+F Repair protein KO #

  DNA Repair and Recombination Proteins - Natrialbaceae archaeon AArc-T1-2

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D QQ977_03415 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D QQ977_03890 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E QQ977_03870 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E QQ977_05800 DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E QQ977_00290 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E QQ977_10490 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E QQ977_01255 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E QQ977_09095 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E QQ977_12080 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E QQ977_01325 ligA; ATP-dependent DNA ligase LigA K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E QQ977_15400 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E QQ977_07475 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E QQ977_09950 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E QQ977_06350 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D Other NER factors E QQ977_01325 ligA; ATP-dependent DNA ligase LigA K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E QQ977_06350 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E QQ977_01255 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E QQ977_09095 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E QQ977_01325 ligA; ATP-dependent DNA ligase LigA K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E QQ977_06350 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D QQ977_01255 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen D QQ977_09095 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D QQ977_07685 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D QQ977_11710 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D QQ977_15750 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D QQ977_03415 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D QQ977_03890 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E QQ977_01535 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E QQ977_06225 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E QQ977_07280 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E QQ977_11620 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E QQ977_03870 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E QQ977_00290 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E QQ977_10490 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E QQ977_09735 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E QQ977_02605 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E QQ977_08220 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E QQ977_06255 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E QQ977_04695 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E QQ977_06325 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E QQ977_08270 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E QQ977_00985 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E QQ977_15330 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E QQ977_06255 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E QQ977_03740 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E QQ977_07435 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E QQ977_02295 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 E QQ977_04665 helix-hairpin-helix domain-containing protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E QQ977_09160 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E QQ977_06255 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E QQ977_00985 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E QQ977_15330 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E QQ977_02520 rad50; DNA double-strand break repair ATPase Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E QQ977_02525 mre11; DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E QQ977_08220 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E QQ977_16020 cas1b; type I-B CRISPR-associated endonuclease Cas1b K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E QQ977_08365 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E QQ977_03925 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E QQ977_09915 hjc; Holliday junction resolvase Hjc K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E QQ977_02520 rad50; DNA double-strand break repair ATPase Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E QQ977_02525 mre11; DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 E QQ977_07415 ATP-dependent DNA helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F QQ977_11025 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F QQ977_11020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F QQ977_08245 DUF91 domain-containing protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F QQ977_09675 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F QQ977_08220 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F QQ977_06255 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F QQ977_04695 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F QQ977_06325 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D QQ977_04320 dinB; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D QQ977_14600 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) C DNA helicases D QQ977_00305 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D QQ977_13775 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D QQ977_07685 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D QQ977_11710 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D QQ977_15750 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D QQ977_04015 LAGLIDADG family homing endonuclease K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D QQ977_09775 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D QQ977_10105 nreA; DNA repair protein NreA K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024