+E Transcription factors KO #

  Transcription Factors - Mycobacterium shinjukuense

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D MSHI_05410 alkA; putative bifunctional transcriptional activator/DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family C DeoR family C LacI family C GntR family D MSHI_29440 putative HTH-type transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D MSHI_34540 ethR; HTH-type transcriptional regulator EthR K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator D MSHI_17350 TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D MSHI_38480 kstR; HTH-type transcriptional repressor KstR K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MSHI_38810 kstR2; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MSHI_27540 TetR family transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system D MSHI_09180 mce3R; transcriptional repressor Mce3R K27107 mce3R; TetR/AcrR family transcriptional regulator, mce3 operon repressor D MSHI_26400 HTH-type transcriptional repressor K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase C Lrp/AsnC family D MSHI_25390 lrpA; transcriptional regulator LrpA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D MSHI_12280 hypothetical protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D MSHI_31230 hspR; MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR C Fur family D MSHI_08460 furB; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D MSHI_12810 furA; transcriptional regulator FurA K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family D MSHI_14210 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D MSHI_37540 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSHI_15260 transcriptional regulator K21884 cmr; CRP/FNR family transcriptional regulator, cAMP and macrophage regulator C Rrf2 family C ArsR family D MSHI_20120 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MSHI_20100 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MSHI_12370 cmtR; HTH-type transcriptional regulator CmtR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D MSHI_36810 transcriptional regulator K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor D MSHI_08470 smtB; HTH-type transcriptional repressor SmtB K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D MSHI_03380 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D MSHI_29720 ramB; HTH-type transcriptional regulator RamB K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D MSHI_20970 clgR; transcriptional regulator ClgR K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family C Other families D MSHI_20650 ideR; iron-dependent repressor IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D MSHI_13510 blaI; transcriptional regulator BlaI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D MSHI_25110 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D MSHI_34480 nucleoid-associated protein K27097 espR; ESX-1-secreted protein regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D MSHI_24490 whiB1; transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_24880 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_26500 whiB3; redox-responsive transcriptional regulator WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_37480 whiB4; transcriptional regulator WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_35530 whiB5; transcriptional regulator WhiB K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_34630 whiB6; putative transcriptional regulator WhiB6 K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_24190 whiB7; putative transcriptional regulator WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MSHI_28680 csoR; copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MSHI_32070 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MSHI_04750 embR; transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D MSHI_35230 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MSHI_38400 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D MSHI_15490 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D MSHI_08340 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D MSHI_39750 aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D MSHI_27680 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D MSHI_36210 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D MSHI_18540 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D MSHI_35710 UPF0301 protein K07735 algH; putative transcriptional regulator D MSHI_20720 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D MSHI_11050 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0