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Transfer RNA Biogenesis - Maylandia zebra (zebra mbuna)
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D 101473147 pop1; ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
D 101486265 pop4; ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D 101473550 pop5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D 101470266 rpp30; ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D 101483103 rpp21; ribonuclease P protein subunit p21 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D 101465629 rpp14; ribonuclease P protein subunit p14 K14529 RPP14; ribonuclease P protein subunit RPP14 [EC:3.1.26.5]
D 101486199 pop7; ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
D 112432574 ribonuclease P protein subunit p20-like K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
D 101479391 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 101467860 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 101470544 ribonuclease P protein subunit p25-like K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 112435077 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 101467203 ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
D 106674462 ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
D 101481437 rpp40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D 101477441 elac1; zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 101483694 elac2; zinc phosphodiesterase ELAC protein 2 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 101487211 ribonuclease Oy K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 101486922 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 101465823 pentatricopeptide repeat-containing protein 1, mitochondrial K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1
C CCA adding factors
D 101471819 trnt1; CCA tRNA nucleotidyltransferase 1, mitochondrial K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
D 101463853 tRNA-splicing endonuclease subunit Sen2 isoform X1 K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
D 101487350 tsen34; tRNA-splicing endonuclease subunit Sen34 isoform X1 K15323 TSEN34; tRNA-splicing endonuclease subunit Sen34 [EC:4.6.1.16]
D 101479590 tsen15; tRNA-splicing endonuclease subunit Sen15 K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15
D 101464998 tsen54; tRNA-splicing endonuclease subunit Sen54 K15326 TSEN54; tRNA-splicing endonuclease subunit Sen54
C tRNA splicing ligase complex
D 101478440 rtcb; tRNA-splicing ligase RtcB homolog isoform X2 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D 101466140 lg16h2orf49; ashwin K15432 ASW; ashwin
D 101463624 rtraf; RNA transcription, translation and transport factor protein K15433 CGI99; RLL motif containing protein 1
D 101484728 fam98b; protein FAM98B K15434 FAM98B; protein FAM98B
D 106674583 protein FAM98B K15434 FAM98B; protein FAM98B
D 101477239 protein FAM98B K15434 FAM98B; protein FAM98B
D 101466291 ddx1; ATP-dependent RNA helicase DDX1 K13177 DDX1; ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
D 101480531 zbtb8os; protein archease K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
D 101469051 trpt1; tRNA 2'-phosphotransferase 1 K10669 TRPT1; 2'-phosphotransferase [EC:2.7.1.160]
B tRNA transport factors
C tRNA export factors
D 101467159 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 101478157 xpot; exportin-T K14288 XPOT; exportin-T
D 101465880 exportin-1 K14290 XPO1; exportin-1
D 101480205 exportin-1 isoform X1 K14290 XPO1; exportin-1
D 101474856 xpo5; exportin-5 K14289 XPO5; exportin-5
D 101482309 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 101482897 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 101469876 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
D 101472733 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 101485550 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
D 101484848 scyl1; N-terminal kinase-like protein K08876 SCYL1; SCY1-like protein 1
D 101478238 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
D 101485704 GTP-binding protein 1 isoform X2 K24887 GTPBP1; GTP-binding protein 1
C tRNA import factors
D 101473952 tnpo3; transportin-3 isoform X2 K15436 TRPO3; transportin-3
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 101475483 eprs; bifunctional glutamate/proline--tRNA ligase isoform X2 K14163 EPRS; bifunctional glutamyl/prolyl-tRNA synthetase [EC:6.1.1.17 6.1.1.15]
D 101475215 ears2; probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 101477380 pars2; probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 101482793 iars; isoleucine--tRNA ligase, cytoplasmic K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 101487949 iars2; isoleucine--tRNA ligase, mitochondrial K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 101487309 lars2; probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 101478855 lars; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 101469346 mars2; methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 101473500 mars; methionine--tRNA ligase, cytoplasmic isoform X1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 101467448 qars; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 101472042 rars2; probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 101485191 rars; arginine--tRNA ligase, cytoplasmic isoform X1 K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 101479955 kars; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 101477683 dars; aspartate--tRNA ligase, cytoplasmic K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 101482570 LOW QUALITY PROTEIN: aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 112436477 aspartate--tRNA ligase, mitochondrial-like K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 101471275 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 101475137 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 101467877 aimp1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 101481380 aimp2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform X1 K15438 AIMP2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2
