+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Methanolobus psychrophilus
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
E Mpsy_0972 DNA-directed RNA polymerase, subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4
E Mpsy_1497 nusG; transcription antitermination protein NusG K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
E Mpsy_1293 cell division control protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase
E Mpsy_2001 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
E Mpsy_1228 cell division protein pelota K06965 PELO; protein pelota
C Surveillance factors
D Surveillance complex
E Mpsy_1670 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E Mpsy_1015 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E Mpsy_2112 Exosome subunit Csl4 K07573 CSL4; exosome complex component CSL4
E Mpsy_2728 exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
E Mpsy_2729 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
E Mpsy_2730 3' exoribonuclease K12589 RRP42; exosome complex component RRP42
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E Mpsy_0886 beta-lactamase-like protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Helicases
E Mpsy_2748 DEAD/DEAH box helicase-like protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E Mpsy_2778 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E Mpsy_3041 DEAD/DEAH box helicase domain-containing protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E Mpsy_1389 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E Mpsy_1274 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C Other RNA degradation factors
D Chaperones
E Mpsy_2550 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E Mpsy_2747 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E Mpsy_0920 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E Mpsy_0382 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E Mpsy_2728 exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
E Mpsy_2112 Exosome subunit Csl4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E Mpsy_2729 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
E Mpsy_2730 3' exoribonuclease K12589 RRP42; exosome complex component RRP42
D Others
E Mpsy_0254 DEAD/DEAH box helicase-like protein K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024