+D GENES KO #

  KEGG Orthology (KO) - Candidatus Nitrosopelagicus brevis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:nbv00010] D T478_0198 putative bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D T478_0862 fructose-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D T478_0480 3-deoxy-7-phosphoheptulonate synthase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D T478_0637 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D T478_0731 putative glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D T478_0450 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D T478_0208 histidine phosphatase superfamily (branch 1) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D T478_1093 apgM; phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D T478_0636 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D T478_1102 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D T478_1101 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_1123 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:nbv00020] D T478_0906 2-methylcitrate synthase/citrate synthase II K01647 CS; citrate synthase [EC:2.3.3.1] D T478_0320 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D T478_1072 putative 3-isopropylmalate/3-methylmalate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D T478_1102 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D T478_1101 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D T478_0927 oxidoreductase, NAD-binding domain protein K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D T478_0926 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D T478_1194 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D T478_1190 putative fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D T478_1193 succinate dehydrogenase/fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D T478_1192 succinate dehydrogenase/fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_1123 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00030 Pentose phosphate pathway [PATH:nbv00030] D T478_0198 putative bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D T478_1212 transketolase, pyridine binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D T478_1213 putative ribulose-phosphate 3-epimerase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D T478_1211 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D T478_1241 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0015 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D T478_0908 MOFRL family protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D T478_0862 fructose-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D T478_0480 3-deoxy-7-phosphoheptulonate synthase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] C 00040 Pentose and glucuronate interconversions [PATH:nbv00040] D T478_0134 putative UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D T478_0135 nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D T478_0891 alcohol dehydrogenase, catalytic domain, GroES-like family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] C 00051 Fructose and mannose metabolism [PATH:nbv00051] D T478_1272 putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D T478_0198 putative bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0741 MobA-like NTP transferase domain protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D T478_0891 alcohol dehydrogenase, catalytic domain, GroES-like family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D T478_0862 fructose-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D T478_0480 3-deoxy-7-phosphoheptulonate synthase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D T478_0637 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:nbv00052] D T478_1091 galactose-1-phosphate uridyl transferase, N-terminal domain protein K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D T478_0133 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0147 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0180 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0135 nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00053 Ascorbate and aldarate metabolism D T478_0134 putative UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:nbv00500] D T478_0135 nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0198 putative bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D T478_1272 putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:nbv00520] D T478_1272 putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D T478_0255 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D T478_0464 acetyltransferase (GNAT) domain protein K00621 GNPNAT1; glucosamine-phosphate N-acetyltransferase [EC:2.3.1.4] D T478_0186 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0135 nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D T478_0134 putative UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D T478_1091 galactose-1-phosphate uridyl transferase, N-terminal domain protein K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D T478_0133 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0147 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0180 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D T478_0198 putative bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D T478_0741 MobA-like NTP transferase domain protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D T478_0150 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102] D T478_0169 putative spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102] D T478_0191 putative spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:nbv00620] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D T478_1102 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D T478_1101 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0118 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D T478_0753 glyoxalase-like domain protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D T478_0254 metallo-beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_1123 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D T478_0636 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0886 isopropylmalate/citramalate/homocitrate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:nbv00630] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_0906 2-methylcitrate synthase/citrate synthase II K01647 CS; citrate synthase [EC:2.3.3.1] D T478_0320 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0629 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0162 putative methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0626 B12 binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D T478_0628 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D T478_1105 acetohydroxy acid isomeroreductase, catalytic domain protein K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D T478_0876 phosphoglycolate phosphatase, TA0175-type K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D T478_1497 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D T478_0908 MOFRL family protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D T478_1235 putative formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:nbv00640] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D T478_0629 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0162 putative methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0626 B12 binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D T478_0628 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D T478_0926 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D T478_0927 oxidoreductase, NAD-binding domain protein K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:nbv00650] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_1194 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D T478_1190 putative fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D T478_1193 succinate dehydrogenase/fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D T478_1192 succinate dehydrogenase/fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D T478_1248 abfD; gamma-aminobutyrate metabolism dehydratase/isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D T478_1102 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D T478_1101 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D T478_0729 hydroxymethylglutaryl-coenzyme A synthase C-terminal K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D T478_0888 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D T478_0887 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:nbv00660] D T478_0888 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D T478_0887 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D T478_0926 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D T478_0927 oxidoreductase, NAD-binding domain protein K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D T478_0395 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D T478_0397 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D T478_0396 putative 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D