+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Mus pahari (shrew mouse)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 110333253 Rnmt; mRNA cap guanine-N7 methyltransferase isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 110338665 Rngtt; mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 110328829 Cdk7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 110337841 Cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 110337588 Cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 110318917 Fam103a1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 110322910 Ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 110329642 Ncbp2; nuclear cap-binding protein subunit 2 isoform X1 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 110337428 Nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 110316140 Cpsf7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 110326107 Cpsf6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 110318689 Clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 110333172 Pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 110334446 Cpsf1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 110324215 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 110324958 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 110313220 Cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 110332573 Cpsf4l; LOW QUALITY PROTEIN: putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 110331031 Fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 110332884 Wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 110327980 Wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 110312794 Ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110317198 Ppp1ca; serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110324329 Ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110323073 Ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 110318300 Cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 110313070 Cstf2t; cleavage stimulation factor subunit 2 tau variant isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110313285 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110318477 Cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 110336469 Sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 110318180 Snrpb; small nuclear ribonucleoprotein-associated proteins B and B' isoform X1 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 110326273 Snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 110322267 Snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 110326773 Snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 110317045 Snrpg; small nuclear ribonucleoprotein G isoform X1 K11099 SNRPG; small nuclear ribonucleoprotein G
E 110323591 Lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 110332226 Lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 110324215 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 110324958 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 110313070 Cstf2t; cleavage stimulation factor subunit 2 tau variant isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110313285 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110336469 Sympk; symplekin K06100 SYMPK; symplekin
E 110330538 Slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 110338738 Casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 110317292 transcription elongation factor SPT4-A-like K15171 SUPT4H1; transcription elongation factor SPT4
E 110332188 Supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 110334059 Supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 110325286 Mettl3; N6-adenosine-methyltransferase 70 kDa subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 110319735 Mettl14; N6-adenosine-methyltransferase subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 110335714 methyltransferase-like protein 4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 110336037 Mettl4; LOW QUALITY PROTEIN: methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 110331579 Mettl16; methyltransferase-like protein 16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 110338460 Wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 110313903 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 110337022 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 110338636 Kiaa1429; protein virilizer homolog K22910 VIRMA; protein virilizer
E 110327963 Rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 110319955 Rbm15; putative RNA-binding protein 15 isoform X1 K13190 RBM15; RNA-binding protein 15
E 110325382 Zc3h13; zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 110324527 Cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 110312782 Papolb; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110330194 Papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110323997 Papola; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110328838 Papd4; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 110316854 Tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 110322177 Bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 110325051 Rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 110337304 Fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 110332179 Alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 110323474 Tardbp; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 110331560 Dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 110333645 Kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 110319089 Mettl8; methyltransferase-like protein 8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 110329928 Mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 110327581 Fam46a; protein FAM46A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 110323743 Fam46b; protein FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 110320324 Fam46c; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 110314178 Fam46d; protein FAM46D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 110324995 Zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 110339196 Srrt; serrate RNA effector molecule homolog isoform X6 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 110320325 Rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 110316567 Magohb; protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 110323400 Magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 110322222 aly/REF export factor 2 K12881 THOC4; THO complex subunit 4
E 110321368 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 110321369 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 110315425 LOW QUALITY PROTEIN: THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 110331971 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 110335531 Ddx39b; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 110331127 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 110316314 Ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 110338721 LOW QUALITY PROTEIN: coiled-coil domain-containing protein 174-like K25178 CCDC174; coiled-coil domain-containing protein 174
E 110332485 Casc3; LOW QUALITY PROTEIN: protein CASC3 K14323 CASC3; protein CASC3
E 110325550 Sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 110324457 Pnn; pinin K13114 PNN; pinin
E 110325592 Acin1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 110337927 Rnps1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 110322803 Srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 110333130 Thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 110314236 Thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 110333888 Thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 110322222 aly/REF export factor 2 K12881 THOC4; THO complex subunit 4
E 110321368 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 110321369 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 110315425 LOW QUALITY PROTEIN: THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 110331971 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 110330386 Thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 110338054 Thoc6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 110325607 Thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 110336576 Pcid2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 110317098 Sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 110334637 Eny2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 110313669 Cetn2; centrin-2 K10840 CETN2; centrin-2
E 110328964 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 110326463 Mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 110321533 Tpr; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 110317752 Rae1; mRNA export factor K14298 RAE1; mRNA export factor
E 110316450 Sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 110326573 Nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 110331889 Nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 110338164 Nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 110316681 nuclear pore complex protein Nup50-like K14295 NUP50; nuclear pore complex protein Nup50
E 110334698 Nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 110330492 Nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 110324392 Nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 110331214 Nup88; nuclear pore complex protein Nup88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 110337205 Nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 110338561 Nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 110326295 Nup107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 110337339 Nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 110317512 Nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 110333619 Nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 110328788 Nup155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 110317962 Nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 110318367 Nup35; nucleoporin NUP53 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 110314207 Nup205; nuclear pore complex protein Nup205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 110316438 Nup210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 110320557 Nup210l; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 110318458 Nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 110339096 LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121-like K14316 POM121; nuclear pore complex protein Nup121
E 110334217 Pom121l2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 110325267 Nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 110316576 Nupl2; nucleoporin-like protein 2 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 110323001 Ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 110333029 Seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 110326481 E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 110329547 Senp2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 110334713 Aaas; aladin isoform X1 K14320 AAAS; aladin
