferrous iron transport protein A
D YLM1_0203 ferrous iron transport protein B FeoB K04759 feoB; ferrous iron transport protein B
D YLM1_0821 ferrous iron transport protein B FeoB K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:mol02044]
D YLM1_0189 type II secretion system protein E GspE K07332 flaI; archaeal flagellar protein FlaI
D YLM1_0190 type II secretion system protein F GspF K07333 flaJ; archaeal flagellar protein FlaJ
D YLM1_0311 type II secretion system protein F GspF K07333 flaJ; archaeal flagellar protein FlaJ
D YLM1_0666 type IV leader peptidase family protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D YLM1_1815 adhesin-like protein K12516 bigA; putative surface-exposed virulence protein
D YLM1_1179 protein export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YLM1_1178 protein export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YLM1_0461 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YLM1_1513 signal recognition particle SRP54 protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YLM1_0076 signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D YLM1_0156 preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D YLM1_1032 signal recognition particle SRP19 protein K03105 SRP19; signal recognition particle subunit SRP19
C 02042 Bacterial toxins [BR:mol02042]
D YLM1_0535 transporter TDT family K11041 eta; exfoliative toxin A/B
D YLM1_1402 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:mol02022]
D YLM1_0299 LytTr DNA-binding domain-containing protein K02477 K02477; two-component system, LytTR family, response regulator
C 02035 Bacterial motility proteins [BR:mol02035]
D YLM1_0189 type II secretion system protein E GspE K07332 flaI; archaeal flagellar protein FlaI
D YLM1_0190 type II secretion system protein F GspF K07333 flaJ; archaeal flagellar protein FlaJ
D YLM1_0311 type II secretion system protein F GspF K07333 flaJ; archaeal flagellar protein FlaJ
D YLM1_0666 type IV leader peptidase family protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:mol04812]
D YLM1_0484 phosphomevalonate decarboxylase K06990 MEMO1; MEMO1 family protein
D YLM1_1294 cell shape determining protein MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YLM1_0155 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YLM1_1656 cell division ATPase MinD K03496 parA; chromosome partitioning protein
C 04147 Exosome [BR:mol04147]
D YLM1_0481 phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YLM1_1281 phosphoglycerate kinase Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YLM1_1268 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
D YLM1_1269 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2
D YLM1_1479 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YLM1_0053 flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D YLM1_0624 inosine-5'-monophosphate dehydrogenase GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YLM1_0977 ribosomal protein S27ae Rps27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D YLM1_0105 cell division control protein Cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase
D YLM1_0577 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YLM1_1129 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D YLM1_0462 adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D YLM1_1512 adenine phosphoribosyltransferase Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YLM1_0976 argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YLM1_1457 argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YLM1_0048 glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YLM1_1046 delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YLM1_0323 phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YLM1_0141 glutathione-disulfide reductase Gor K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YLM1_1282 triose-phosphate isomerase TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:mol02048]
D YLM1_0392 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D YLM1_0699 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D YLM1_0393 CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D YLM1_0698 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D YLM1_0390 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YLM1_1216 ArsR family transcriptional regulator K07725 csa3; CRISPR-associated protein Csa3
D YLM1_0391 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D YLM1_1435 hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D YLM1_0386 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D YLM1_0387 hypothetical protein K19114 csh1; CRISPR-associated protein Csh1
D YLM1_0388 CRISPR-associated protein CT1132 family K19115 csh2; CRISPR-associated protein Csh2
D YLM1_0389 CRISPR-associated protein Cas5 Hmari subtype K19116 cas5h; CRISPR-associated protein Cas5h
D YLM1_0691 CRISPR-associated protein Csm1 family K07016 csm1; CRISPR-associated protein Csm1
