+E Transcription factors KO
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Transcription Factors - Micromonospora sagamiensis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D GCM10017556_37580 restriction endonuclease subunit M K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GCM10017556_23610 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GCM10017556_23920 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D GCM10017556_27820 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D GCM10017556_16290 DNA-3-methyladenine glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GCM10017556_38070 ftrA; transcriptional activator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D GCM10017556_33720 putative transcriptional regulator, LysR family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D GCM10017556_20360 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D GCM10017556_04100 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_53180 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_56730 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_57360 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_57830 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_57910 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GCM10017556_13150 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D GCM10017556_53520 transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D GCM10017556_45200 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_47880 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_49060 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_51530 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_51820 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_18070 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_27780 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D GCM10017556_27790 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GCM10017556_56880 hypothetical protein K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D GCM10017556_51300 hypothetical protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D GCM10017556_51160 TetR family transcriptional regulator K18937 lfrR; TetR/AcrR family transcriptional regulator, repressor for lfrA
D GCM10017556_05090 TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
C Lrp/AsnC family
D GCM10017556_10280 asnC; AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D GCM10017556_29220 lrp; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GCM10017556_12310 lrp; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GCM10017556_54680 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D GCM10017556_09670 transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D GCM10017556_06710 putative transcriptional regulator, MarR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D GCM10017556_24770 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D GCM10017556_27310 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D GCM10017556_07770 MerR family transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D GCM10017556_36390 tipA; HTH-type transcriptional activator TipA K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D GCM10017556_13230 cobalamin-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D GCM10017556_28220 transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D GCM10017556_10800 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GCM10017556_49460 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GCM10017556_19560 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GCM10017556_32490 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D GCM10017556_01580 fur; transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D GCM10017556_53360 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D GCM10017556_07580 cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GCM10017556_10110 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GCM10017556_21540 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D GCM10017556_43360 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D GCM10017556_04070 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GCM10017556_27500 putative transcriptional regulator, ArsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GCM10017556_28160 arsR; transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GCM10017556_28190 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D GCM10017556_10790 hypothetical protein K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D GCM10017556_58610 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D GCM10017556_40660 transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D GCM10017556_03120 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GCM10017556_33360 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GCM10017556_34540 padR; PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GCM10017556_37880 hypothetical protein K10947 K10947; PadR family transcriptional regulator
D GCM10017556_45370 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GCM10017556_46130 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GCM10017556_18960 hypothetical protein K10947 K10947; PadR family transcriptional regulator
D GCM10017556_19180 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D GCM10017556_41200 iron-dependent repressor IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D GCM10017556_04420 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D GCM10017556_33900 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GCM10017556_19020 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D GCM10017556_27860 XRE family transcriptional regulator K27097 espR; ESX-1-secreted protein regulator
D GCM10017556_45260 hypothetical protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D GCM10017556_35240 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_14960 whiB; transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_15120 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_16790 whiD; transcriptional regulator WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_21740 whiB; transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_15380 whiB; transcriptional regulator WhiB K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D GCM10017556_31240 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GCM10017556_04330 pucR; CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D GCM10017556_26070 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GCM10017556_20860 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D GCM10017556_47300 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D GCM10017556_11120 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D GCM10017556_20980 amino acid-binding protein K03567 gcvR; glycine cleavage system transcriptional repressor
D GCM10017556_32010 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D GCM10017556_50980 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D GCM10017556_16710 hypothetical protein K03973 pspC; phage shock protein C
D GCM10017556_46850 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GCM10017556_29120 hypothetical protein K07733 alpA; prophage regulatory protein
D GCM10017556_50900 hypothetical protein K07733 alpA; prophage regulatory protein
D GCM10017556_22290 hypothetical protein K07733 alpA; prophage regulatory protein
D GCM10017556_35760 UPF0301 protein K07735 algH; putative transcriptional regulator
D GCM10017556_06850 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D GCM10017556_48790 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D GCM10017556_50270 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D GCM10017556_41150 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D GCM10017556_07040 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0