+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Methanolobus zinderi

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs D HWN40_12535 NOP58 family protein K14564 NOP56; nucleolar protein 56 C Box H/ACA snoRNPs D HWN40_02415 RNA-protein complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B 90S particles C U3 small nucleolar RNA-associated proteins D HWN40_09040 rRNA maturation protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 C Helicases C GTPase C RNase C Kinase C Other 90S particles D HWN40_13110 RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein B Pre-40S particles C Kinases D HWN40_13105 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D HWN40_04375 serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D HWN40_12035 AAA family ATPase K18532 AK6; adenylate kinase [EC:2.7.4.3] D HWN40_04435 DUF367 family protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] C Other pre-40S particles D HWN40_12825 ribosome biogenesis/translation initiation ATPase RLI K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases C GTPases D HWN40_00610 NOG1 family protein K06943 NOG1; nucleolar GTP-binding protein C RNases D RNase MRP E HWN40_02885 ribonuclease P protein component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] E HWN40_09080 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] E HWN40_09085 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] C Kinases C Export and cytoplasmic maturation factors D HWN40_05015 translation initiation factor IF-6 K03264 EIF6; translation initiation factor 6 D HWN40_08285 NMD protein affecting ribosome stability and mRNA decay K07562 NMD3; 60S ribosomal export protein NMD3 D HWN40_09070 ribosome assembly factor SBDS K14574 SDO1; ribosome maturation protein SDO1 C 5-FMC complex C Ribosome quality control proteins D HWN40_02200 CDC48 family AAA ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D HWN40_11790 CDC48 family AAA ATPase K13525 VCP; transitional endoplasmic reticulum ATPase C Other pre-60S particles B Other ribosome biogenesis factors C HWN40_00635 GTP-binding protein K03595 era; GTPase # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D HWN40_12535 NOP58 family protein K14564 NOP56; nucleolar protein 56 D HWN40_12530 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein D HWN40_08390 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D HWN40_04205 H/ACA RNA-protein complex protein Gar1 K07569 gar1; RNA-binding protein D HWN40_02415 RNA-protein complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors C HWN40_03430 NusA-like transcription termination signal-binding factor K02600 nusA; transcription termination/antitermination protein NusA B rRNA modification factors C 16S rRNA modification factors D HWN40_08790 16S ribosomal RNA methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D HWN40_07810 methyltransferase domain-containing protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D HWN40_03580 TRAM domain-containing protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D HWN40_07810 methyltransferase domain-containing protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] B ribosomal protein modification factors C HWN40_06160 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C HWN40_12385 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C HWN40_01310 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C HWN40_07510 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] B rRNA processing factors B rRNA helicases C HWN40_07035 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C HWN40_08760 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C HWN40_00635 GTP-binding protein K03595 era; GTPase C HWN40_07545 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C HWN40_03785 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C HWN40_08355 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C HWN40_12270 YhbY family RNA-binding protein K07574 yhbY; RNA-binding protein C HWN40_12395 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024