+F Repair protein KO
#
DNA Repair and Recombination Proteins - Magnolia sinica
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 131255427 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 131219330 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 131232268 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 131236886 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 131227429 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 131246024 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 131223927 uncharacterized protein LOC131223927 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 131242684 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 131255480 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 131240106 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 131237296 DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X1 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 131220055 uncharacterized protein LOC131220055 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131236564 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131250550 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131238614 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131238942 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131224047 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131224137 uncharacterized protein LOC131224137 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131253841 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131254167 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131255250 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131228647 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131244379 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131244526 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131244619 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131217362 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131217609 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131247222 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 131243128 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
F 131240959 uncharacterized protein LOC131240959 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 131233928 uncharacterized protein LOC131233928 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 131216875 DNA polymerase epsilon catalytic subunit A-like isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 131227652 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 131235146 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 131252659 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 131239920 uncharacterized protein LOC131239920 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
E 131256550 uncharacterized protein LOC131256550 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
E 131231293 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 131243926 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 131225110 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 131228527 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 131223338 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 131239133 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 131223632 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 131245116 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 131258310 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 131230293 poly [ADP-ribose] polymerase 1 isoform X1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 131225389 poly [ADP-ribose] polymerase 2 isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 131226725 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 131251308 ubiquitin receptor RAD23c-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 131256890 ubiquitin receptor RAD23b-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 131251730 RING-box protein 1a isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 131227046 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 131242564 cullin-4-like K10609 CUL4; cullin 4
F 131242654 cullin-4-like K10609 CUL4; cullin 4
F 131220759 DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 131244006 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 131226651 uncharacterized protein LOC131226651 K15082 RAD7; DNA repair protein RAD7
F 131242682 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 131248865 DNA-directed RNA polymerase II subunit RPB1-like isoform X1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 131248872 DNA-directed RNA polymerase II subunit RPB1 isoform X1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 131245245 DNA-directed RNA polymerase II subunit RPB2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 131217267 DNA-directed RNA polymerase II subunit RPB2 isoform X1 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 131228541 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 131224642 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 131243026 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 131249080 DNA-directed RNA polymerase V subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 131250999 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 131226773 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 131226774 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 131239424 uncharacterized protein LOC131239424 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 131240909 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 131232865 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 131243839 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 131218696 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 131231022 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 131231350 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 131256119 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 131243722 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 131232702 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 131245637 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 131222569 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 131219513 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 131242891 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 131251730 RING-box protein 1a isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 131227046 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 131242564 cullin-4-like K10609 CUL4; cullin 4
F 131242654 cullin-4-like K10609 CUL4; cullin 4
F 131220759 DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 131235555 WD repeat-containing protein ATCSA-1-like K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 131236347 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 131240406 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 131241196 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 131240931 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 131245487 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 131232495 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 131221353 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 131257866 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 131230307 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 131236449 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 131231571 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 131248406 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 131226066 cyclin-dependent kinase D-1-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 131235600 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 131241149 uncharacterized protein LOC131241149 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 131244311 uncharacterized protein LOC131244311 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 131219375 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 131226688 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 131247924 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 131256729 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 131217182 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 131225959 replication protein A 14 kDa subunit-like K10740 RPA3; replication factor A3
D Other NER factors
E 131232494 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 131232489 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 131258223 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 131228527 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 131222929 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 131242124 cullin-3A-like K03869 CUL3; cullin 3
E 131252740 uncharacterized protein LOC131252740 K03872 ELOC; elongin-C
E 131217045 uncharacterized protein LOC131217045 isoform X1 K03873 ELOB; elongin-B
E 131242119 uncharacterized protein LOC131242119 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 131237554 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 131231928 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 131254134 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
E 131231180 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 131236769 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 131231927 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 131243333 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 131220055 uncharacterized protein LOC131220055 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131236564 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131250550 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131238614 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131238942 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131224047 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131224137 uncharacterized protein LOC131224137 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131253841 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131254167 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131255250 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131228647 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131244379 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131244526 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131244619 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131217362 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131217609 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131247222 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 131243128 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
E 131240959 uncharacterized protein LOC131240959 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 131233928 uncharacterized protein LOC131233928 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 131219375 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 131226688 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 131247924 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 131256729 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 131217182 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 131225959 replication protein A 14 kDa subunit-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 131226610 replication factor C subunit 1-like K10754 RFC1; replication factor C subunit 1