D YLM1_0692 CRISPR-associated protein Csm2 family K19138 csm2; CRISPR-associated protein Csm2
D YLM1_0693 CRISPR-associated RAMP protein Csm3 family K09002 csm3; CRISPR-associated protein Csm3
D YLM1_0694 CRISPR-associated RAMP protein Csm4 family K19139 csm4; CRISPR-associated protein Csm4
D YLM1_0695 CRISPR-associated RAMP protein Csm5 family K19140 csm5; CRISPR-associated protein Csm5
D YLM1_0727 restriction endonuclease K07448 mrr; restriction system protein
D YLM1_1002 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D YLM1_0155 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YLM1_1294 cell shape determining protein MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YLM1_0499 glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YLM1_1241 hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
D YLM1_1054 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:mol01504]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:mol03100]
D YLM1_1849 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YLM1_1844 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YLM1_1866 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1869 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1872 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1870 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YLM1_1865 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YLM1_1856 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YLM1_1860 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YLM1_1845 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YLM1_1863 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YLM1_1850 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YLM1_1851 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YLM1_1861 tRNA-His K14226 tRNA-His; tRNA His
D YLM1_1841 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YLM1_1848 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1842 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1862 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YLM1_1855 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YLM1_1840 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1871 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1864 tRNA-Met K14230 tRNA-Met; tRNA Met
D YLM1_1852 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YLM1_1858 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YLM1_1847 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1846 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1854 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YLM1_1859 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YLM1_1843 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YLM1_1857 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YLM1_1867 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_1868 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_1853 tRNA-Val K14237 tRNA-Val; tRNA Val
D YLM1_1876 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1879 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YLM1_1875 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YLM1_1878 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YLM1_1873 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1874 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YLM1_1877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YLM1_1201 oxidoreductase GFO/IDH/MOCA family K18855 E1.1.1.374; UDP-N-acetylglucosamine 3-dehydrogenase [EC:1.1.1.374]
D YLM1_0295 indolepyruvate ferredoxin oxidoreductase alpha subunit IorA K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D YLM1_0296 indolepyruvate ferredoxin oxidoreductase beta subunit IorB K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D YLM1_0537 NADPH-dependent F420 reductase NpdG K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D YLM1_0946 NADPH-dependent F420 reductase NpdG K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D YLM1_1543 flavodoxin K19817 fprA; coenzyme F420H2 oxidase [EC:1.5.3.22]
D YLM1_0883 flavodoxin/metallo-beta-lactamase domain-containing protein K19817 fprA; coenzyme F420H2 oxidase [EC:1.5.3.22]
D YLM1_0518 NADH oxidase Nox K17870 nox1; NADH oxidase (H2O2-forming) [EC:1.6.3.3]
D YLM1_1581 zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YLM1_0093 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YLM1_1050 desulfoferrodoxin Dfx K05919 dfx; superoxide reductase [EC:1.15.1.2]
D YLM1_0647 ferritin-like domain-containing protein K02217 ftnA; ferritin [EC:1.16.3.2]
D YLM1_1159 molybdenum cofactor biosynthesis protein MoaA-like protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]
D YLM1_0125 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YLM1_1010 pyruvate-formate lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YLM1_1632 glycyl-radical enzyme activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YLM1_1219 diphthine synthase DphB K20215 dph5; diphthine synthase [EC:2.1.1.98]
