+E Transcription factors KO #

  Transcription Factors - Natrinema sp. J7-2

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others D NJ7G_0704 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins D NJ7G_0584 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family C DeoR family C LacI family C GntR family C TetR/AcrR family D NJ7G_1526 regulatory protein TetR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase C Lrp/AsnC family D NJ7G_3610 Transcription regulator AsnC-type-like protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA C LuxR family C MarR family C MerR family C Fur family C IclR family D NJ7G_1898 Transcriptional regulator IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D NJ7G_1959 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D NJ7G_0106 Transcriptional regulator IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D NJ7G_1946 Transcriptional regulator IclR K21827 arcR; IclR family transcriptional regulator, arginine deiminase pathway regulator D NJ7G_1938 Transcriptional regulator IclR K21827 arcR; IclR family transcriptional regulator, arginine deiminase pathway regulator C CRP/FNR family C Rrf2 family C ArsR family D NJ7G_0531 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D NJ7G_2570 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D NJ7G_2684 PhiH1 repressor-like protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D NJ7G_2686 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D NJ7G_3781 MarR family transcriptional regulator K07721 K07721; ArsR family transcriptional regulator C XRE family D NJ7G_3692 Phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D NJ7G_1102 Phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator C PadR family D NJ7G_2535 PadR family transcriptional regulator K23305 gvpE; PadR family transcriptional regulator, activator of gas vesicle formation C Other families D NJ7G_1029 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NJ7G_0852 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NJ7G_3138 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NJ7G_3968 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NJ7G_1979 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NJ7G_0862 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NJ7G_3037 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NJ7G_2955 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NJ7G_0096 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NJ7G_2655 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NJ7G_0993 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_0213 Bacterio-opsin activator HTH domain protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_0605 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_1606 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_1601 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_3548 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_4001 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_1422 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_1441 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_3971 Bacterio-opsin activator HTH domain protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D NJ7G_4124 Bacterio-opsin activator HTH domain protein K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator D NJ7G_2762 DNA-binding protein, Tfx family K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D NJ7G_1069 phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism D NJ7G_3552 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D NJ7G_1332 helix-turn-helix domain protein K07728 K07728; putative transcriptional regulator D NJ7G_3806 regulatory protein IclR K07730 K07730; putative transcriptional regulator D NJ7G_0806 helix-turn-helix domain protein K07731 K07731; putative transcriptional regulator B Ribbon-helix-helix C CopG family D NJ7G_1930 Ribbon-helix-helix protein, copG family domain protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D NJ7G_1531 CopG family transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D NJ7G_3343 NikR nickel binding protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families B Other transcription factors C BglG family C Others D NJ7G_0967 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NJ7G_3269 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D NJ7G_1932 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0