E 110328964 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 110317690 Gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 110321944 Nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 110314122 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 110313920 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 110313921 nuclear RNA export factor 1-like isoform X1 K14284 NXF; nuclear RNA export factor
E 110313965 Nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
E 110318880 Nxt1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 110335097 NTF2-related export protein 1-like K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 110338902 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 110334888 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 110339045 Ran; GTP-binding nuclear protein Ran isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
E 110327364 Anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 110323268 Anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 110321817 LOW QUALITY PROTEIN: acidic leucine-rich nuclear phosphoprotein 32 family member B-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 110332030 tumor necrosis factor ligand superfamily member 13 isoform X1 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 110336401 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 110322780 Elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110323905 Elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110327295 Elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110333278 LOW QUALITY PROTEIN: FAS-associated factor 2-like K18726 FAF2; FAS-associated factor 2
E 110333698 Faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 110338774 Vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 110324712 Vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 110337612 Tnpo2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 110331012 Xpo1; exportin-1 K14290 XPO1; exportin-1
E 110325042 Xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 110331206 Ranbp17; ran-binding protein 17 K24115 RANBP17; Ran-binding protein 17
E 110334527 Rangap1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 110331837 Taf15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 110321626 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110334033 Eif4e1b; eukaryotic translation initiation factor 4E type 1B isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110319975 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 110313506 eukaryotic initiation factor 4A-I-like K03257 EIF4A; translation initiation factor 4A
E 110330022 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110332672 Eif4a1; eukaryotic initiation factor 4A-I isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110321068 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 110330015 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 110324331 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 110322745 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110334893 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110318370 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110312756 Eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 110336761 Eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 110326431 Eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 110333339 Eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 110330409 Eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 110324420 Angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 110321288 Angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 110319761 Fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110313304 Fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110331426 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 110316336 Cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110331363 Cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110332599 Gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 110330623 Tacc3; LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 110328256 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110332365 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110318251 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110330414 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110313843 Ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110322325 putative ATP-dependent RNA helicase Pl10 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110312746 Gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110322696 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110334482 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 110318873 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110322835 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110313999 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110320461 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 110313904 Pabpc5; polyadenylate-binding protein 5 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110328890 Paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 110332925 Paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 110316294 Paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 110335413 Skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 110322548 Deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 110313622 Mcts1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 110317714 malignant T-cell-amplified sequence 2 K07575 MCTS; malignant T-cell-amplified sequence
E 110313006 Denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 110317250 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110325190 A1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 110326694 Pym1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 110318336 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110331721 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110317769 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110338711 heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110334574 Hnrnpa1; LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110331369 Msi2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 110312825 Msi1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 110326396 Dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 110337873 Hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 110328854 Pelo; protein pelota homolog K06965 PELO; protein pelota
E 110325304 Pabpn1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 110337683 Pabpn1l; embryonic polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 110337354 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 110337355 ATP-dependent RNA helicase DDX19B-like K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 110327510 Ddx25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 110336392 Xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 110326091 Sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 110322895 Rcc1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 110328113 Larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 110333198 Pura; transcriptional activator protein Pur-alpha isoform X1 K21772 PURA; transcriptional activator protein Pur-alpha
E 110330204 Purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 110334703 Poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 110322006 Zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 110336533 Leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 110318421 Patl2; protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 110332929 Etf1; eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 110313606 eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 110329334 Gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 110336868 Upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 110333635 Upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 110313486 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 110336733 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 110336304 Ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 110331422 Ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 110328279 Ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 110337932 Ppp2r1a; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 110325313 Ppp2r2a; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110330369 Ppp2r2c; protein phosphatase 2, regulatory subunit B, gamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110332843 Ppp2r2b; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110318923 Ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110324355 Ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110327434 Ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110321572 Ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110321059 Ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110324840 Ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110324283 Ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110335699 Ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 110318746 Smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 110319882 Smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 110331441 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 110322315 Smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 110331355 Smg8; protein SMG8 K18734 SMG8; protein SMG8
E 110336598 Smg9; protein SMG9 K18735 SMG9; protein SMG9
E 110312746 Gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110322696 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110333741 Secisbp2; selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 110318383 Secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 110336332 Dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 110334585 Gtpbp1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 110317790 Pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 110328022 Myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 110328384 Myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 110333035 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 110316256 Bicd1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 110333644 Bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 110317994 Exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 110331106 Actg1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 110313074 Actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 110332868 Mbp; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 110317616 Vim; vimentin K07606 VIM; vimentin
