+F Repair protein KO
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DNA Repair and Recombination Proteins - Marasmius oreades (fairy-ring mushroom)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D E1B28_002559 uncharacterized protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D E1B28_004238 uncharacterized protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E E1B28_011487 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E E1B28_004957 uncharacterized protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E E1B28_004921 uncharacterized protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E E1B28_008916 uncharacterized protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E E1B28_002335 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E E1B28_008938 uncharacterized protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E E1B28_011676 uncharacterized protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E E1B28_007658 uncharacterized protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F E1B28_007428 POL3; DNA-directed DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F E1B28_008602 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2
F E1B28_007688 uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
F E1B28_007782 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
F E1B28_009423 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F E1B28_005988 uncharacterized protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F E1B28_006000 uncharacterized protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F E1B28_012589 uncharacterized protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E E1B28_003273 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E E1B28_005628 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E E1B28_007083 FEN1; Elongation of fatty acids protein 2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E E1B28_001063 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E E1B28_012121 uncharacterized protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other BER factors
E E1B28_009580 uncharacterized protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E E1B28_008668 uncharacterized protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E E1B28_002656 uncharacterized protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E E1B28_013753 uncharacterized protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E E1B28_009824 uncharacterized protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F E1B28_010326 uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F E1B28_000778 uncharacterized protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F E1B28_013366 RBX1; RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F E1B28_009615 uncharacterized protein K10609 CUL4; cullin 4
F E1B28_012575 uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F E1B28_004309 uncharacterized protein K15082 RAD7; DNA repair protein RAD7
F E1B28_003995 uncharacterized protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F E1B28_009714 RPB1; DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F E1B28_000817 RPB2; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F E1B28_000492 uncharacterized protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F E1B28_007693 uncharacterized protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F E1B28_011511 uncharacterized protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F E1B28_000884 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F E1B28_000819 RPB7; DNA-directed RNA polymerase II subunit K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F E1B28_001231 uncharacterized protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F E1B28_006378 uncharacterized protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F E1B28_005563 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F E1B28_006211 uncharacterized protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F E1B28_013366 RBX1; RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F E1B28_009615 uncharacterized protein K10609 CUL4; cullin 4
F E1B28_012575 uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
E Other TCR factor
F E1B28_008828 uncharacterized protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E E1B28_011456 PTR8; transcription factor TFIIH complex ERCC-3 subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E E1B28_008801 RAD15; DNA-dependent ATPase of the nucleotide excision repair factor 4 complex K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E E1B28_000656 uncharacterized protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E E1B28_000522 uncharacterized protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E E1B28_000675 uncharacterized protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E E1B28_002684 uncharacterized protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E E1B28_007608 CRK1; cyclin-dependent serine/threonine protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E E1B28_001213 uncharacterized protein K06634 CCNH; cyclin H
E E1B28_002618 uncharacterized protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E E1B28_009203 uncharacterized protein K07466 RFA1; replication factor A1
E E1B28_008880 uncharacterized protein K10739 RFA2; replication factor A2
E E1B28_013545 uncharacterized protein K10740 RPA3; replication factor A3
D Other NER factors
E E1B28_001339 uncharacterized protein K10847 XPA; DNA-repair protein complementing XP-A cells
E E1B28_000527 uncharacterized protein K10849 ERCC1; DNA excision repair protein ERCC-1
E E1B28_009490 uncharacterized protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E E1B28_009520 uncharacterized protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E E1B28_011162 uncharacterized protein K10846 ERCC5; DNA excision repair protein ERCC-5
E E1B28_001063 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E E1B28_007596 uncharacterized protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E E1B28_011272 uncharacterized protein K03869 CUL3; cullin 3
E E1B28_005854 uncharacterized protein K03872 ELOC; elongin-C
E E1B28_008991 uncharacterized protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E E1B28_002400 uncharacterized protein K08735 MSH2; DNA mismatch repair protein MSH2
E E1B28_008738 uncharacterized protein K08736 MSH3; DNA mismatch repair protein MSH3
