+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Methylibium petroleiphilum
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Mpe_A0650 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D Mpe_A1034 RIO-type serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D Mpe_A2911 putative oligoribonuclease protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Mpe_A0651 putative GTP-binding protein K03595 era; GTPase
C Mpe_A0513 conserved hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Mpe_A3387 putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C Mpe_A3489 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C Mpe_A3491 putative DNA-binding protein K06204 dksA; RNA polymerase-binding transcription factor
C Mpe_A1922 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Mpe_A2949 putative N utilization substance B (transcriptional antiterminator)(l factor) transcription regulator protein K03625 nusB; transcription antitermination protein NusB
C Mpe_A3456 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Mpe_A3042 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Mpe_A0204 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Mpe_A1114 NOL1/NOP2/Sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Mpe_A0272 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Mpe_A3223 putative methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Mpe_A0200 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Mpe_A3786 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Mpe_A0454 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Mpe_A3767 conserved hypothetical transmembrane protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Mpe_A0632 putative transmembrane protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Mpe_A3287 putative hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D Mpe_A1817 putative tRNA/rRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Mpe_A1267 putative ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Mpe_A1342 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Mpe_A3242 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Mpe_A3717 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Mpe_A0147 N6-adenine-specific DNA methylase-like protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Mpe_A3613 Fe-S-cluster redox enzyme,radical SAM family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Mpe_A1999 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Mpe_A3287 putative hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Mpe_A1256 putative 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Mpe_A2195 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Mpe_A2001 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Mpe_A0657 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Mpe_A2003 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Mpe_A2033 putative arginine/proline rich protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C Mpe_A0302 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Mpe_A1105 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Mpe_A1614 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Mpe_A3208 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C Mpe_A1803 Site-specific DNA-methyltransferase (adenine-specific) K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C Mpe_A2568 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C Mpe_A0650 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Mpe_A0656 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C Mpe_A1344 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C Mpe_A0706 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Mpe_A2177 ATP-independent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C Mpe_A0651 putative GTP-binding protein K03595 era; GTPase
C Mpe_A2914 putative ATP/GTP-binding protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Mpe_A1992 putative GTP-binding protein EngA K03977 engA; GTPase
C Mpe_A0513 conserved hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-]
C Mpe_A1990 putative GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C Mpe_A0297 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Mpe_A2721 GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Mpe_A1920 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Mpe_A1923 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C Mpe_A2197 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C Mpe_A1341 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C Mpe_A3240 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C Mpe_A1266 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C Mpe_A2837 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C Mpe_A0226 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
C Mpe_A3166 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024