+D Transcription factors KO #

  Transcription Factors - Methylobacterium oryzae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D MOC_5382 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D MOC_5429 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D MOC_3342 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D MOC_5576 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D MOC_5242 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D MOC_3640 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D MOC_5225 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D MOC_5571 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D MOC_4072 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D MOC_5084 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D MOC_5569 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D MOC_0796 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MOC_3631 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D MOC_4082 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family D MOC_2592 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D MOC_1677 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D MOC_3919 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D MOC_5507 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D MOC_1359 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D MOC_4404 phnF; Phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D MOC_5539 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D MOC_2952 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D MOC_0828 GntR family transcriptional regulatorwith aminotransferase domain protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D MOC_0722 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MOC_1530 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MOC_1615 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MOC_2377 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MOC_5646 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MOC_2180 Transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D MOC_1995 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D MOC_2169 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D MOC_1897 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D MOC_6196 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D MOC_2185 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D MOC_2736 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D MOC_6266 LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 C MarR family D MOC_2844 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D MOC_3730 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D MOC_0843 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D MOC_5854 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D MOC_2947 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D MOC_4107 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D MOC_2255 Cobalamin B12-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D MOC_4724 Putative Coenzyme B12-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D MOC_3508 Ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D MOC_3052 Fur family ferric uptake regulator K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D MOC_0376 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D MOC_0474 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MOC_3057 Cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MOC_3239 Cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MOC_3781 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D MOC_4675 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D MOC_3006 Crp/Fnr family transcriptional regulator K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D MOC_5878 Crp/Fnr family transcriptional regulator K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D MOC_2992 Crp/Fnr family transcriptional regulator K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D MOC_4586 Crp/Fnr family transcriptional regulator K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein C Rrf2 family D MOC_5876 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D MOC_4760 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MOC_3774 arsR; Regulatory protein ArsR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D MOC_4320 Shikimate kinase I K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator C PadR family C Other families D MOC_2006 DtxR family iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D MOC_2434 Biotin-acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D MOC_5201 Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D MOC_5234 Two component, sigma54 specific, transcriptional regulator, Fis family K02584 nifA; Nif-specific regulatory protein D MOC_5792 Putative ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D MOC_2551 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D MOC_3432 Bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D MOC_2855 FMN-binding domain-containing protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D MOC_4221 bolA; Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D MOC_4798 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MOC_4233 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D MOC_3311 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D MOC_3900 TenA family transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D MOC_0829 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D MOC_4472 Putative transcriptional regulator K07735 algH; putative transcriptional regulator D MOC_6139 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D MOC_4518 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D MOC_3290 Sel1 domain protein repeat-containing protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0