E 110337609 metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 110337639 metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 110334656 Myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 110336870 Gdf1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 110334766 Tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 110327339 Nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 110319384 Zbp1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 110320938 Fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 110318097 Fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 110335635 Khsrp; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 110328162 Eef1a1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 110318163 Eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 110322418 Eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 110315903 Hnrnpa2b1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 110320291 Hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 110321216 Agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 110317529 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110338681 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110315038 Igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 110326335 Ptbp1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 110313938 polypyrimidine tract-binding protein 1-like isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 110328256 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110332365 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110318251 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110330414 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 110319761 Fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110313304 Fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110331426 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 110316336 Cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110331363 Cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110335073 Pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 110327502 Pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 110326157 Pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 110318829 Caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 110316021 Caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 110322923 Ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 110327930 Xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 110334592 Ago2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110322815 protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110323961 Ago3; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110323159 Ago1; protein argonaute-1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110321626 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110334033 Eif4e1b; eukaryotic translation initiation factor 4E type 1B isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110319975 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 110336868 Upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 110313843 Ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110322325 putative ATP-dependent RNA helicase Pl10 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110327344 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 110320198 Mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110326600 Mex3d; RNA-binding protein MEX3D isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110323869 Mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110333069 Mex3c; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110315921 Fastk; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 110318142 Lsm14b; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 110331940 Lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 110316091 Pcbp1; poly(rC)-binding protein 1 isoform X1 K12889 PCBP1; poly(rC)-binding protein 1
E 110335073 Pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 110322923 Ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 110327504 Limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 110325431 Ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 110328413 Wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 110317250 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110334948 DNA dC->dU-editing enzyme APOBEC-3-like isoform X1 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 110319983 Mov10; putative helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 110323426 Pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 110329036 Tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 110318746 Smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 110319882 Smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 110331441 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 110322315 Smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 110332032 Zfp36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 110324562 Zfp36l1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 110335799 Zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 110326758 Lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 110323861 Lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 110330941 Htt; huntingtin K04533 HD; huntingtin
E 110316340 Ipo8; importin-8 K18755 IPO8; importin-8
E 110326555 Bicc1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 110318336 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110331721 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110317769 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110338711 heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110334574 Hnrnpa1; LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110337220 Prkaca; cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 110320995 Prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 110320358 Larp1b; LOW QUALITY PROTEIN: la-related protein 1B K18757 LARP1; la-related protein 1
E 110331777 Larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 110313142 Atxn2; ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
E 110329734 Atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 110333103 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 110325963 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 110317088 Dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 110336604 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 110335649 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform X1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 110317246 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110336772 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 110317037 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 110337487 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 110326872 Lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 110317022 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 110319541 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 110336348 Klc3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 110324984 Klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 110335434 Klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 110328022 Myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 110328384 Myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 110333035 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 110316306 tubulin alpha-3 chain isoform X1 K07374 TUBA; tubulin alpha
E 110321284 Tuba4a; tubulin alpha-4A chain isoform X1 K07374 TUBA; tubulin alpha
E 110334563 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 110316395 Tuba8; tubulin alpha-8 chain isoform X1 K07374 TUBA; tubulin alpha
E 110316417 tubulin alpha-3 chain isoform X1 K07374 TUBA; tubulin alpha
E 110334627 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 110325235 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 110334021 Tubal3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 110328256 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110332365 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110318251 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110330414 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110332599 Gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 110330623 Tacc3; LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 110332630 Tnrc6c; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110331736 Tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110334677 Tnrc6b; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110337318 Cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 110312938 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110327124 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110336743 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 110316077 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 110330454 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110331230 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110332600 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110336174 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110320016 Kiaa0355; uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 110321685 Dis3l2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 110326541 Pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 110312775 Pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 110326461 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 110328265 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110334911 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 110322156 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 110329679 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 110331935 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 110330409 Eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 110321009 Patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 110328036 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 110337248 Edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 110336168 Nanos2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 110337742 Nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 110333635 Upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 110313486 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 110336733 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 110334794 Trim21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 110328503 Trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 110327913 Polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 110335815 Eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 110325135 ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 110330630 Zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 110339164 Zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 110320929 Ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 110323059 Ythdf2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 110318540 Ythdf1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 110317366 Tia1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 110316213 Tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 110334482 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 110318873 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110322835 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110313999 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110320461 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 110313904 Pabpc5; polyadenylate-binding protein 5 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110317529 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110338681 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110319761 Fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110313304 Fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110331426 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 110319384 Zbp1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 110336401 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 110331227 G3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 110330341 G3bp2; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 110321083 Eif2a; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 110312753 Eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 110313506 eukaryotic initiation factor 4A-I-like K03257 EIF4A; translation initiation factor 4A
