+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Methanobrevibacter ruminantium
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
E mru_1481 rpoE2; DNA-directed RNA polymerase subunit E'' RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
E mru_0483 ribosomal protein L24 family K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
E mru_0435 cell division control protein Cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
E mru_0469 pelA; cell division protein pelota PelA K06965 PELO; protein pelota
C Surveillance factors
D Surveillance complex
E mru_0728 peptide chain release factor aRF1 K03265 ETF1; peptide chain release factor subunit 1
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E mru_1805 translation elongation factor aEF-1 alpha K03231 EEF1A; elongation factor 1-alpha
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E mru_0168 csl4; exosome complex RNA-binding protein Csl4 K07573 CSL4; exosome complex component CSL4
E mru_1354 rrp4; exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
E mru_1353 rrp41; exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41
E mru_1352 rrp42; exosome complex RNA-binding protein Rrp42 K12589 RRP42; exosome complex component RRP42
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E mru_1278 rnc; ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
E mru_0923 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
E mru_2127 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Helicases
D Other RNA degradosome components
E mru_0914 eno; phosphopyruvate hydratase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C Other RNA degradation factors
D Chaperones
E mru_2039 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
E mru_1305 DnaK-related protein K04043 dnaK; molecular chaperone DnaK
E mru_1812 DnaK-related protein K04043 dnaK; molecular chaperone DnaK
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E mru_1354 rrp4; exosome complex RNA-binding protein Rrp4 K03679 RRP4; exosome complex component RRP4
E mru_0168 csl4; exosome complex RNA-binding protein Csl4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E mru_1353 rrp41; exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41
E mru_1352 rrp42; exosome complex RNA-binding protein Rrp42 K12589 RRP42; exosome complex component RRP42
D Others
E mru_1319 DEAD/DEAH box helicase domain-containing protein K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024