+E Transcription factors KO
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Transcription Factors - Marinobacterium rhizophilum
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D KDW95_12255 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D KDW95_04705 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D KDW95_16915 GlxA family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D KDW95_13000 GlxA family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D KDW95_13195 GlxA family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D KDW95_16945 GlxA family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D KDW95_08785 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_19990 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_21950 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_02710 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_05355 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_04250 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_20855 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_20955 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D KDW95_03125 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D KDW95_12435 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D KDW95_10045 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D KDW95_09690 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D KDW95_15735 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D KDW95_21665 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D KDW95_07830 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D KDW95_00470 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D KDW95_03705 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D KDW95_12535 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D KDW95_02290 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D KDW95_13870 LysR family transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D KDW95_07445 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D KDW95_05195 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D KDW95_04260 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D KDW95_14650 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D KDW95_09490 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D KDW95_20690 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D KDW95_03285 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D KDW95_10450 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D KDW95_19900 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D KDW95_14060 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D KDW95_03915 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D KDW95_04990 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D KDW95_11045 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D KDW95_15340 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D KDW95_06145 FCD domain-containing protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D KDW95_19215 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D KDW95_21810 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D KDW95_00640 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D KDW95_01000 csiR; DNA-binding transcriptional regulator CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D KDW95_15265 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D KDW95_17575 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D KDW95_13490 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D KDW95_15700 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D KDW95_18645 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D KDW95_09910 TetR family transcriptional regulator C-terminal domain-containing protein K09017 rutR; TetR/AcrR family transcriptional regulator
D KDW95_12830 TetR family transcriptional regulator C-terminal domain-containing protein K09017 rutR; TetR/AcrR family transcriptional regulator
D KDW95_17610 TetR family transcriptional regulator C-terminal domain-containing protein K09017 rutR; TetR/AcrR family transcriptional regulator
D KDW95_02250 TetR family transcriptional regulator C-terminal domain-containing protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D KDW95_06180 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D KDW95_02390 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
C Lrp/AsnC family
D KDW95_13250 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D KDW95_16255 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D KDW95_18730 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D KDW95_01860 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D KDW95_02715 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
D KDW95_05045 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D KDW95_17090 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D KDW95_13940 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D KDW95_15820 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D KDW95_06115 helix-turn-helix domain-containing protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D KDW95_05415 helix-turn-helix domain-containing protein K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D KDW95_02520 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D KDW95_06610 fnr; fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D KDW95_21440 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D KDW95_07720 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D KDW95_09365 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D KDW95_16645 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D KDW95_16285 SIS domain-containing protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D KDW95_04035 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D KDW95_17310 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D KDW95_21740 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D KDW95_04335 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D KDW95_12020 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D KDW95_09480 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D KDW95_03515 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D KDW95_04945 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D KDW95_08800 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D KDW95_14325 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D KDW95_08175 BolA/IbaG family iron-sulfur metabolism protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D KDW95_16090 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D KDW95_11765 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D KDW95_18880 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D KDW95_18885 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D KDW95_00235 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D KDW95_00220 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C
D KDW95_14795 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D KDW95_22565 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D KDW95_01590 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D KDW95_14785 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D KDW95_16700 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D KDW95_08930 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D KDW95_14280 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D KDW95_10900 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0