E 110330022 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110332672 Eif4a1; eukaryotic initiation factor 4A-I isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110331127 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 110334893 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110318370 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110321068 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 110330015 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 110324331 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 110322745 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110337879 ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110313419 Rps6ka6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110313426 Rps6ka3; ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110323590 Rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110331084 Rack1; receptor of activated protein C kinase 1 isoform X1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 110318405 Traf2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 110321944 Nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 110314122 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 110313920 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 110313921 nuclear RNA export factor 1-like isoform X1 K14284 NXF; nuclear RNA export factor
E 110313282 Hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 110325194 Tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 110334644 Larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 110333782 Larp4b; la-related protein 4B K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 110325963 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 110317088 Dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 110333103 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 110327344 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 110328036 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 110337248 Edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 110321009 Patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 110336604 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 110335649 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform X1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 110317246 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110336772 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 110317037 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 110337487 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 110326872 Lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 110317022 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 110327930 Xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 110318322 Xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 110328254 Nudt16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
E 110328480 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 110327897 Dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 110331566 Helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 110327135 Exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 110318647 Exosc2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 110338846 Exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 110335035 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 110336616 Exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 110337567 Exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 110327777 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 110320444 Exosc8; exosome complex component RRP43 isoform X1 K12586 RRP43; exosome complex component RRP43
E 110320271 Exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 110325236 Dis3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 110327379 Dis3l; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 110322801 Exosc10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 110330723 C1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 110336988 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 110337668 Mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 110336269 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 110337397 Papd5; non-canonical poly(A) RNA polymerase PAPD5 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 110328925 Papd7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 110338750 Zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 110328776 Skiv2l2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 110335413 Skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 110328820 Ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 110327462 Wdr61; WD repeat-containing protein 61 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 110330454 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110331230 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110337318 Cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 110312938 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110327124 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110336743 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 110316077 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 110332600 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110336174 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110321411 Cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 110327358 Cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 110326541 Pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 110312775 Pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 110338358 Pnldc1; poly(A)-specific ribonuclease PNLDC1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 110329518 Parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 110320069 Dhx36; ATP-dependent RNA helicase DHX36 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 110326461 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 110328265 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110334911 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 110322156 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 110329679 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 110331935 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 110332438 Csf2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 110320210 Noct; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 110336695 Eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 110316025 Eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 110327897 Dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 110325385 Pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 110327180 Ireb2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 110331566 Helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 110319071 Helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 110324358 Nrde2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 110325291 Samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 110330659 Samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 110322862 Focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 110315720 eosinophil cationic protein 2-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110314765 eosinophil cationic protein 1-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110315578 eosinophil cationic protein 2-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110325870 ribonuclease 2B K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110314852 LOW QUALITY PROTEIN: non-secretory ribonuclease-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110315658 ribonuclease 2B-like isoform X1 K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110325813 eosinophil cationic protein 2-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110325927 Rnase1; ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110325561 Rnase4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 110325940 Rnase6; ribonuclease K6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 110326025 Rnase11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 110313639 Zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110323475 Zc3h12a; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110338528 Zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110327402 Zc3h12c; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 110328799 Drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 110327641 Rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 110323736 Eno1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110316008 Eno2; gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110331427 Eno3; beta-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110330400 Pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 110327016 Pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 110334301 Pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 110334554 Pfkm; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 110333394 Hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 110321472 Hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 110323826 LOW QUALITY PROTEIN: 60 kDa heat shock protein, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 110318647 Exosc2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 110327135 Exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 110335035 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 110327777 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024