T478_0398 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D T478_0885 putative 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:nbv00562] D T478_1182 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D T478_0541 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D T478_0637 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:nbv00190] D T478_1172 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D T478_1171 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D T478_1169 putative NAD(P)H-quinone oxidoreductase subunit H K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D T478_1168 NADH dehydrogenase K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D T478_1167 4Fe-4S binding domain protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D T478_1163 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D T478_1164 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D T478_1161 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D T478_0633 pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D T478_1194 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D T478_1190 putative fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D T478_1193 succinate dehydrogenase/fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D T478_1192 succinate dehydrogenase/fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D T478_1266 cytochrome B(C-terminal)/b6/PetD K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D T478_0506 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_1312 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_0211 putative cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D T478_0210 cupredoxin-like domain protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D T478_1372 ATP synthase alpha/beta chain, C-terminal domain protein K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D T478_1371 ATP synthase alpha/beta chain, C-terminal domain protein K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D T478_1380 ATP synthase, subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D T478_1370 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D T478_1373 ATP synthase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D T478_0892 ATP synthase, subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D T478_1319 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D T478_1374 V-type ATPase 116kDa subunit family protein K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:nbv00710] D T478_0450 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D T478_0731 putative glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D T478_1212 transketolase, pyridine binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D T478_1213 putative ribulose-phosphate 3-epimerase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D T478_1241 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D T478_0637 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D T478_1211 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D T478_1123 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D T478_0636 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:nbv00720] D T478_0636 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_1194 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D T478_1190 putative fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D T478_1193 succinate dehydrogenase/fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D T478_1192 succinate dehydrogenase/fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D T478_0927 oxidoreductase, NAD-binding domain protein K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D T478_0926 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D T478_1249 putative acetyl coenzyme A synthetase (ADP forming), alpha domain protein K18593 E6.2.1.56; 4-hydroxybutyrate---CoA ligase (ADP-forming) [EC:6.2.1.56] D T478_1248 abfD; gamma-aminobutyrate metabolism dehydratase/isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D T478_0855 3-hydroxybutyryl-CoA dehydrogenase family protein K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_1102 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D T478_1101 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D T478_0320 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D T478_1175 putative acetyl-CoA carboxylase, biotin carboxylase subunit K18603 K18603; acetyl-CoA/propionyl-CoA carboxylase [EC:6.4.1.2 6.4.1.3] D T478_1176 carboxyl transferase domain protein K18604 K18604; acetyl-CoA/propionyl-CoA carboxylase [EC:6.4.1.2 6.4.1.3 2.1.3.15] D T478_1174 biotin-requiring enzyme K18605 K18605; biotin carboxyl carrier protein D T478_0910 alcohol dehydrogenase, iron-dependent K18602 K18602; malonic semialdehyde reductase [EC:1.1.1.-] D T478_1058 ATP-grasp domain protein K18594 K18594; 3-hydroxypropionyl-CoA synthetase (ADP-forming) [EC:6.2.1.-] D T478_1057 3-hydroxybutyryl-CoA dehydratase K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] D T478_0629 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0162 putative methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0628 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D T478_0626 B12 binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D T478_0921 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:nbv00680] D T478_0302 hypothetical protein K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39] D T478_0298 monooxygenase subunit B domain protein K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B D T478_0300 ammonia monooxygenase/methane monooxygenase, subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C D T478_1497 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D T478_0908 MOFRL family protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_0862 fructose-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D T478_0480 3-deoxy-7-phosphoheptulonate synthase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D T478_0208 histidine phosphatase superfamily (branch 1) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D T478_1093 apgM; phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D T478_1025 pdxB; 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D T478_0549 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D T478_0980 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D T478_0979 cofD; 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D T478_0550 cofE; coenzyme F420-0:L-glutamate ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] C 00910 Nitrogen metabolism [PATH:nbv00910] D T478_1026 multicopper oxidase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D T478_0302 hypothetical protein K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39] D T478_0298 monooxygenase subunit B domain protein K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B D T478_0300 ammonia monooxygenase/methane monooxygenase, subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C D T478_1059 putative glutamate dehydrogenase (NAD(P)(+)) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism [PATH:nbv00920] D T478_1040 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D T478_1037 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D T478_1039 ABC transporter, ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D T478_0046 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D T478_0022 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D T478_0021 putative 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D T478_0045 adenylylsulfate reductase, thioredoxin dependent K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D T478_0556 nitrite/sulfite reductase, 4Fe-4S iron-sulfur cluster-binding domain protein K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1] D T478_1377 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D T478_0557 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:nbv00061] D T478_0163 phosphopantetheine attachment domain protein K02078 acpP; acyl carrier protein D T478_0329 enoyl-(Acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:nbv00071] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D T478_0908 MOFRL family protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] C 00564 Glycerophospholipid metabolism [PATH:nbv00564] D T478_1440 putative NAD(P)-dependent glycerol-1-phosphate dehydrogenase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D T478_1498 phosphoglycerol geranylgeranyltransferase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D T478_0975 geranylgeranyl reductase family K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] D T478_0510 geranylgeranyl reductase family K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:nbv00230] D T478_1429 NUDIX-type nucleoside diphosphatase, YffH/AdpP family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0015 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D T478_0688 putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D T478_0922 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D T478_0919 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D T478_0687 