+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Nocardioides aquaticus

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D ENKNEFLB_01362 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D ENKNEFLB_01441 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D ENKNEFLB_03427 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 55LCC heterohexameric ATPase complex C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C ENKNEFLB_01996 era; GTPase Era K03595 era; GTPase C ENKNEFLB_03354 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C ENKNEFLB_03202 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor C ENKNEFLB_03856 dksA_2; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor C ENKNEFLB_01460 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C ENKNEFLB_02756 nusB; Transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C ENKNEFLB_04076 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D ENKNEFLB_03980 ksgA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D ENKNEFLB_02730 Putative methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ENKNEFLB_01358 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D ENKNEFLB_01986 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D ENKNEFLB_04484 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D ENKNEFLB_03219 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D ENKNEFLB_03985 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D ENKNEFLB_02051 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D ENKNEFLB_00918 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D ENKNEFLB_01418 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D ENKNEFLB_02051 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D ENKNEFLB_03853 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D ENKNEFLB_02066 putative RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D ENKNEFLB_03200 putative RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C ENKNEFLB_01119 rimI_1; N-alpha-acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase / [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338] C ENKNEFLB_04007 ydaF_3; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C ENKNEFLB_01379 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C ENKNEFLB_02942 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C ENKNEFLB_00256 prmC_1; Release factor glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] B rRNA processing factors C ENKNEFLB_01362 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C ENKNEFLB_03357 rng; Ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] C ENKNEFLB_02765 Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C ENKNEFLB_04383 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C ENKNEFLB_01996 era; GTPase Era K03595 era; GTPase C ENKNEFLB_01799 rsgA_1; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C ENKNEFLB_02074 der; GTPase Der K03977 engA; GTPase C ENKNEFLB_03354 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C ENKNEFLB_03944 hflX_2; GTPase HflX K03665 hflX; GTPase B Other maturation factors C ENKNEFLB_01847 Putative threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C ENKNEFLB_02779 relA_1; Bifunctional (p)ppGpp synthase/hydrolase RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C ENKNEFLB_01463 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C ENKNEFLB_01459 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C ENKNEFLB_01794 ybcJ; putative protein YbcJ K14761 rlbA; ribosome-associated protein C ENKNEFLB_01922 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C ENKNEFLB_01991 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C ENKNEFLB_03699 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C ENKNEFLB_01360 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 24, 2026