D 101477342 eef1e1; eukaryotic translation elongation factor 1 epsilon-1 K15439 EEF1E1; eukaryotic translation elongation factor 1 epsilon-1
C Other AARSs
D 101479571 aars; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 101473611 aars2; alanine--tRNA ligase, mitochondrial K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 101475081 nars; asparagine--tRNA ligase, cytoplasmic K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 101487395 nars2; probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 101472906 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 101473206 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 101466193 threonine--tRNA ligase, cytoplasmic isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101487588 threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101475425 tars; threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101463977 sars; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 101484442 sars2; serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 101474250 cars2; probable cysteine--tRNA ligase, mitochondrial K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 101472322 cars; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 101465744 vars2; valine--tRNA ligase, mitochondrial isoform X1 K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 101472044 vars; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 101486075 hars; histidine--tRNA ligase, cytoplasmic isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 101472373 farsa; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 101480186 fars2; phenylalanine--tRNA ligase, mitochondrial isoform X1 K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 101471707 farsb; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 101468331 yars2; tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 101470094 yars; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 101480477 wars2; tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 101481100 wars; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D 101479930 dtd1; D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 101478225 dtd2; putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 101468233 aarsd1; alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D 101468187 trnau1ap; tRNA selenocysteine 1-associated protein 1 isoform X1 K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1
D 101468060 hint1; histidine triad nucleotide-binding protein 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 101473821 uncharacterized protein LOC101473821 isoform X1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 101484018 hint3; histidine triad nucleotide-binding protein 3 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 101481591 histidine triad nucleotide-binding protein 3-like K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 101481312 histidine triad nucleotide-binding protein 3 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
D 101472193 tRNA-specific adenosine deaminase 1 isoform X1 K15440 TAD1; tRNA-specific adenosine deaminase 1 [EC:3.5.4.34]
D 101480553 adat2; tRNA-specific adenosine deaminase 2 isoform X1 K15441 TAD2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
D 101481284 adat3; probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 K15442 TAD3; tRNA-specific adenosine deaminase 3
C Dihydorouridine synthases
D 101480750 dus1l; tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D 101468180 dus2; tRNA-dihydrouridine(20) synthase [NAD(P)+]-like K05543 DUS2; tRNA-dihydrouridine synthase 2 [EC:1.3.1.91]
D 101487919 dus3l; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
D 101485597 dus4l; tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like K05545 DUS4; tRNA-dihydrouridine synthase 4 [EC:1.3.1.90]
C Methylthiotransferase
D 101464179 cdkal1; threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D 101487551 trmt1; tRNA (guanine(26)-N(2))-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D 101486432 trmt2a; tRNA (uracil-5-)-methyltransferase homolog A K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
D 101485730 trmt2b; tRNA (uracil(54)-C(5))-methyltransferase homolog K15331 TRMT2B; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D 101484803 tarbp1; probable methyltransferase TARBP1 K15333 TRM3; tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
D 101476280 nsun2; tRNA (cytosine(34)-C(5))-methyltransferase K15335 NSUN2; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.203]
D 101475305 nsun3; tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.-]
D 101476017 nsun6; putative methyltransferase NSUN6 isoform X1 K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D 101484282 trmt5; tRNA (guanine(37)-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D 101464798 trmt61a; tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 101472853 trmt61b; tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 101467234 trmt6; tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 K03256 TRM6; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
D 101482450 ftsj1; putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase K14864 FTSJ1; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205]
D 101476098 mettl1; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 101467586 methyltransferase-like protein 2-A K24974 METTL2; tRNA N(3)-methylcytidine methyltransferase METTL2 [EC:2.1.1.-]
D 101480124 mettl6; methyltransferase-like protein 6 K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6 [EC:2.1.1.-]
D 101470566 alkbh8; alkylated DNA repair protein alkB homolog 8 K10770 ALKBH8; alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229]
D 101472646 tRNA methyltransferase 10 homolog A isoform X2 K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 101487910 trmt10b; tRNA methyltransferase 10 homolog B K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 101467248 trmt11; tRNA (guanine(10)-N2)-methyltransferase homolog K15430 TRM11; tRNA (guanine10-N2)-methyltransferase [EC:2.1.1.214]
D 101468812 trmt13; tRNA:m(4)X modification enzyme TRM13 homolog K15446 TRM13; tRNA:m4X modification enzyme [EC:2.1.1.225]