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D T478_0685 purS; phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D T478_0686 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D T478_1006 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D T478_0745 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D T478_0747 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D T478_0692 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D T478_0327 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D T478_0670 PF06849 family protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D T478_0775 PF06849 family protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D T478_0377 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D T478_1277 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D T478_1229 ndk; nucleoside pyrophosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D T478_0226 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D T478_0358 NUDIX domain protein K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D T478_1273 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D T478_1341 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D T478_0081 HD domain protein K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] D T478_0751 adenylate/guanylate cyclase catalytic domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D T478_0356 adenylosuccinate synthase-like protein K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D T478_1302 putative adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D T478_1112 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] D T478_1255 AAA domain protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D T478_0418 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D T478_0022 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D T478_0046 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:nbv00240] D T478_0899 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D T478_1366 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D T478_1367 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D T478_1081 putative dihydroorotate oxidase, catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D T478_1080 oxidoreductase NAD-binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D T478_1157 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D T478_0359 putative orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D T478_1387 putative uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D T478_1229 ndk; nucleoside pyrophosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D T478_0358 NUDIX domain protein K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D T478_0794 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D T478_1110 putative cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D T478_1341 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D T478_0640 cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12] D T478_1389 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:nbv00250] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_0328 queuosine biosynthesis protein QueC-like protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0813 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0137 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0205 alanine transaminase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D T478_1027 fumarase C C-terminal domain protein K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D T478_1041 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D T478_1189 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D T478_0356 adenylosuccinate synthase-like protein K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D T478_0327 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D T478_1366 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D T478_1367 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D T478_1059 putative glutamate dehydrogenase (NAD(P)(+)) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D T478_0899 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D T478_0686 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D T478_0255 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D T478_0688 putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:nbv00260] D T478_1464 putative aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_0219 amino acid kinase family protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_1310 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D T478_0835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D T478_0037 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D T478_1297 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D T478_0733 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D T478_1497 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D T478_0908 MOFRL family protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D T478_0208 histidine phosphatase superfamily (branch 1) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D T478_1093 apgM; phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D T478_1025 pdxB; 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D T478_0549 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D T478_0746 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D T478_0792 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D T478_0791 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:nbv00270] D T478_0095 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D T478_0375 mtnP; methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D T478_0200 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D T478_1407 putative modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D T478_0822 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D T478_1464 putative aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_0219 amino acid kinase family protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_1310 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D T478_0835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D T478_1202 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0218 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_1377 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D T478_0557 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D T478_0268 putative malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D T478_1025 pdxB; 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:nbv00280] D T478_1202 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0218 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0629 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0162 putative methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D T478_0626 B12 binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D T478_0628 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D T478_0543 NADP oxidoreductase coenzyme F420-dependent K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0729 hydroxymethylglutaryl-coenzyme A synthase C-terminal K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:nbv00290] D T478_0746 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D T478_0395 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D T478_0397 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D T478_0396 putative 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D T478_0398 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D T478_0885 putative 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D T478_0888 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D T478_0887 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D T478_0625 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D T478_0785 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D T478_1202 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0218 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0205 alanine transaminase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D T478_0886 isopropylmalate/citramalate/homocitrate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:nbv00300] D T478_0835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D T478_1464 putative aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_0219 amino acid kinase family protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_1310 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D T478_1042 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D T478_1049 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D T478_1043 lysX; lysine biosynthesis enzyme LysX K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43] D T478_1050 lysX; lysine biosynthesis enzyme LysX K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43] D T478_1045 argB; acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D T478_1044 argC; N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D T478_1046 argD; transaminase, acetylornithine/succinylornithine family K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D T478_1051 N-acetyl-ornithine/N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00310 Lysine degradation [PATH:nbv00310] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_1106 FAD dependent oxidoreductase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13] C 00220 Arginine biosynthesis [PATH:nbv00220] D T478_1118 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D T478_1041 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D T478_1189 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D T478_0686 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D T478_0899 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D T478_1059 putative glutamate dehydrogenase (NAD(P)(+)) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_0205 alanine transaminase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D T478_1042 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D T478_1049 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D T478_1045 argB; acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D T478_1044 argC; N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D T478_1046 argD; transaminase, acetylornithine/succinylornithine family K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D T478_1051 N-acetyl-ornithine/N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00330 Arginine and proline metabolism [PATH:nbv00330] D T478_1236 creatininase family amidohydrolase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D T478_0571 hydantoinase/oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D T478_0938 arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D T478_0798 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:nbv00340] D T478_1288 ATP phosphoribosyltransferase HisG K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D T478_0767 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D T478_1294 putative 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D T478_1293 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D T478_1295 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D T478_1292 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D T478_1289 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D T478_0971 egtD; dimethylhistidine N-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:nbv00350] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00360 Phenylalanine metabolism [PATH:nbv00360] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D T478_0447 Rieske [2Fe-2S] domain protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D T478_0233 putative 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component C 00380 Tryptophan metabolism D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:nbv00400] D T478_0480 3-deoxy-7-phosphoheptulonate synthase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D T478_0479 3-dehydroquinate synthase K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24] D T478_0477 aroD; 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D T478_0475 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D T478_0474 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D T478_0472 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D T478_0787 anthranilate synthase component I, N-terminal domain protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D T478_0788 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D T478_0789 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D T478_0792 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D T478_0791 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D T478_1278 prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D T478_0470 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism D T478_1432 PF02006 family protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism D T478_1059 putative glutamate dehydrogenase (NAD(P)(+)) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:nbv00450] D T478_0448 sufS; cysteine desulfurase, SufS family K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D T478_1475 aminotransferase, class V K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D T478_0553 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D T478_0046 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D T478_0821 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D T478_1497 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:nbv00470] D T478_0686 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D T478_0055 putative glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] C 00480 Glutathione metabolism [PATH:nbv00480] D T478_1215 cytosol aminopeptidase family, catalytic domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:nbv00730] D T478_0469 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D T478_0467 thiD; hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D T478_0555 thiazole biosynthesis enzyme K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D T478_0334 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D T478_1112 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:nbv00740] D T478_1328 GGDN family protein K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29] D T478_1325 putative diaminohydroxyphosphoribosylaminopyrimidine reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D T478_1330 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D T478_1329 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D T478_1331 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D T478_1053 PF01982 domain protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D T478_1054 putative cytidyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2] D T478_1447 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D T478_1429 NUDIX-type nucleoside diphosphatase, YffH/AdpP family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D T478_0672 bsdB; phenolic acid decarboxylase subunit B K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:nbv00750] D T478_1297 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D T478_0733 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D T478_0323 putative pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D T478_0325 pdxT; pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:nbv00760] D T478_0473 nadX; aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D T478_0492 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D T478_0491 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D T478_1443 putative nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D T478_0824 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D T478_0412 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D T478_0793 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:nbv00770] D T478_0888 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D T478_0887 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D T478_0625 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D T478_0785 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D T478_1433 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D T478_1431 GHMP kinase, N-terminal domain protein K06982 pok; pantoate kinase [EC:2.7.1.169] D T478_1432 PF02006 family protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D T478_1434 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D T478_0310 putative pantetheine-phosphate adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D T478_0497 PF04019 family protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D T478_0160 putative holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D T478_1202 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0218 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:nbv00780] D T478_0329 enoyl-(Acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D T478_0726 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D T478_0728 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D T478_0725 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D T478_0586 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:nbv00790] D T478_0034 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D T478_1276 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D T478_0278 putative queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D T478_0326 phhB; 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D T478_0842 4Fe-4S single cluster domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D T478_0036 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D T478_1275 PF01973 family protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] C 00670 One carbon pool by folate [PATH:nbv00670] D T478_0921 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D T478_1497 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D T478_0919 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D T478_0187 formyl transferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D T478_1235 putative formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D T478_0923 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:nbv00860] D T478_0236 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D T478_1185 glutamyl-tRNAGlu reductase, N-terminal domain protein K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D T478_0465 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D