+E Transcription factors KO
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Transcription Factors - Natrinema sp. J7-2
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
D NJ7G_0704 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
D NJ7G_0584 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
C DeoR family
C LacI family
C GntR family
C TetR/AcrR family
D NJ7G_1526 regulatory protein TetR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
C Lrp/AsnC family
D NJ7G_3610 Transcription regulator AsnC-type-like protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
C LuxR family
C MarR family
C MerR family
C Fur family
C IclR family
D NJ7G_1898 Transcriptional regulator IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D NJ7G_1959 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D NJ7G_0106 Transcriptional regulator IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D NJ7G_1946 Transcriptional regulator IclR K21827 arcR; IclR family transcriptional regulator, arginine deiminase pathway regulator
D NJ7G_1938 Transcriptional regulator IclR K21827 arcR; IclR family transcriptional regulator, arginine deiminase pathway regulator
C CRP/FNR family
C Rrf2 family
C ArsR family
D NJ7G_0531 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NJ7G_2570 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D NJ7G_2684 PhiH1 repressor-like protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D NJ7G_2686 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D NJ7G_3781 MarR family transcriptional regulator K07721 K07721; ArsR family transcriptional regulator
C XRE family
D NJ7G_3692 Phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
D NJ7G_1102 Phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
C PadR family
D NJ7G_2535 PadR family transcriptional regulator K23305 gvpE; PadR family transcriptional regulator, activator of gas vesicle formation
C Other families
D NJ7G_1029 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NJ7G_0852 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NJ7G_3138 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NJ7G_3968 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NJ7G_1979 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NJ7G_0862 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D NJ7G_3037 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D NJ7G_2955 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D NJ7G_0096 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D NJ7G_2655 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D NJ7G_0993 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_0213 Bacterio-opsin activator HTH domain protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_0605 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_1606 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_1601 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_3548 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_4001 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_1422 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_1441 PAS sensor protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_3971 Bacterio-opsin activator HTH domain protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D NJ7G_4124 Bacterio-opsin activator HTH domain protein K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D NJ7G_2762 DNA-binding protein, Tfx family K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator
D NJ7G_1069 phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D NJ7G_3552 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein
D NJ7G_1332 helix-turn-helix domain protein K07728 K07728; putative transcriptional regulator
D NJ7G_3806 regulatory protein IclR K07730 K07730; putative transcriptional regulator
D NJ7G_0806 helix-turn-helix domain protein K07731 K07731; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D NJ7G_1930 Ribbon-helix-helix protein, copG family domain protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D NJ7G_1531 CopG family transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D NJ7G_3343 NikR nickel binding protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
B Other transcription factors
C BglG family
C Others
D NJ7G_0967 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NJ7G_3269 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NJ7G_1932 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0