+F Repair protein KO #

  DNA Repair and Recombination Proteins - Myxococcus stipitatus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MYSTI_02141 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MYSTI_02336 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MYSTI_03816 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MYSTI_00736 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MYSTI_07072 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MYSTI_02263 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MYSTI_01451 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MYSTI_07027 base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MYSTI_03643 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MYSTI_02959 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_03970 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_04846 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_07822 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_04170 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_02371 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MYSTI_02141 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MYSTI_02336 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MYSTI_06515 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D MYSTI_03816 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MYSTI_00736 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MYSTI_02760 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E MYSTI_04362 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MYSTI_04882 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MYSTI_01676 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MYSTI_02337 putative ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MYSTI_02140 putative ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MYSTI_07072 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MYSTI_02263 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MYSTI_06550 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MYSTI_01451 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MYSTI_07027 base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MYSTI_03643 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MYSTI_01700 nuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MYSTI_05675 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MYSTI_03946 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MYSTI_01632 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] E MYSTI_07646 hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E MYSTI_05143 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MYSTI_06230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MYSTI_03580 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MYSTI_06033 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E MYSTI_02998 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MYSTI_02779 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E MYSTI_03024 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MYSTI_03025 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MYSTI_06739 GIY-YIG catalytic domain-containing protein K03703 uvrC; excinuclease ABC subunit C E MYSTI_01644 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_02280 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_04501 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_04334 ATP-dependent DNA helicase RecQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_06054 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_03580 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E MYSTI_06230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MYSTI_03539 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MYSTI_03540 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MYSTI_04610 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MYSTI_05379 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MYSTI_01066 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MYSTI_03997 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MYSTI_03762 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MYSTI_03898 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MYSTI_05097 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MYSTI_05096 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MYSTI_06448 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MYSTI_00240 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MYSTI_03223 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MYSTI_03222 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MYSTI_02222 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MYSTI_06230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MYSTI_01644 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_02280 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_04501 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_04334 ATP-dependent DNA helicase RecQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_06054 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MYSTI_01113 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E MYSTI_04339 very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] E MYSTI_05952 very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MYSTI_01406 recA protein K03553 recA; recombination protein RecA E MYSTI_01461 recA protein K03553 recA; recombination protein RecA E MYSTI_03923 RecA protein K03553 recA; recombination protein RecA E MYSTI_05465 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MYSTI_05462 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MYSTI_05466 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MYSTI_01448 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MYSTI_01008 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E MYSTI_01007 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MYSTI_01406 recA protein K03553 recA; recombination protein RecA E MYSTI_01461 recA protein K03553 recA; recombination protein RecA E MYSTI_03923 RecA protein K03553 recA; recombination protein RecA E MYSTI_01278 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MYSTI_00244 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E MYSTI_04523 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MYSTI_05143 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MYSTI_03548 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E MYSTI_02219 recombination protein RecR K06187 recR; recombination protein RecR E MYSTI_05914 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MYSTI_03613 hypothetical protein K03554 rdgC; recombination associated protein RdgC E MYSTI_05465 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MYSTI_05462 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MYSTI_05466 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E MYSTI_07925 CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 E MYSTI_07612 CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E MYSTI_01008 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E MYSTI_01007 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MYSTI_06551 Ku protein K10979 ku; DNA end-binding protein Ku E MYSTI_01057 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MYSTI_00741 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MYSTI_02870 type II DNA topoisomerase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MYSTI_00261 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MYSTI_07690 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MYSTI_07691 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MYSTI_02869 type II DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MYSTI_03461 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MYSTI_01454 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MYSTI_05143 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MYSTI_03548 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F MYSTI_02219 recombination protein RecR K06187 recR; recombination protein RecR F MYSTI_06230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F MYSTI_04355 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F MYSTI_06235 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta F MYSTI_04472 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F MYSTI_02242 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MYSTI_06033 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F MYSTI_02998 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MYSTI_02779 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F MYSTI_03024 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MYSTI_02932 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MYSTI_01406 recA protein K03553 recA; recombination protein RecA D MYSTI_01461 recA protein K03553 recA; recombination protein RecA D MYSTI_03923 RecA protein K03553 recA; recombination protein RecA D MYSTI_04932 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D MYSTI_05914 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MYSTI_03924 hypothetical protein K14161 imuB; protein ImuB D MYSTI_03933 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MYSTI_01113 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D MYSTI_02285 regulatory protein RecX K03565 recX; regulatory protein D MYSTI_07222 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D MYSTI_03192 DNA polymerase IV K02347 polX; DNA polymerase (family X) D MYSTI_06621 DNA polymerase domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D MYSTI_06388 exonuclease K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MYSTI_07329 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MYSTI_01047 putative ATP_dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MYSTI_02959 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_03970 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_04846 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_07822 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_04170 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MYSTI_02371 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MYSTI_05549 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MYSTI_03397 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MYSTI_05550 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024