T478_0441 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D T478_0578 putative glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D T478_0461 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D T478_0442 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D T478_0444 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D T478_0463 siroheme synthase domain protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D T478_0462 winged helix-turn-helix DNA-binding protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D T478_0506 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_1312 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_0091 cbiX; sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D T478_0054 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D T478_1462 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D T478_0056 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D T478_0092 cobalamin biosynthesis protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D T478_0093 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D T478_0053 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D T478_1488 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D T478_0089 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D T478_0090 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D T478_0759 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D T478_0088 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D T478_1308 CobQ/CobB/MinD/ParA nucleotide binding domain protein K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D T478_1307 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D T478_1304 MobA-like NTP transferase domain protein K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D T478_1306 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D T478_1309 hisC; histidinol-phosphate transaminase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D T478_0955 ferritin-like protein K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:nbv00130] D T478_0481 menaquinone biosynthesis decarboxylase, TIGR03701 family K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D T478_0672 bsdB; phenolic acid decarboxylase subunit B K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D T478_1062 methyltransferase, UbiE/COQ5 family K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D T478_0815 prenyltransferase, UbiA family K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D T478_0614 radical SAM domain protein, CofH subfamily K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D T478_0482 putative dehypoxanthine futalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D T478_0618 menaquinone biosynthesis protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:nbv00900] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0729 hydroxymethylglutaryl-coenzyme A synthase C-terminal K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D T478_1287 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D T478_0247 mvk; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D T478_0246 amino acid kinase family protein K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D T478_0049 PF04412 family protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D T478_0051 PF01989 family protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D T478_1315 decarboxylase, UbiD family K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D T478_0672 bsdB; phenolic acid decarboxylase subunit B K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D T478_0245 idi; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D T478_0244 polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D T478_1162 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D T478_0360 uppS; di-trans,poly-cis-decaprenylcistransferase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D T478_1212 transketolase, pyridine binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D T478_1213 putative ribulose-phosphate 3-epimerase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:nbv00523] D T478_0158 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D T478_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D T478_0156 WxcM-like protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D T478_0170 NDP-hexose 2,3-dehydratase K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] D T478_0168 oxidoreductase, NAD-binding domain protein K13327 spnN; dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase [EC:1.1.1.384] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics [PATH:nbv01055] D T478_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D T478_0170 NDP-hexose 2,3-dehydratase K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:nbv00261] D T478_0046 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D T478_1464 putative aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_0219 amino acid kinase family protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D T478_1310 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:nbv00521] D T478_1233 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D T478_0541 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D T478_1182 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D T478_0158 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D T478_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D T478_0156 WxcM-like protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:nbv00525] D T478_0158 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D T478_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:nbv00401] D T478_0470 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D T478_0787 anthranilate synthase component I, N-terminal domain protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D T478_0788 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D T478_0329 enoyl-(Acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D T478_0163 phosphopantetheine attachment domain protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D T478_0095 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:nbv00362] D T478_1357 dmpI; 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:nbv00627] D T478_0118 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D T478_0672 bsdB; phenolic acid decarboxylase subunit B K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:nbv00625] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D T478_1357 dmpI; 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D T478_1357 dmpI; 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:nbv00626] D T478_0521 putative alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D T478_0389 putative chlorophyll synthesis pathway protein BchC K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:nbv03020] D T478_0274 rpoB; DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D T478_0275 DNA-directed RNA polymerase subunit A' / DNA-directed RNA polymerase, subunit A'' multi-domain protein K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D T478_0402 rpoA; DNA-directed RNA polymerase, alpha subunit, N-terminal domain protein K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D T478_1467 RNA polymerase Rpb3/Rpb11 dimerization domain protein K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D T478_0494 rpoE; DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D T478_0273 RNA polymerase Rpb5, C-terminal domain protein K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D T478_0250 hypothetical protein K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D T478_0858 hypothetical protein K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D T478_0809 RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 C 03022 Basal transcription factors [PATH:nbv03022] D T478_0383 transcription factor TFIIB repeat protein K03124 TFIIB; transcription initiation factor TFIIB D T478_0583 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_1484 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_0599 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_1209 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_0996 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_1326 putative transcription factor E K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:nbv03010] D T478_0248 putative ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D T478_0712 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D T478_0257 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D T478_1116 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D T478_1144 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D T478_0703 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D T478_0399 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D T478_0860 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D T478_0332 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D T478_1145 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D T478_0258 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D T478_0704 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14 D T478_0293 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D