+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycobacterium tuberculosis Haarlem

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TBHG_01301 methylated-DNA-protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TBHG_02906 uracil DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TBHG_01647 3-methyladenine DNA glycosylase Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TBHG_03530 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TBHG_03609 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TBHG_00849 DNA helicase Ercc3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TBHG_00409 mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_01144 mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_01554 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_02633 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TBHG_01301 methylated-DNA-protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TBHG_02906 uracil DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TBHG_01243 uracil DNA glycosylase UdgB K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TBHG_01302 bifunctional regulatory protein and DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TBHG_01647 3-methyladenine DNA glycosylase Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TBHG_03530 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TBHG_01193 DNA-3-methyladenine glycosylase I TagA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E TBHG_02853 formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TBHG_00928 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TBHG_03233 endonuclease VIII Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E TBHG_02404 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E TBHG_03609 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TBHG_00423 exodeoxyribonuclease III protein XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TBHG_00665 endonuclease IV End K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E TBHG_02946 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TBHG_01590 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TBHG_01599 excinuclease ABC UvrA K03701 uvrA; excinuclease ABC subunit A E TBHG_01594 excinuclease ABC UvrB K03702 uvrB; excinuclease ABC subunit B E TBHG_01399 excinuclease ABC UvrC K03703 uvrC; excinuclease ABC subunit C E TBHG_03128 ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_03132 DNA helicase II/ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_00933 ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_01590 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E TBHG_02946 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TBHG_00662 DNA-directed RNA polymerase RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TBHG_00663 DNA-directed RNA polymerase RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TBHG_03389 DNA-directed RNA polymerase alpha chain RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TBHG_01370 DNA-directed RNA polymerase omega chain RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TBHG_01004 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E TBHG_01093 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TBHG_01092 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TBHG_01527 DNA polymerase III alpha subunit DnaE1 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TBHG_00002 DNA polymerase III DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TBHG_02352 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TBHG_03580 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TBHG_03647 DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TBHG_02143 exonuclease, DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TBHG_03657 DNA polymerase III DnaZ/X K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TBHG_02946 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TBHG_03128 ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_03132 DNA helicase II/ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_00933 ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TBHG_00054 single-strand DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein E TBHG_02418 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TBHG_00625 exonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E TBHG_00626 exonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E TBHG_00624 exonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TBHG_02669 protein RecA K03553 recA; recombination protein RecA E TBHG_02530 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TBHG_02529 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TBHG_02531 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TBHG_03984 primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E TBHG_02669 protein RecA K03553 recA; recombination protein RecA E TBHG_03526 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TBHG_00003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E TBHG_02903 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TBHG_02301 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TBHG_03651 recombination protein RecR K06187 recR; recombination protein RecR E TBHG_01654 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TBHG_02530 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TBHG_02529 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TBHG_02531 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E TBHG_02748 CRISPR-associated endonuclease cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TBHG_02447 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E TBHG_00922 DNA end-binding protein Mku K10979 ku; DNA end-binding protein Ku E TBHG_00923 ATP dependent DNA ligase LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TBHG_00006 DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TBHG_00005 DNA gyrase subunit A GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TBHG_03582 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TBHG_02916 DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TBHG_02301 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TBHG_03651 recombination protein RecR K06187 recR; recombination protein RecR F TBHG_02946 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F TBHG_01599 excinuclease ABC UvrA K03701 uvrA; excinuclease ABC subunit A F TBHG_01594 excinuclease ABC UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TBHG_02986 DNA-damage-inducible protein F DinF K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TBHG_01518 DNA polymerase IV DinX K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TBHG_02669 protein RecA K03553 recA; recombination protein RecA D TBHG_02654 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D TBHG_01654 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TBHG_03330 hypothetical protein K14161 imuB; protein ImuB D TBHG_03308 DNA polymerase III alpha subunit DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TBHG_00054 single-strand DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TBHG_02418 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TBHG_02668 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TBHG_01316 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D TBHG_00409 mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_01144 mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_01554 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TBHG_02915 hydrolase MutT1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D TBHG_01658 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D TBHG_02633 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TBHG_03897 ribonucleoside-diphosphate reductase NrdZ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TBHG_02980 ribonucleoside-diphosphate reductase NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TBHG_02977 ribonucleoside-diphosphate reductase NrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TBHG_00233 ribonucleoside-diphosphate reductase NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TBHG_01937 ribonucleoside-diphosphate reductase NrdF1 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D TBHG_02767 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024