+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycobacterium tuberculosis CCDC5180

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CCDC5180_1209 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CCDC5180_2697 ung, uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CCDC5180_1549 3-methyladenine DNA glycosylase mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CCDC5180_3282 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CCDC5180_3354 ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CCDC5180_0789 DNA helicase ercc3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CCDC5180_1065 mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_0382 mutator protein mutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_1458 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_2450 deoxyuridine 5-triphosphate nucleotidohydrolase dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CCDC5180_1209 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CCDC5180_2697 ung, uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CCDC5180_1155 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CCDC5180_1210 bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CCDC5180_1549 3-methyladenine DNA glycosylase mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CCDC5180_3282 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CCDC5180_1111 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CCDC5180_0863 hypothetical formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CCDC5180_2649 formamidopyrimidine-DNA glycosylase fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CCDC5180_3006 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E CCDC5180_2245 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E CCDC5180_3354 ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CCDC5180_0394 exodeoxyribonuclease III protein xthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CCDC5180_0613 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E CCDC5180_2733 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CCDC5180_1494 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CCDC5180_1503 excinuclease ABC subunit A uvrA K03701 uvrA; excinuclease ABC subunit A E CCDC5180_1498 excinuclease ABC subunit B uvrB K03702 uvrB; excinuclease ABC subunit B E CCDC5180_1308 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CCDC5180_0866 ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_2912 ATP-dependent DNA helicase II uvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_2915 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_1494 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CCDC5180_2733 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CCDC5180_0610 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CCDC5180_0611 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CCDC5180_3156 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CCDC5180_1279 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CCDC5180_0935 transcription-repair coupling factor mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E CCDC5180_1015 exodeoxyribonuclease VII (large subunit) xseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CCDC5180_1430 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CCDC5180_0004 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CCDC5180_2201 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CCDC5180_3329 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CCDC5180_3394 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CCDC5180_2000 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CCDC5180_3404 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CCDC5180_2733 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CCDC5180_0866 ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_2912 ATP-dependent DNA helicase II uvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_2915 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCDC5180_0051 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CCDC5180_2258 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CCDC5180_0580 exonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E CCDC5180_0581 exonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E CCDC5180_0579 exonuclease V alpha subunit recD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CCDC5180_2482 recA protein (recombinase A) K03553 recA; recombination protein RecA E CCDC5180_2362 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E CCDC5180_2361 holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CCDC5180_2363 Holliday junction resolvase ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CCDC5180_1290 primosomal protein N priA (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E CCDC5180_2482 recA protein (recombinase A) K03553 recA; recombination protein RecA E CCDC5180_3278 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CCDC5180_0005 recombination protein F K03629 recF; DNA replication and repair protein RecF E CCDC5180_2695 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CCDC5180_2156 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E CCDC5180_3398 recombination protein RecR K06187 recR; recombination protein RecR E CCDC5180_1556 DNA repair protein recN (recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E CCDC5180_2362 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E CCDC5180_2361 holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CCDC5180_2363 Holliday junction resolvase ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E CCDC5180_2286 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E CCDC5180_0857 hypothetical protein K10979 ku; DNA end-binding protein Ku E CCDC5180_0858 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CCDC5180_0008 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CCDC5180_0007 DNA gyrase subunit B gyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CCDC5180_3331 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CCDC5180_2707 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CCDC5180_2156 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F CCDC5180_3398 recombination protein RecR K06187 recR; recombination protein RecR F CCDC5180_2733 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CCDC5180_1503 excinuclease ABC subunit A uvrA K03701 uvrA; excinuclease ABC subunit A F CCDC5180_1498 excinuclease ABC subunit B uvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CCDC5180_1421 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CCDC5180_2777 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CCDC5180_2482 recA protein (recombinase A) K03553 recA; recombination protein RecA D CCDC5180_2467 repressor lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CCDC5180_1556 DNA repair protein recN (recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D CCDC5180_3092 hypothetical protein K14161 imuB; protein ImuB D CCDC5180_3072 DNA polymerase subunit III alpha dnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CCDC5180_0051 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CCDC5180_2258 hypothetical protein K03111 ssb; single-strand DNA-binding protein D CCDC5180_2481 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CCDC5180_1223 ATP-dependent helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CCDC5180_3005 ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CCDC5180_1065 mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_0382 mutator protein mutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_1458 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCDC5180_2706 hydrolase MutT1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D CCDC5180_1560 hypothetical protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D CCDC5180_2450 deoxyuridine 5-triphosphate nucleotidohydrolase dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CCDC5180_2773 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CCDC5180_0527 ribonucleoside-diphosphate reductase large subunit NrdZ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CCDC5180_2770 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CCDC5180_0216 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CCDC5180_1805 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D CCDC5180_2566 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024