T478_0709 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D T478_0714 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D T478_0289 ribosomal S3Ae family protein K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D T478_0706 ribosomal family S4e K02987 RP-S4e; small subunit ribosomal protein S4e D T478_0068 ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D T478_0386 ribosomal protein S8.e K02995 RP-S8e; small subunit ribosomal protein S8e D T478_0347 putative ribosomal S17 K02962 RP-S17e; small subunit ribosomal protein S17e D T478_1335 ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D T478_0796 ribosomal protein S26e K02976 RP-S26e; small subunit ribosomal protein S26e D T478_1305 ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D T478_1096 ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D T478_1231 ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D T478_1078 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D T478_1133 ribosomal protein L1p/L10e family K02863 RP-L1; large subunit ribosomal protein L1 D T478_0116 ribosomal protein L2, C-terminal domain protein K02886 RP-L2; large subunit ribosomal protein L2 D T478_0717 rpl3p; archaeal ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D T478_0705 putative 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D T478_0702 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D T478_1134 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D T478_1132 ribosomal protein L11, N-terminal domain / ribosomal protein L11, RNA-binding domain multi-domain protein K02867 RP-L11; large subunit ribosomal protein L11 D T478_1136 rpl12p; 50S ribosomal protein L12P K02869 RP-L12; large subunit ribosomal protein L12 D T478_0400 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D T478_0708 ribosomal protein L14p/L23e K02874 RP-L14; large subunit ribosomal protein L14 D T478_1114 ribosomal protein L18e/L15 K02876 RP-L15; large subunit ribosomal protein L15 D T478_1117 ribosomal L18p/L5e family protein K02881 RP-L18; large subunit ribosomal protein L18 D T478_0713 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D T478_0715 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D T478_0707 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D T478_0711 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D T478_1115 rpl30p; 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D T478_0716 rplD; ribosomal protein, L4/L1 family K02930 RP-L4e; large subunit ribosomal protein L4e D T478_1232 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D T478_0426 rplP; ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D T478_1022 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D T478_0401 putative ribosomal protein L18e/L15 K02883 RP-L18e; large subunit ribosomal protein L18e D T478_1127 ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D T478_1076 ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D T478_1230 ribosomal protein L24e-like protein K02896 RP-L24e; large subunit ribosomal protein L24e D T478_1147 ribosomal protein L7Ae K02908 RP-L30e; large subunit ribosomal protein L30e D T478_1125 ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D T478_1238 ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D T478_0407 putative ribosomal L37ae protein family K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D T478_1031 ribosomal L39 protein K02924 RP-L39e; large subunit ribosomal protein L39e D T478_0928 ribosomal L40e family protein K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D T478_1303 ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D T478_0579 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D T478_1502 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D T478_1149 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:nbv00970] D T478_1263 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D T478_1143 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D T478_0104 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D T478_0429 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D T478_1338 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D T478_0424 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D T478_0307 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D T478_0251 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_1234 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_0111 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_1188 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D T478_0216 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D T478_1285 tRNA-Met K14230 tRNA-Met; tRNA Met D T478_0992 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D T478_0419 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_1222 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_1107 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_0304 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D T478_0321 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D T478_1446 tRNA-Val K14237 tRNA-Val; tRNA Val D T478_0221 tRNA-Val K14237 tRNA-Val; tRNA Val D T478_0236 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D T478_0769 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D T478_0768 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D T478_0114 gatD; glutamyl-tRNA(Gln) amidotransferase, subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D T478_0113 gatE; glutamyl-tRNA(Gln) amidotransferase, subunit E K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D T478_1138 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D T478_0884 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_0773 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_0059 putative glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D T478_0799 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D T478_0290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D T478_0825 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D T478_0821 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D T478_0187 formyl transferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D T478_0324 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D T478_1139 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D T478_0924 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D T478_1010 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D T478_0875 arginine--tRNA ligase, N-terminal domain protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D T478_0546 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D T478_1224 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D T478_0314 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D T478_0315 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D T478_1463 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D T478_0313 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:nbv03060] D T478_1113 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D T478_0394 signal peptide-binding domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D T478_1119 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D T478_0385 SRP19 protein K03105 SRP19; signal recognition particle subunit SRP19 D T478_0673 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_1065 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_0675 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D T478_1247 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:nbv04122] D T478_1377 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D T478_0557 rhodanese-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D T478_0552 putative sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D T478_1298 ThiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D T478_0503 JAB1/Mov34/MPN/PAD-1 ubiquitin protease K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome [PATH:nbv03050] D T478_0719 putative proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1061 putative proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1439 psmB; proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D T478_0837 putative proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:nbv03018] D T478_1280 exosome complex exonuclease RRP4 N-terminal region K07573 CSL4; exosome complex component CSL4 D T478_0404 KH domain protein K03679 RRP4; exosome complex component RRP4 D T478_0406 3' exoribonuclease family, domain 1 K12589 RRP42; exosome complex component RRP42 D T478_0405 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D T478_0529 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D T478_0108 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK B B 09124 Replication and repair C 03030 DNA replication [PATH:nbv03030] D T478_1055 toprim domain protein K02316 dnaG; DNA primase [EC:2.7.7.101] D T478_1250 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D T478_1083 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D T478_0639 DNA polymerase family B, exonuclease domain protein K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D T478_0003 DNA polymerase II small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D