E 131232623 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 131248531 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 131242672 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
E 131248039 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 131237952 uncharacterized protein LOC131237952 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
E 131237953 uncharacterized protein LOC131237953 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
E 131242693 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 131232934 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
E 131218282 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 131252659 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 131239920 uncharacterized protein LOC131239920 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
E 131256550 uncharacterized protein LOC131256550 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
E 131231293 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 131243926 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 131221203 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 131246456 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 131228527 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 131216929 uncharacterized protein LOC131216929 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 131258219 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 131239599 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 131236829 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 131243392 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 131245804 BRCA1-associated RING domain protein 1-like isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 131217425 uncharacterized protein LOC131217425 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 131243491 uncharacterized protein LOC131243491 isoform X1 K12173 BRE; BRCA1-A complex subunit BRE
E 131255938 uncharacterized protein LOC131255938 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 131243331 uncharacterized protein LOC131243331 isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 131242662 uncharacterized protein LOC131242662 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 131258219 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 131239599 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 131236829 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA complex
E 131236303 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 131223922 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 131251771 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 131251771 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 131253199 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 131248369 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 131253019 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 131237495 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 131256750 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 131242730 DNA repair RAD52-like protein 1, mitochondrial isoform X1 K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 131246461 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 131248097 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 131249349 protein CHROMATIN REMODELING 35-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 131249808 LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 131242474 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 131232347 SNF2 domain-containing protein CLASSY 2-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 131225292 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 131233868 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 131231959 ATP-dependent DNA helicase Q-like SIM isoform X1 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 131235615 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131227099 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131239956 ATP-dependent DNA helicase Q-like 5 isoform X1 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 131235615 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131227099 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131239300 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 131239665 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 131239439 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 131223560 uncharacterized protein LOC131223560 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 131219375 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 131226688 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 131247924 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 131256729 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 131217182 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 131225959 replication protein A 14 kDa subunit-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 131228761 serine/threonine-protein phosphatase PP-X isozyme 2 isoform X1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 131245486 uncharacterized protein LOC131245486 isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 131224775 uncharacterized protein LOC131224775 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 131236870 uncharacterized protein LOC131236870 K19022 AP5B1; AP-5 complex subunit beta-1
E 131231848 AP-5 complex subunit mu isoform X1 K19023 AP5M1; AP-5 complex subunit mu-1
E 131221378 uncharacterized protein LOC131221378 isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 131248881 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 131248275 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 131251088 uncharacterized protein LOC131251088 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 131240701 E3 SUMO-protein ligase MMS21 isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 131219597 non-structural maintenance of chromosomes element 4 homolog A isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 131222391 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 131222392 non-structural maintenance of chromosomes element 4 homolog A-like isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 131229064 crossover junction endonuclease EME1B isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 131234810 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 131257950 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 131248884 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 131253567 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 131248482 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 131226317 single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 131254340 uncharacterized protein LOC131254340 isoform X1 K19026 SPG11; spatacsin
E 131223756 uncharacterized protein LOC131223756 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 131229282 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 131235689 uncharacterized protein LOC131235689 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 131239516 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 131228941 uncharacterized protein LOC131228941 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 131251297 uncharacterized protein LOC131251297 isoform X1 K27803 HROB; homologous recombination OB-fold protein
E 131253246 probable DNA helicase MCM8 isoform X1 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 131234449 probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 131240684 3'-5' exonuclease-like isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 131217138 DNA-dependent metalloprotease WSS1-like isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 131223636 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 131242738 single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 K26561 WHY2; single-stranded DNA-binding protein WHY2
E 131244076 single-stranded DNA-binding protein WHY2, mitochondrial-like K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 131239739 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 131248400 ATP-dependent DNA helicase 2 subunit KU80 isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 131258219 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 131239599 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 131217283 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 131227422 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 131258310 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 131223632 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 131221211 uncharacterized protein LOC131221211 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 131245200 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 131218820 uncharacterized protein LOC131218820 isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 131235293 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 131239306 protein MHF1 homolog K11511 APITD1; centromere protein S
E 131246160 protein MHF2 homolog isoform X1 K15360 STRA13; centromere protein X
E 131223105 probable ubiquitin-conjugating enzyme E2 37 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 131235615 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131227099 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 131239300 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 131239665 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 131239439 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 131223560 uncharacterized protein LOC131223560 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 131242659 uncharacterized protein LOC131242659 isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 131231163 uncharacterized protein LOC131231163 isoform X1 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 131236303 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 131223922 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 131243331 uncharacterized protein LOC131243331 isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 131246425 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 131251771 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 131248369 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 131246227 uncharacterized protein LOC131246227 K11137 TELO2; telomere length regulation protein
E 131225526 uncharacterized protein LOC131225526 K15361 WDR48; WD repeat-containing protein 48
E 131231411 uncharacterized protein LOC131231411 isoform X1 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 131236798 phytochrome-associated serine/threonine-protein phosphatase-like K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 131242873 phytochrome-associated serine/threonine-protein phosphatase isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 131220763 uncharacterized protein LOC131220763 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 131243790 uncharacterized protein LOC131243790 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 131245949 uncharacterized protein LOC131245949 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 131257018 uncharacterized protein LOC131257018 isoform X1 K23314 WRAP53; telomerase Cajal body protein 1
E 131245743 uncharacterized protein LOC131245743 K24752 WDR70; WD repeat-containing protein 70