D 101485049 trmt44; probable tRNA (uracil-O(2)-)-methyltransferase isoform X2 K15447 TRM44; tRNASer (uridine44-2'-O)-methyltransferase [EC:2.1.1.211]
D 101476704 wdr4; tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 K15443 TRM82; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
D 101465827 trmt112; multifunctional methyltransferase subunit TRM112-like protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
D 101477362 trdmt1; tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 K15336 TRDMT1; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204]
D 101482111 trmo; tRNA (adenine(37)-N6)-methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D 101477816 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D 101477717 trmt12; tRNA wybutosine-synthesizing protein 2 homolog K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D 101471765 tyw3; tRNA wybutosine-synthesizing protein 3 homolog isoform X1 K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D 101474934 lcmt2; tRNA wybutosine-synthesizing protein 4 K15451 PPM2; tRNA wybutosine-synthesizing protein 4 [EC:2.1.1.290 2.3.1.231]
D 101474877 tRNA wybutosine-synthesizing protein 5 K18066 TYW5; tRNA wybutosine-synthesizing protein 5 [EC:1.14.11.42]
D 101478467 bcdin3d; pre-miRNA 5'-monophosphate methyltransferase K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 101478892 pus1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 101470046 pus3; tRNA pseudouridine(38/39) synthase K01855 PUS3; tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
D 101467354 trub1; probable tRNA pseudouridine synthase 1 isoform X1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 101464826 pus7; pseudouridylate synthase 7 homolog isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 101485099 pus7l; pseudouridylate synthase 7 homolog-like protein isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 101466177 pus10; putative tRNA pseudouridine synthase Pus10 isoform X1 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D 101484748 mitochondrial RNA pseudouridine synthase rpusd4 K22538 RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4 [EC:5.4.99.-]
C Thiolation factors
D 101471286 trmu; mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1 K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14]
D 101475461 ctu1; cytoplasmic tRNA 2-thiolation protein 1 K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D 101478202 cytoplasmic tRNA 2-thiolation protein 2 K14169 CTU2; cytoplasmic tRNA 2-thiolation protein 2
D 112433424 cytoplasmic tRNA 2-thiolation protein 2-like K14169 CTU2; cytoplasmic tRNA 2-thiolation protein 2
D 101486290 nfs1; cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D 101465579 urm1; ubiquitin-related modifier 1 K12161 URM1; ubiquitin related modifier 1
D 101465605 mocs3; adenylyltransferase and sulfurtransferase MOCS3 K11996 MOCS3; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11]
C KEOPS/EKC complex
D 101472955 tp53rk; TP53-regulating kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 101474003 osgep; probable tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 101480122 osgepl1; probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 101470519 tprkb; EKC/KEOPS complex subunit TPRKB K15901 TPRKB; EKC/KEOPS complex subunit TPRKB/CGI121
D 101482998 lage3; EKC/KEOPS complex subunit LAGE3 K15902 LAGE3; EKC/KEOPS complex subunit LAGE3/PCC1
C Elongator complex
D 101471349 elp1; elongator complex protein 1 K11373 ELP1; elongator complex protein 1
D 101478752 elp2; elongator complex protein 2 K11374 ELP2; elongator complex protein 2
D 101483525 elp3; elongator complex protein 3 K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D 101485481 elp4; elongator complex protein 4 K11375 ELP4; elongator complex protein 4
D 101484214 elp5; elongator complex protein 5 K11376 ELP5; elongator complex protein 5
D 101466469 elp6; elongator complex protein 6 K11377 ELP6; elongator complex protein 6
C Elongator related proteins
D 101468476 DPH3 homolog K15455 DPH3; diphthamide biosynthesis protein 3
D 101464609 kti12; protein KTI12 homolog K15456 KTI12; protein KTI12
C Other tRNA modification factors
D 101475338 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D 101486980 trit1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 101484796 gtpbp3; tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 101466719 mto1; protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 101473634 qtrt1; queuine tRNA-ribosyltransferase catalytic subunit 1 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64]
D 101465059 qtrt2; queuine tRNA-ribosyltransferase accessory subunit 2 isoform X1 K15407 QTRT2; queuine tRNA-ribosyltransferase accessory subunit
D 101467882 selenide, water dikinase 1-like K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 101482138 sephs1; selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 101472210 thumpd1; THUMP domain-containing protein 1 K06963 TAN1; tRNA acetyltransferase TAN1
D 101485778 thg1l; probable tRNA(His) guanylyltransferase isoform X1 K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D 101465574 ate1; arginyl-tRNA--protein transferase 1 isoform X1 K00685 ATE1; arginyl-tRNA---protein transferase [EC:2.3.2.8]
D 101467492 dalrd3; DALR anticodon-binding domain-containing protein 3 K24973 DALRD3; DALR anticodon-binding domain-containing protein 3
B tRNA degradation factors
C TRAMP complex
D 101475088 non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 101472871 non-canonical poly(A) RNA polymerase PAPD7 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 101480725 tent4b; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 101469249 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
D 101473162 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
D 112434431 zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
D 101471175 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C Rapid tRNA decay (RTD) pathway factors