T478_1496 polC; DNA polymerase II, large subunit DP2 K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D T478_1218 putative minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D T478_0062 putative DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D T478_0061 eukaryotic-type DNA primase, large subunit K18882 priL; DNA primase large subunit D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_1220 replication factor C C-terminal domain protein K04801 rfcS; replication factor C small subunit D T478_1178 ATPase, AAA family K04800 rfcL; replication factor C large subunit D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:nbv03410] D T478_1262 8-oxoguanine DNA glycosylase, N-terminal domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D T478_0047 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D T478_0879 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D T478_0008 base excision DNA repair protein, HhH-GPD family K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D T478_0561 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D T478_0060 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D T478_0904 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0292 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:nbv03420] D T478_0915 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D T478_0914 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D T478_0917 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D T478_0809 RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 D T478_0411 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:nbv03430] D T478_0904 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0292 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0303 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination [PATH:nbv03440] D T478_0904 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0292 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0098 RecA-like protein K04482 RAD51; DNA repair protein RAD51 C 03450 Non-homologous end-joining D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D T478_0493 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D T478_1130 rplX; ribosomal protein L24 K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:nbv02010] D T478_1040 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D T478_1037 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D T478_1039 ABC transporter, ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D T478_0238 periplasmic solute-binding family protein K09815 znuA; zinc transport system substrate-binding protein D T478_0241 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D T478_0240 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D T478_1427 MacB-like periplasmic core domain protein K09808 lolC_E; lipoprotein-releasing system permease protein D T478_1426 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:nbv03070] D T478_1113 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D T478_1119 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D T478_0394 signal peptide-binding domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D T478_0673 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_1065 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_0675 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:nbv02020] D T478_1332 HpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D T478_1351 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_1266 cytochrome B(C-terminal)/b6/PetD K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:nbv02024] D T478_0787 anthranilate synthase component I, N-terminal domain protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D T478_0788 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D T478_0889 autoinducer 2 aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] D T478_0439 HYR domain protein K20276 bapA; large repetitive protein D T478_0988 ABC transporter, substrate-binding protein, family 5 domain protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D T478_0654 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D T478_0653 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D T478_0883 oligopeptide/dipeptide transporter, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D T478_1113 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D T478_1119 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D T478_0394 signal peptide-binding domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:nbv04980] D T478_0759 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D T478_0627 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance [PATH:nbv01502] D T478_0220 glycosyltransferase family 28 C-terminal domain protein K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:nbv01000] C 01001 Protein kinases [BR:nbv01001] D T478_0224 Kae1-associated kinase Bud32 K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D T478_0367 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C 01009 Protein phosphatases and associated proteins [BR:nbv01009] D T478_0364 putative translation initiation factor aIF-2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D T478_0822 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D T478_0549 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:nbv01002] D T478_1273 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D T478_0688 putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D T478_0255 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D T478_0328 queuosine biosynthesis protein QueC-like protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0813 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0137 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D T478_0645 peptidase family M1 K13722 trf2_3; tricorn protease interacting factor F2/3 [EC:3.4.11.-] D T478_0937 oligoendopeptidase, pepF/M3 family K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D T478_1215 cytosol aminopeptidase family, catalytic domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D T478_0994 map; methionine aminopeptidase, type II K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D T478_1124 peptidase, S8/S53 family K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D T478_1247 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D T478_1358 peptidase, S54 family K07059 K07059; rhomboid family protein D T478_0719 putative proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1061 putative proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1439 psmB; proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D T478_0837 putative proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 01003 Glycosyltransferases [BR:nbv01003] D T478_0182 glycosyltransferase, group 2 family protein K23683 aglD; glycosyltransferase AglD [EC:2.4.1.-] D T478_1421 oligosaccharyl transferase STT3 subunit K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] D T478_0058 glycosyltransferase, group 2 family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] C 01005 Lipopolysaccharide biosynthesis proteins [BR:nbv01005] D T478_0196 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D T478_0177 SIS domain protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D T478_0199 putative phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D T478_0178 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:nbv01011] D T478_0055 putative glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D T478_0220 glycosyltransferase family 28 C-terminal domain protein K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01004 Lipid biosynthesis proteins [BR:nbv01004] D T478_0329 enoyl-(Acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D T478_0830 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:nbv01006] D T478_0244 polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D T478_1162 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D T478_0815 prenyltransferase, UbiA family K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D T478_0506 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_1312 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:nbv01007] D T478_1010 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D T478_0236 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D T478_1463 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D T478_0313 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D T478_0825 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D T478_0875 arginine--tRNA ligase, N-terminal domain protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D T478_0821 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D T478_0924 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D T478_0324 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D T478_1139 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D T478_0884 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_0773 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_1224 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D T478_0059 putative glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D