E 131216929 uncharacterized protein LOC131216929 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 131221102 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 131218950 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 131219087 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 131231593 DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 131218816 ubiquitin-conjugating enzyme E2 1-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131235197 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131249208 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131223470 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131253664 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131243501 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131232924 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 131235703 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 131226245 DNA repair protein RAD5B isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 131251002 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 isoform X1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 131236113 ubiquitin-conjugating enzyme E2 variant 1D-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131248722 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131251545 ubiquitin-conjugating enzyme E2 variant 1D-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131252191 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131227990 ubiquitin-conjugating enzyme spm2-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131234343 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 131241020 ubiquitin-conjugating enzyme E2 36 isoform X1 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 131245377 ubiquitin-conjugating enzyme E2 36-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 131252659 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 131239920 uncharacterized protein LOC131239920 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
D 131256550 uncharacterized protein LOC131256550 isoform X1 K04802 PCNA; proliferating cell nuclear antigen
D 131231293 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 131243926 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 131230981 uncharacterized protein LOC131230981 isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 131242848 checkpoint protein hus1 K10903 HUS1; HUS1 checkpoint protein
D 131248607 uncharacterized protein LOC131248607 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 131243524 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 131248531 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 131242672 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
D 131248039 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 131237952 uncharacterized protein LOC131237952 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D 131237953 uncharacterized protein LOC131237953 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D 131242693 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 131232934 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D 131218282 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 131248607 uncharacterized protein LOC131248607 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 131245111 uncharacterized protein LOC131245111 isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 131236903 uncharacterized protein LOC131236903 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 131246227 uncharacterized protein LOC131246227 K11137 TELO2; telomere length regulation protein
D 131250207 uncharacterized protein LOC131250207 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 131256722 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 131254311 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 131221335 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 131237824 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 131219321 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 131238735 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 131251315 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 131229191 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 131241013 14-3-3-like protein B isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 131242336 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 131242411 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 131245378 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 131233784 14-3-3 protein 7 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 131234340 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 131234980 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 131234370 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 131225506 uncharacterized protein LOC131225506 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 131230327 uncharacterized protein LOC131230327 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 131235403 serine/threonine-protein kinase Nek5 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 131220942 serine/threonine-protein kinase Nek6 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 131249370 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 131246351 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 131249153 uncharacterized protein LOC131249153 K22422 DONSON; protein downstream neighbor of Son
D 131252993 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 131243623 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 131245149 uncharacterized protein LOC131245149 K25059 SDE2; replication stress response regulator SDE2
D 131237423 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 131223099 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 131218757 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 131233321 uncharacterized protein LOC131233321 isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 131227689 uncharacterized protein LOC131227689 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 131242613 uncharacterized protein LOC131242613 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 131242614 uncharacterized protein LOC131242614 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 131246525 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 131237218 uncharacterized protein LOC131237218 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 131238967 uncharacterized protein LOC131238967 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 131217679 uncharacterized protein LOC131217679 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 131237640 endonuclease 2-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 131227770 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 131232690 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 131232752 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 131234724 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 131241310 switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 131245781 pre-mRNA-processing factor 19-like isoform X1 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 131242859 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 131251121 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 131218898 protein pleiotropic regulatory locus 1-like isoform X1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 131237768 nudix hydrolase 1 isoform X1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 131228715 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 131218224 deoxyuridine 5'-triphosphate nucleotidohydrolase-like isoform X1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 131236137 ribonucleoside-diphosphate reductase large subunit-like isoform X1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 131225021 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 131242469 ribonucleoside-diphosphate reductase large subunit isoform X1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 131239492 ribonucleoside-diphosphate reductase small chain-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 131226126 ribonucleoside-diphosphate reductase small chain A isoform X1 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 131246786 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 131232268 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 131236886 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 131234461 DNA-3-methyladenine glycosylase-like isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 131227429 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 131246024 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 131221182 uncharacterized protein LOC131221182 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131257381 uncharacterized protein LOC131257381 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131258115 uncharacterized protein LOC131258115 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131258116 uncharacterized protein LOC131258116 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131216999 uncharacterized protein LOC131216999 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131218536 uncharacterized protein LOC131218536 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 131258369 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 131255480 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 131240106 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 131228028 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 131239698 DNA polymerase I B, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 131239698 DNA polymerase I B, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 131258385 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 18128568 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 131258386 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 131258389 DNA-directed RNA polymerase subunit beta'' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 18128566 rpoC2; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 18128567 rpoC1; RNA polymerase beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 18128624 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 131230630 uncharacterized protein LOC131230630 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 131235092 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 131220803 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
E 131239255 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 131220803 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
E 131239255 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 131237572 uncharacterized protein LOC131237572 K04485 radA; DNA repair protein RadA/Sms
E 131237782 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 131227955 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 131228594 DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 131253707 uncharacterized protein LOC131253707 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 131220803 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
D 131239255 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 131235092 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 131237768 nudix hydrolase 1 isoform X1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 131228715 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 131218224 deoxyuridine 5'-triphosphate nucleotidohydrolase-like isoform X1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024