D YLM1_1384 methanogeneis marker protein 10 K25222 mmp10; [methyl coenzyme M reductase]-L-arginine C-5-methyltransferase [EC:2.1.1.379]
D YLM1_1650 hexapeptide-repeat containing acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D YLM1_1147 glycosyl transferase GT4 family K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D YLM1_0596 deoxyhypusine synthase Dys K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D YLM1_1475 phosphoribosylaminoimidazole carboxylase PurE K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D YLM1_0148 RNA-binding protein K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-]
D YLM1_0232 radical SAM domain-containing protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]
D YLM1_0104 dolichol kinase K18678 VTE5; phytol kinase [EC:2.7.1.182]
D YLM1_0409 2-phosphoglycerate kinase Pgk2B K05715 2PGK; 2-phosphoglycerate kinase [EC:2.7.2.16]
D YLM1_0176 phosphatidylglycerophosphate synthase PgsA K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D YLM1_0807 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YLM1_0228 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D YLM1_0363 hydrolase TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YLM1_0550 hydrolase TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YLM1_0267 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-]
D YLM1_1189 phosphosugar-binding protein K10708 frlB; fructoselysine 6-phosphate deglycase [EC:3.5.-.-]
D YLM1_1461 carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YLM1_0307 PP-loop family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D YLM1_1341 hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D YLM1_0309 methanogeneis marker protein 1 K24409 ycaO; thioglycine synthase [EC:6.2.2.1]
D YLM1_0561 cyclic 2,3-diphosphoglycerate-synthetase K05716 CPGS; cyclic 2,3-diphosphoglycerate synthase [EC:6.5.1.9]
D YLM1_1262 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D YLM1_0815 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YLM1_1314 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D YLM1_1460 sugar fermentation stimulation protein SfsA K06206 sfsA; sugar fermentation stimulation protein A
D YLM1_0622 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D YLM1_1542 rubrerythrin Rbr K19824 fprB; rubrerythrin
D YLM1_0326 formate dehydrogenase accessory protein FdhD K02379 fdhD; FdhD protein
D YLM1_1053 NifU-like FeS cluster assembly scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D YLM1_1230 nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D YLM1_0910 energy-converting hydrogenase A subunit A EhaA K14092 ehaA; energy-converting hydrogenase A subunit A
D YLM1_0909 energy-converting hydrogenase A subunit B EhaB K14093 ehaB; energy-converting hydrogenase A subunit B
D YLM1_0908 energy-converting hydrogenase A subunit C EhaC K14094 ehaC; energy-converting hydrogenase A subunit C
D YLM1_0907 energy-converting hydrogenase A subunit D EhaD K14095 ehaD; energy-converting hydrogenase A subunit D
D YLM1_0906 energy-converting hydrogenase A subunit E EhaE K14096 ehaE; energy-converting hydrogenase A subunit E
D YLM1_0905 energy-converting hydrogenase A subunit F EhaF K14097 ehaF; energy-converting hydrogenase A subunit F
D YLM1_0904 energy-converting hydrogenase A subunit G EhaG K14098 ehaG; energy-converting hydrogenase A subunit G
D YLM1_0903 energy-converting hydrogenase A subunit H EhaH K14099 ehaH; energy-converting hydrogenase A subunit H
D YLM1_0902 energy-converting hydrogenase A subunit I EhaI K14100 ehaI; energy-converting hydrogenase A subunit I
D YLM1_0901 energy-converting hydrogenase A subunit J EhaJ K14101 ehaJ; energy-converting hydrogenase A subunit J
D YLM1_0900 energy-converting hydrogenase A subunit K EhaK K14102 ehaK; energy-converting hydrogenase A subunit K
D YLM1_0899 energy-converting hydrogenase A subunit L EhaL K14103 ehaL; energy-converting hydrogenase A subunit L
D YLM1_0898 energy-converting hydrogenase A subunit M EhaM K14104 ehaM; energy-converting hydrogenase A subunit M
D YLM1_0897 energy-converting hydrogenase A subunit N EhaN K14105 ehaN; energy-converting hydrogenase A subunit N
D YLM1_0896 energy-converting hydrogenase A subunit O EhaO K14106 ehaO; energy-converting hydrogenase A subunit O
D YLM1_0895 energy-converting hydrogenase A subunit P EhaP K14107 ehaP; energy-converting hydrogenase A subunit P
D YLM1_0894 energy-converting hydrogenase A subunit Q EhaQ K14108 ehaQ; energy-converting hydrogenase A subunit Q
D YLM1_0893 energy-converting hydrogenase A subunit R EhaR K14109 ehaR; energy-converting hydrogenase A subunit R
D YLM1_1454 energy-converting hydrogenase B subunit A EhbA K14110 ehbA; energy-converting hydrogenase B subunit A
D YLM1_1453 energy-converting hydrogenase B subunit B EhbB K14111 ehbB; energy-converting hydrogenase B subunit B
D YLM1_1452 energy-converting hydrogenase B subunit C EhbC K14112 ehbC; energy-converting hydrogenase B subunit C
