+E Transcription factors KO
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Transcription Factors - Myxococcus sp. MxC21-1
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D QEG98_00790 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D QEG98_21750 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D QEG98_32415 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D QEG98_13845 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D QEG98_34545 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D QEG98_04535 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D QEG98_15140 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
C DeoR family
C LacI family
C GntR family
D QEG98_34565 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D QEG98_28985 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D QEG98_29455 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D QEG98_37150 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D QEG98_14390 TetR/AcrR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D QEG98_34945 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D QEG98_27100 TetR/AcrR family transcriptional regulator K19060 mphR; TetR/AcrR family transcriptional regulator, macrolide resistance operon repressor
D QEG98_11780 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D QEG98_01275 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D QEG98_36805 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D QEG98_03795 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D QEG98_27765 MerR family transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D QEG98_01370 cobalamin-dependent protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D QEG98_05215 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D QEG98_19780 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D QEG98_39035 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D QEG98_20220 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D QEG98_27795 mrpC; Crp/Fnr family transcriptional regulator MrpC K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D QEG98_10200 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D QEG98_10415 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D QEG98_14340 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D QEG98_38640 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D QEG98_40320 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D QEG98_26915 short-chain fatty acyl-CoA regulator family protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D QEG98_22640 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D QEG98_40940 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D QEG98_01070 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D QEG98_35140 helix-turn-helix domain-containing protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D QEG98_27355 sigma 54-interacting transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D QEG98_21040 sigma 54-interacting transcriptional regulator K02584 nifA; Nif-specific regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D QEG98_39685 frmR; formaldehyde-responsive transcriptional repressor FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D QEG98_41790 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D QEG98_13300 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D QEG98_13920 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D QEG98_30880 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D QEG98_27680 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D QEG98_37540 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D QEG98_35935 PspC domain-containing protein K03973 pspC; phage shock protein C
D QEG98_20970 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D QEG98_10830 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D QEG98_17165 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D QEG98_31385 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D QEG98_39640 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D QEG98_16085 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D QEG98_25730 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D QEG98_26310 RNA repair transcriptional activator RtcR family protein K14414 rtcR; transcriptional regulatory protein RtcR
D QEG98_27060 rtcR; RNA repair transcriptional activator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D QEG98_30820 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0