+E Transcription factors KO
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Transcription Factors - Mycobacterium shinjukuense
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D MSHI_05410 alkA; putative bifunctional transcriptional activator/DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
C DeoR family
C LacI family
C GntR family
D MSHI_29440 putative HTH-type transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D MSHI_34540 ethR; HTH-type transcriptional regulator EthR K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MSHI_17350 TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D MSHI_38480 kstR; HTH-type transcriptional repressor KstR K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MSHI_38810 kstR2; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MSHI_27540 TetR family transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D MSHI_09180 mce3R; transcriptional repressor Mce3R K27107 mce3R; TetR/AcrR family transcriptional regulator, mce3 operon repressor
D MSHI_26400 HTH-type transcriptional repressor K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase
C Lrp/AsnC family
D MSHI_25390 lrpA; transcriptional regulator LrpA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
D MSHI_12280 hypothetical protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MSHI_31230 hspR; MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D MSHI_08460 furB; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MSHI_12810 furA; transcriptional regulator FurA K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D MSHI_14210 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D MSHI_37540 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D MSHI_15260 transcriptional regulator K21884 cmr; CRP/FNR family transcriptional regulator, cAMP and macrophage regulator
C Rrf2 family
C ArsR family
D MSHI_20120 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MSHI_20100 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MSHI_12370 cmtR; HTH-type transcriptional regulator CmtR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D MSHI_36810 transcriptional regulator K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor
D MSHI_08470 smtB; HTH-type transcriptional repressor SmtB K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D MSHI_03380 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D MSHI_29720 ramB; HTH-type transcriptional regulator RamB K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D MSHI_20970 clgR; transcriptional regulator ClgR K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D MSHI_20650 ideR; iron-dependent repressor IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D MSHI_13510 blaI; transcriptional regulator BlaI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D MSHI_25110 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MSHI_34480 nucleoid-associated protein K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D MSHI_24490 whiB1; transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_24880 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_26500 whiB3; redox-responsive transcriptional regulator WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_37480 whiB4; transcriptional regulator WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_35530 whiB5; transcriptional regulator WhiB K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_34630 whiB6; putative transcriptional regulator WhiB6 K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_24190 whiB7; putative transcriptional regulator WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MSHI_28680 csoR; copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MSHI_32070 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MSHI_04750 embR; transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MSHI_35230 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MSHI_38400 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MSHI_15490 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D MSHI_08340 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D MSHI_39750 aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D MSHI_27680 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MSHI_36210 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MSHI_18540 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D MSHI_35710 UPF0301 protein K07735 algH; putative transcriptional regulator
D MSHI_20720 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D MSHI_11050 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0