D YLM1_1451 energy-converting hydrogenase B subunit D EhbD K14113 ehbD; energy-converting hydrogenase B subunit D
D YLM1_1450 energy-converting hydrogenase B subunit E EhbE K14114 ehbE; energy-converting hydrogenase B subunit E
D YLM1_1449 energy-converting hydrogenase B subunit F EhbF K14115 ehbF; energy-converting hydrogenase B subunit F
D YLM1_1448 energy-converting hydrogenase B subunit G EhbG K14116 ehbG; energy-converting hydrogenase B subunit G
D YLM1_1447 energy-converting hydrogenase B subunit H EhbH K14117 ehbH; energy-converting hydrogenase B subunit H
D YLM1_1446 energy-converting hydrogenase B subunit I EhbI K14118 ehbI; energy-converting hydrogenase B subunit I
D YLM1_1445 energy-converting hydrogenase B subunit J EhbJ K14119 ehbJ; energy-converting hydrogenase B subunit J
D YLM1_1444 energy-converting hydrogenase B subunit K EhbK K14120 ehbK; energy-converting hydrogenase B subunit K
D YLM1_1443 energy-converting hydrogenase B subunit L EhbL K14121 ehbL; energy-converting hydrogenase B subunit L
D YLM1_1442 energy-converting hydrogenase B subunit M EhbM K14122 ehbM; energy-converting hydrogenase B subunit M
D YLM1_1441 energy-converting hydrogenase B subunit N EhbN K14123 ehbN; energy-converting hydrogenase B subunit N
D YLM1_1440 energy-converting hydrogenase B subunit O EhbO K14124 ehbO; energy-converting hydrogenase B subunit O
D YLM1_1439 energy-converting hydrogenase B subunit P EhbP K14125 ehbP; energy-converting hydrogenase B subunit P
D YLM1_1438 energy-converting hydrogenase B subunit Q EhbQ K06862 ehbQ; energy-converting hydrogenase B subunit Q
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D YLM1_1465 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D YLM1_0032 molybdopterin-guanine dinucleotide biosynthesis protein B MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D YLM1_1627 hypothetical protein K07068 DUF35; scaffold protein (connect acetoacetyl-CoA thiolase and HMG-CoA synthase)
C 99999 Others
D YLM1_0308 TfuA-like protein K24410 tfuA; TfuA protein
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YLM1_0951 transcriptional regulator K03627 MBF1; putative transcription factor
D YLM1_1689 ribonuclease inhibitor K03623 yhcO; ribonuclease inhibitor
D YLM1_0793 LSM domain-containing protein K04796 RUXX; small nuclear ribonucleoprotein
D YLM1_1645 RNA-binding S1 domain-containing protein K06959 tex; protein Tex
D YLM1_0595 transcriptional regulator with CBS domains K07744 K07744; transcriptional regulator
C 99974 Translation
D YLM1_0367 RNA-binding protein K07572 K07572; putative nucleotide binding protein
D YLM1_1517 RNA-binding protein K07572 K07572; putative nucleotide binding protein
D YLM1_0435 ribosomal protein L11 methyltransferase PrmA K07579 K07579; putative methylase
D YLM1_0186 RNA-binding protein K07580 K07580; Zn-ribbon RNA-binding protein
D YLM1_0850 exosome subunit K07581 K07581; RNA-binding protein
D YLM1_0070 tRNA methyltransferase subunit K07585 K07585; tRNA methyltransferase
C 99975 Protein processing
D YLM1_0146 hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D YLM1_1326 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D YLM1_1037 hydrogenase maturation factor HypE K04655 hypE; hydrogenase expression/formation protein HypE
D YLM1_1476 hydrogenase maturation factor HypF K04656 hypF; hydrogenase maturation protein HypF
D YLM1_1488 hydrogenase expression/formation protein HypE K07388 K07388; hydrogenase expression/formation protein
D YLM1_1309 ATPase K07392 PRS2; AAA family ATPase
C 99976 Replication and repair
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YLM1_1245 transporter SSS family K03307 TC.SSS; solute:Na+ symporter, SSS family
D YLM1_0078 Na+-dependent transporter SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YLM1_0079 Na+-dependent transporter SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YLM1_0681 Na+-dependent transporter SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YLM1_0797 Na+-dependent transporter SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D YLM1_1094 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K07321 cooC; CO dehydrogenase maturation factor
C 99993 Cell motility
C 99995 Signaling proteins
D YLM1_0069 DNA-binding protein K06875 PDCD5; programmed cell death protein 5
C 99992 Structural proteins
D YLM1_0231 hypothetical protein K21908 hdeD; membrane protein HdeD
D YLM1_1396 hypothetical protein K21908 hdeD; membrane protein HdeD
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YLM1_0653 PilT family ATPase K06865 K06865; ATPase
D YLM1_0754 DEAD/DEAH box helicase domain-containing protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D YLM1_1040 HAD superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D YLM1_1365 FeS assembly protein SufBD K09014 sufB; Fe-S cluster assembly protein SufB
D YLM1_0682 LemA family protein K03744 lemA; LemA protein
D YLM1_1006 YhgE/Pip-like protein K01421 yhgE; putative membrane protein
