+F Repair protein KO #

  DNA Repair and Recombination Proteins - Microbacterium oleivorans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BWL13_02339 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BWL13_01944 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BWL13_00424 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BWL13_02138 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BWL13_02778 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BWL13_02054 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BWL13_02036 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BWL13_00011 rppH_1; RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_01000 mutT3; Putative 8-oxo-dGTP diphosphatase 3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_01737 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_01339 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BWL13_02339 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BWL13_01944 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BWL13_00424 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BWL13_02863 phrB; (6-4) photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E BWL13_02138 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BWL13_02340 alkA; putative bifunctional transcriptional activator/DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BWL13_02778 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BWL13_02054 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BWL13_00193 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BWL13_01545 fpg1; Formamidopyrimidine-DNA glycosylase 1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BWL13_02252 fpg2; putative formamidopyrimidine-DNA glycosylase-like protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BWL13_00384 nei1_1; Endonuclease 8 1 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E BWL13_01468 nei1_2; Endonuclease 8 1 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E BWL13_02855 nei1_3; Endonuclease 8 1 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BWL13_02247 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BWL13_02687 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E BWL13_01500 ligA; DNA ligase A K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BWL13_01437 polA_2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BWL13_00112 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BWL13_01088 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BWL13_01086 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E BWL13_01089 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E BWL13_01688 uvrD2; ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_01691 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_02372 uvrD1; ATP-dependent DNA helicase UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_01437 polA_2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BWL13_01500 ligA; DNA ligase A K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BWL13_02521 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BWL13_02520 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BWL13_02480 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BWL13_01414 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BWL13_01795 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E BWL13_01762 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BWL13_01763 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BWL13_01059 dnaE1; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BWL13_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BWL13_01207 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BWL13_01245 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BWL13_00788 dnaX_2; DNA polymerase III subunit gamma/tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BWL13_01130 polC_1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BWL13_01754 polC_2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BWL13_00762 dnaX_1; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BWL13_01500 ligA; DNA ligase A K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BWL13_01688 uvrD2; ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_01691 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_02372 uvrD1; ATP-dependent DNA helicase UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BWL13_02911 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BWL13_01482 ssb1; Single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BWL13_00935 recA; Protein RecA K03553 recA; recombination protein RecA E BWL13_01375 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BWL13_01376 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BWL13_01374 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BWL13_01416 priA; putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BWL13_00550 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BWL13_00549 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BWL13_00935 recA; Protein RecA K03553 recA; recombination protein RecA E BWL13_00293 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BWL13_00003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BWL13_01550 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BWL13_01265 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BWL13_00763 recR; Recombination protein RecR K06187 recR; recombination protein RecR E BWL13_00989 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BWL13_01375 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BWL13_01376 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BWL13_01374 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E BWL13_00550 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BWL13_00549 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E BWL13_00716 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BWL13_01653 ku; Non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E BWL13_01654 ligD_2; Multifunctional non-homologous end joining protein LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E BWL13_00643 ligD_1; Multifunctional non-homologous end joining DNA repair protein LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BWL13_00006 gyrA_1; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BWL13_01334 gyrA_2; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BWL13_00005 gyrB_1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BWL13_01330 gyrB_2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BWL13_00786 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F BWL13_00142 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BWL13_02769 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BWL13_01265 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BWL13_00763 recR; Recombination protein RecR K06187 recR; recombination protein RecR F BWL13_01500 ligA; DNA ligase A K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BWL13_00185 recQ_1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BWL13_00511 recQ_2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BWL13_00112 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BWL13_01088 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BWL13_01086 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BWL13_01495 dinB_1; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BWL13_00935 recA; Protein RecA K03553 recA; recombination protein RecA D BWL13_00947 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BWL13_00989 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BWL13_02026 dinB_2; DNA polymerase IV K14161 imuB; protein ImuB D BWL13_02025 dnaE2; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BWL13_02911 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BWL13_01482 ssb1; Single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein D BWL13_00936 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BWL13_00385 deaD_1; ATP-dependent RNA helicase DeaD K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BWL13_00011 rppH_1; RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_01000 mutT3; Putative 8-oxo-dGTP diphosphatase 3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_01737 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BWL13_00859 mutT1; putative 8-oxo-dGTP diphosphatase 1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D BWL13_00991 act; Methanol dehydrogenase activator K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D BWL13_01339 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BWL13_01898 nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BWL13_01897 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024