+E Ribosome biogenesis KO
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Ribosome Biogenesis - Methylocella tundrae
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D MTUNDRAET4_1396 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C MTUNDRAET4_1395 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
C MTUNDRAET4_2059 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C MTUNDRAET4_1770 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
C MTUNDRAET4_2604 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
C MTUNDRAET4_1371 nusB; Transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C MTUNDRAET4_4217 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D MTUNDRAET4_3833 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D MTUNDRAET4_3848 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D MTUNDRAET4_4026 MFS transporter (fragment) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D MTUNDRAET4_2164 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D MTUNDRAET4_3834 Methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D MTUNDRAET4_3967 rsmD; 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D MTUNDRAET4_2480 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D MTUNDRAET4_3046 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D MTUNDRAET4_1821 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D MTUNDRAET4_0431 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D MTUNDRAET4_1164 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D MTUNDRAET4_0500 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D MTUNDRAET4_4021 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D MTUNDRAET4_1426 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D MTUNDRAET4_3556 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D MTUNDRAET4_2358 Dual-specificity RNA methyltransferase RlmN (fragment) K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D MTUNDRAET4_1164 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D MTUNDRAET4_1165 putative enzyme K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D MTUNDRAET4_0449 putative enzyme K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D MTUNDRAET4_3968 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D MTUNDRAET4_0094 Pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D MTUNDRAET4_2619 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C MTUNDRAET4_2484 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MTUNDRAET4_0651 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MTUNDRAET4_0539 30S ribosomal protein S5 alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C MTUNDRAET4_2497 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C MTUNDRAET4_0329 yliG; putative AdoMet-dependent methyltransferase, UPF0004 family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C MTUNDRAET4_2009 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C MTUNDRAET4_1396 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C MTUNDRAET4_1174 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C MTUNDRAET4_0303 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C MTUNDRAET4_1276 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C MTUNDRAET4_1395 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
C MTUNDRAET4_0273 der; GTPase Der K03977 engA; GTPase
C MTUNDRAET4_2059 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
C MTUNDRAET4_1126 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C MTUNDRAET4_0882 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C MTUNDRAET4_1400 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C MTUNDRAET4_2600 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C MTUNDRAET4_2605 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C MTUNDRAET4_1427 Ribosomal silencing factor RsfS (fragment) K09710 ybeB; ribosome-associated protein
C MTUNDRAET4_2487 ybeY; putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C MTUNDRAET4_3498 ychF; putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024