E E1B28_000786 uncharacterized protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E E1B28_008298 uncharacterized protein K08734 MLH1; DNA mismatch repair protein MLH1
E E1B28_002951 uncharacterized protein K10858 PMS2; DNA mismatch repair protein PMS2
E E1B28_004670 uncharacterized protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E E1B28_007428 POL3; DNA-directed DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E E1B28_008602 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2
E E1B28_007688 uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
E E1B28_007782 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E E1B28_009423 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E E1B28_009203 uncharacterized protein K07466 RFA1; replication factor A1
E E1B28_008880 uncharacterized protein K10739 RFA2; replication factor A2
E E1B28_013545 uncharacterized protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E E1B28_011187 uncharacterized protein K10754 RFC1; replication factor C subunit 1
E E1B28_007503 RFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E E1B28_008640 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
E E1B28_007296 RFC3; Subunit of heteropentameric Replication factor C (RF-C) K10756 RFC3_5; replication factor C subunit 3/5
E E1B28_011070 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E E1B28_003273 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E E1B28_005628 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E E1B28_006133 uncharacterized protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E E1B28_001063 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E E1B28_008860 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E E1B28_006394 MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E E1B28_012426 uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E E1B28_006394 MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E E1B28_012426 uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E E1B28_001019 RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
E E1B28_002500 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E E1B28_001019 RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
E E1B28_002500 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
E E1B28_006121 uncharacterized protein K10870 RAD51L2; RAD51-like protein 2
E E1B28_001177 uncharacterized protein K10879 XRCC2; DNA-repair protein XRCC2
E E1B28_008601 uncharacterized protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E E1B28_005665 uncharacterized protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E E1B28_008914 RHP54; DNA repair protein rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E E1B28_009953 uncharacterized protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E E1B28_012146 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E E1B28_012146 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E E1B28_000402 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E E1B28_011158 uncharacterized protein K10990 RMI1; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E E1B28_009203 uncharacterized protein K07466 RFA1; replication factor A1
E E1B28_008880 uncharacterized protein K10739 RFA2; replication factor A2
E E1B28_013545 uncharacterized protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E E1B28_006051 PPP4C; Serine/threonine-protein phosphatase 4 catalytic subunit K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E E1B28_008719 uncharacterized protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E E1B28_008744 uncharacterized protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E E1B28_004743 uncharacterized protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E E1B28_004878 uncharacterized protein K22803 SMC5; structural maintenance of chromosomes protein 5
E E1B28_012235 uncharacterized protein K22804 SMC6; structural maintenance of chromosomes protein 6
E E1B28_008692 uncharacterized protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E E1B28_012482 uncharacterized protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E E1B28_000604 uncharacterized protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E E1B28_011549 uncharacterized protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E E1B28_007730 uncharacterized protein K10991 SWI5; DNA repair protein Swi5/Sae3
E E1B28_009984 uncharacterized protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E E1B28_003734 uncharacterized protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E E1B28_003774 uncharacterized protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E E1B28_004685 uncharacterized protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E E1B28_004428 uncharacterized protein K11339 MORF4L1; mortality factor 4-like protein 1
E E1B28_003727 uncharacterized protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E E1B28_000754 uncharacterized protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E E1B28_001588 uncharacterized protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E E1B28_011283 uncharacterized protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E E1B28_001294 uncharacterized protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E E1B28_011792 uncharacterized protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E E1B28_003866 uncharacterized protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E E1B28_006394 MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E E1B28_012426 uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E E1B28_007259 LIG4; DNA ligase (ATP) K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E E1B28_007532 uncharacterized protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E E1B28_013753 uncharacterized protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E E1B28_010183 uncharacterized protein K03513 POLM; DNA polymerase mu [EC:2.7.7.7]
E E1B28_012121 uncharacterized protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E E1B28_008668 uncharacterized protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E E1B28_013519 uncharacterized protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E E1B28_012146 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E E1B28_000402 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E E1B28_011158 uncharacterized protein K10990 RMI1; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E E1B28_001865 uncharacterized protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E E1B28_001019 RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