D YLM1_0188 hypothetical protein K08971 K08971; putative membrane protein
D YLM1_0738 hypothetical protein K08974 K08974; putative membrane protein
D YLM1_0429 hypothetical protein K08979 K08979; putative membrane protein
C 99997 Function unknown
D YLM1_0955 radical SAM domain-containing protein K06871 K06871; uncharacterized protein
D YLM1_0632 HD domain-containing protein K06885 K06885; uncharacterized protein
D YLM1_1490 alpha/beta family hydrolase K06889 K06889; uncharacterized protein
D YLM1_0349 ATP-grasp domain-containing protein K06913 K06913; uncharacterized protein
D YLM1_0379 archaeal ATPase K06921 K06921; uncharacterized protein
D YLM1_0382 archaeal ATPase K06921 K06921; uncharacterized protein
D YLM1_0101 hypothetical protein K06933 K06933; uncharacterized protein
D YLM1_1304 hypothetical protein K06933 K06933; uncharacterized protein
D YLM1_0147 HD domain-containing protein K06950 K06950; uncharacterized protein
D YLM1_1636 GNAT family acetyltransferase K06976 K06976; uncharacterized protein
D YLM1_1456 hypothetical protein K06987 K06987; uncharacterized protein
D YLM1_1838 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D YLM1_1541 ArsR family transcriptional regulator K07013 K07013; uncharacterized protein
D YLM1_1415 RNA-metabolising metallo-beta-lactamase K07041 K07041; uncharacterized protein
D YLM1_0268 amidohydrolase K07045 K07045; uncharacterized protein
D YLM1_0285 hydrolase TatD family K07051 K07051; uncharacterized protein
D YLM1_0221 hypothetical protein K07075 K07075; uncharacterized protein
D YLM1_1223 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_0493 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_0050 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_0087 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_1584 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_0743 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_1525 oxidoreductase aldo/keto reductase family K07079 K07079; uncharacterized protein
D YLM1_0359 TauE family transporter K07090 K07090; uncharacterized protein
D YLM1_0408 metallophosphoesterase K07096 K07096; uncharacterized protein
D YLM1_0086 metallophosphoesterase K07098 K07098; uncharacterized protein
D YLM1_0151 tryptophan-binding regulator TrpY K07103 K07103; uncharacterized protein
D YLM1_0279 2-phosphoglycerate kinase Pgk2 K07105 K07105; uncharacterized protein
D YLM1_1058 hypothetical protein K07108 K07108; uncharacterized protein
D YLM1_1239 methanogeneis marker protein 2 K07123 K07123; uncharacterized protein
D YLM1_1248 ATPase K07133 K07133; uncharacterized protein
D YLM1_0384 ATPase K07133 K07133; uncharacterized protein
D YLM1_0385 ATPase K07133 K07133; uncharacterized protein
D YLM1_0394 ATPase K07133 K07133; uncharacterized protein
D YLM1_0396 ATPase K07133 K07133; uncharacterized protein
D YLM1_1705 ATPase K07133 K07133; uncharacterized protein
D YLM1_0107 ATPase K07133 K07133; uncharacterized protein
D YLM1_0689 ATPase K07133 K07133; uncharacterized protein
D YLM1_1112 ATPase K07133 K07133; uncharacterized protein
D YLM1_0975 hypothetical protein K07134 K07134; uncharacterized protein
D YLM1_0315 tRNA binding domain-containing protein K07135 K07135; uncharacterized protein
D YLM1_0983 hypothetical protein K07158 K07158; uncharacterized protein
D YLM1_1500 proteasome assembly chaperone K07159 K07159; uncharacterized protein
D YLM1_0225 von Willebrand factor type A domain-containing protein K07161 K07161; uncharacterized protein
D YLM1_1349 hypothetical protein K09003 K09003; uncharacterized protein
D YLM1_1551 hypothetical protein K09005 K09005; uncharacterized protein
D YLM1_0154 hypothetical protein K09126 K09126; uncharacterized protein
D YLM1_1522 hypothetical protein K09138 K09138; uncharacterized protein
D YLM1_1184 AMMECR1 domain-containing protein K09141 K09141; uncharacterized protein
D YLM1_0642 hypothetical protein K09154 K09154; uncharacterized protein
D YLM1_1190 hypothetical protein K09154 K09154; uncharacterized protein
D YLM1_1261 hypothetical protein K09713 K09713; uncharacterized protein
D YLM1_1434 hypothetical protein K09717 K09717; uncharacterized protein
D YLM1_1613 hypothetical protein K09721 K09721; uncharacterized protein
D YLM1_0520 hypothetical protein K09724 K09724; uncharacterized protein
D YLM1_1121 hypothetical protein K09726 K09726; uncharacterized protein
D YLM1_0952 hypothetical protein K09727 K09727; uncharacterized protein
D YLM1_0175 hypothetical protein K09728 K09728; uncharacterized protein
D YLM1_0770 hypothetical protein K09729 K09729; uncharacterized protein
D YLM1_0515 hypothetical protein K09730 K09730; uncharacterized protein
D YLM1_0963 hypothetical protein K09738 K09738; uncharacterized protein
D YLM1_0880 hypothetical protein K09740 K09740; uncharacterized protein
D YLM1_0168 hypothetical protein K01163 K01163; uncharacterized protein
D YLM1_0756 exonuclease-like protein K07502 yprB; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 23, 2024