D 101463778 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 101473736 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D 101472917 bpnt1; 3'(2'),5'-bisphosphate nucleotidase 1 K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
D 101478727 interferon-induced protein with tetratricopeptide repeats 5 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
D 101477626 interferon-induced protein with tetratricopeptide repeats 5 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
D 101479007 interferon-induced protein with tetratricopeptide repeats 5 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
D 101477920 interferon-induced protein with tetratricopeptide repeats 5 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
D 101478182 interferon-induced protein with tetratricopeptide repeats 1 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D 101477441 elac1; zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 101483694 elac2; zinc phosphodiesterase ELAC protein 2 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 101487211 ribonuclease Oy K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 101486922 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D 101471819 trnt1; CCA tRNA nucleotidyltransferase 1, mitochondrial K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D 101478440 rtcb; tRNA-splicing ligase RtcB homolog isoform X2 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 101487309 lars2; probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 101478855 lars; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 101477380 pars2; probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D 101468331 yars2; tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 101470094 yars; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 101480477 wars2; tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 101481100 wars; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 101466193 threonine--tRNA ligase, cytoplasmic isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101487588 threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101475425 tars; threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 101482793 iars; isoleucine--tRNA ligase, cytoplasmic K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 101487949 iars2; isoleucine--tRNA ligase, mitochondrial K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 101479955 kars; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 101479571 aars; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 101473611 aars2; alanine--tRNA ligase, mitochondrial K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 101465744 vars2; valine--tRNA ligase, mitochondrial isoform X1 K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 101472044 vars; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 101469346 mars2; methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 101473500 mars; methionine--tRNA ligase, cytoplasmic isoform X1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 101463977 sars; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 101484442 sars2; serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 101482570 LOW QUALITY PROTEIN: aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 112436477 aspartate--tRNA ligase, mitochondrial-like K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 101474250 cars2; probable cysteine--tRNA ligase, mitochondrial K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 101472322 cars; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 101475215 ears2; probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 101467448 qars; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 101472042 rars2; probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 101485191 rars; arginine--tRNA ligase, cytoplasmic isoform X1 K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 101472373 farsa; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 101480186 fars2; phenylalanine--tRNA ligase, mitochondrial isoform X1 K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 101471707 farsb; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 101486075 hars; histidine--tRNA ligase, cytoplasmic isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 101475081 nars; asparagine--tRNA ligase, cytoplasmic K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 101487395 nars2; probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D 101479930 dtd1; D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 101478225 dtd2; putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 101468233 aarsd1; alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D 101476098 mettl1; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 101484796 gtpbp3; tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 101482111 trmo; tRNA (adenine(37)-N6)-methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 101478892 pus1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 101467354 trub1; probable tRNA pseudouridine synthase 1 isoform X1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 101464826 pus7; pseudouridylate synthase 7 homolog isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 101485099 pus7l; pseudouridylate synthase 7 homolog-like protein isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D 101486290 nfs1; cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D 101472955 tp53rk; TP53-regulating kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 101474003 osgep; probable tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 101480122 osgepl1; probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Other tRNA modification factors
D 101466719 mto1; protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 101486980 trit1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 101476104 pts; 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D 101467882 selenide, water dikinase 1-like K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 101482138 sephs1; selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 101475338 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
C 101486762 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024