E E1B28_002500 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
E E1B28_006121 uncharacterized protein K10870 RAD51L2; RAD51-like protein 2
E E1B28_008663 uncharacterized protein K11137 TELO2; telomere length regulation protein
E E1B28_007580 uncharacterized protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E E1B28_003542 PPE1; Protein phosphatase methylesterase 1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E E1B28_008497 uncharacterized protein K23314 WRAP53; telomerase Cajal body protein 1
E E1B28_001299 uncharacterized protein K24752 WDR70; WD repeat-containing protein 70
E E1B28_008860 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D E1B28_011447 uncharacterized protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D E1B28_000740 uncharacterized protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D E1B28_006339 uncharacterized protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D E1B28_001091 uncharacterized protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D E1B28_006214 UBC2; Ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D E1B28_002457 uncharacterized protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D E1B28_001582 uncharacterized protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D E1B28_000896 uncharacterized protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D E1B28_000602 uncharacterized protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D E1B28_006945 SPM2; Ubiquitin-conjugating enzyme spm2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D E1B28_005842 UBC35; Ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D E1B28_003273 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
D E1B28_005628 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
D E1B28_009811 uncharacterized protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D E1B28_000750 uncharacterized protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D E1B28_003967 uncharacterized protein K10903 HUS1; HUS1 checkpoint protein
D E1B28_002438 uncharacterized protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D E1B28_009221 uncharacterized protein K06662 HRAD17; cell cycle checkpoint protein
D E1B28_007503 RFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D E1B28_008640 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
D E1B28_007296 RFC3; Subunit of heteropentameric Replication factor C (RF-C) K10756 RFC3_5; replication factor C subunit 3/5
D E1B28_011070 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D E1B28_002438 uncharacterized protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D E1B28_004668 uncharacterized protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D E1B28_008867 uncharacterized protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D E1B28_004097 uncharacterized protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D E1B28_008663 uncharacterized protein K11137 TELO2; telomere length regulation protein
D E1B28_001443 uncharacterized protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D E1B28_000256 uncharacterized protein K23388 UBL4; ubiquitin-like protein 4
D E1B28_011504 uncharacterized protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D E1B28_004786 uncharacterized protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D E1B28_007361 uncharacterized protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D E1B28_005677 uncharacterized protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D E1B28_002201 uncharacterized protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D E1B28_008762 uncharacterized protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D E1B28_004388 uncharacterized protein K06630 YWHAE; 14-3-3 protein epsilon
D E1B28_004747 uncharacterized protein K06630 YWHAE; 14-3-3 protein epsilon
D E1B28_000231 uncharacterized protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D E1B28_000631 uncharacterized protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D E1B28_004621 uncharacterized protein K24664 FKH; forkhead protein FKH
D E1B28_009688 uncharacterized protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D E1B28_009689 VPS4; Vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D E1B28_011552 uncharacterized protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D E1B28_008739 uncharacterized protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D E1B28_007621 uncharacterized protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D E1B28_012576 uncharacterized protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D E1B28_001934 uncharacterized protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D E1B28_002529 uncharacterized protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D E1B28_013530 uncharacterized protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D E1B28_000827 uncharacterized protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D E1B28_008567 uncharacterized protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D E1B28_001334 uncharacterized protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D E1B28_003122 PRP46; pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D E1B28_004937 uncharacterized protein K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D E1B28_012105 CDC22; ribonucleoside reductase large subunit Cdc22 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D E1B28_004465 RNR2_1; Ribonucleotide-diphosphate reductase (RNR), small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D E1B28_004466 RNR2_2; Ribonucleotide-diphosphate reductase (RNR), small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D E1B28_002559 uncharacterized protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D E1B28_004238 uncharacterized protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E E1B28_011487 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E E1B28_000462 uncharacterized protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E E1B28_004921 uncharacterized protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E E1B28_009867 uncharacterized protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E E1B28_002335 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E E1B28_011212 uncharacterized protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E E1B28_011212 uncharacterized protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024