T478_0290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D T478_0546 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D T478_0799 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D T478_1138 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D T478_0314 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D T478_0315 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D T478_0471 chorismate mutase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D T478_0205 alanine transaminase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D T478_1290 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D T478_1046 argD; transaminase, acetylornithine/succinylornithine family K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D T478_0726 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D T478_0441 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D T478_0578 putative glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D T478_1202 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0218 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D T478_0150 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102] D T478_0169 putative spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102] D T478_0191 putative spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:nbv03000] D T478_1407 putative modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D T478_1209 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_0996 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_1311 putative HTH-type transcriptional regulator LrpA K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D T478_1131 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D T478_0659 B12 binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D T478_0126 iron dependent repressor, metal binding/dimerization domain protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D T478_0564 transcriptional regulator MntR family protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D T478_0586 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D T478_0127 sugar-specific transcriptional regulator, TrmB family K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D T478_0237 NikR C-terminal nickel binding domain protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C 03021 Transcription machinery [BR:nbv03021] D T478_0809 RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 D T478_0383 transcription factor TFIIB repeat protein K03124 TFIIB; transcription initiation factor TFIIB D T478_0583 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_1484 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_0599 putative transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D T478_1209 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_0996 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D T478_1326 putative transcription factor E K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D T478_0493 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D T478_1130 rplX; ribosomal protein L24 K15172 SUPT5H; transcription elongation factor SPT5 D T478_0038 ATP-binding protein K24104 GPN; GPN-loop GTPase D T478_1146 KH domain protein, NusA family K02600 nusA; transcription termination/antitermination protein NusA D T478_0275 DNA-directed RNA polymerase subunit A' / DNA-directed RNA polymerase, subunit A'' multi-domain protein K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D T478_0274 rpoB; DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D T478_0402 rpoA; DNA-directed RNA polymerase, alpha subunit, N-terminal domain protein K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D T478_0494 rpoE; DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D T478_0273 RNA polymerase Rpb5, C-terminal domain protein K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D T478_1467 RNA polymerase Rpb3/Rpb11 dimerization domain protein K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D T478_0250 hypothetical protein K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D T478_0858 hypothetical protein K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D T478_1466 transcription factor S K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:nbv03019] D T478_0493 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D T478_1130 rplX; ribosomal protein L24 K15172 SUPT5H; transcription elongation factor SPT5 D T478_0115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D T478_0121 mRNA surveillance protein pelota K06965 PELO; protein pelota D T478_0783 prf1; peptide chain release factor 1, archaeal and eukaryotic forms K03265 ETF1; peptide chain release factor subunit 1 D T478_0861 tuf; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D T478_1280 exosome complex exonuclease RRP4 N-terminal region K07573 CSL4; exosome complex component CSL4 D T478_0404 KH domain protein K03679 RRP4; exosome complex component RRP4 D T478_0405 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D T478_0406 3' exoribonuclease family, domain 1 K12589 RRP42; exosome complex component RRP42 D T478_0529 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D T478_0108 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK C 03041 Spliceosome C 03011 Ribosome [BR:nbv03011] D T478_0289 ribosomal S3Ae family protein K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D T478_0706 ribosomal family S4e K02987 RP-S4e; small subunit ribosomal protein S4e D T478_0068 ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D T478_0386 ribosomal protein S8.e K02995 RP-S8e; small subunit ribosomal protein S8e D T478_0347 putative ribosomal S17 K02962 RP-S17e; small subunit ribosomal protein S17e D T478_1335 ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D T478_0796 ribosomal protein S26e K02976 RP-S26e; small subunit ribosomal protein S26e D T478_1305 ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D T478_1096 ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D T478_1231 ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D T478_1078 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D T478_0716 rplD; ribosomal protein, L4/L1 family K02930 RP-L4e; large subunit ribosomal protein L4e D T478_1232 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D T478_0426 rplP; ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D T478_1022 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D T478_0401 putative ribosomal protein L18e/L15 K02883 RP-L18e; large subunit ribosomal protein L18e D T478_1127 ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D T478_1076 ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D T478_1230 ribosomal protein L24e-like protein K02896 RP-L24e; large subunit ribosomal protein L24e D T478_1147 ribosomal protein L7Ae K02908 RP-L30e; large subunit ribosomal protein L30e D T478_1125 ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D T478_1238 ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D T478_0407 putative ribosomal L37ae protein family K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D T478_1031 ribosomal L39 protein K02924 RP-L39e; large subunit ribosomal protein L39e D T478_0928 ribosomal L40e family protein K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D T478_1303 ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D T478_0248 putative ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D T478_0712 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D T478_0257 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D T478_1116 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D T478_1144 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D T478_0703 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D T478_0399 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D T478_0860 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D T478_0332 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D T478_1145 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D T478_0258 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D T478_0704 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14 D T478_0293 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D T478_0709 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D T478_0714 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D T478_1133 ribosomal protein L1p/L10e family K02863 RP-L1; large subunit ribosomal protein L1 D T478_0116 ribosomal protein L2, C-terminal domain protein K02886 RP-L2; large subunit ribosomal protein L2 D T478_0717 rpl3p; archaeal ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D T478_0705 putative 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D T478_0702 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D T478_1134 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D T478_1132 ribosomal protein L11, N-terminal domain / ribosomal protein L11, RNA-binding domain multi-domain protein K02867 RP-L11; large subunit ribosomal protein L11 D T478_0400 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D T478_0708 ribosomal protein L14p/L23e K02874 RP-L14; large subunit ribosomal protein L14 D T478_1114 ribosomal protein L18e/L15 K02876 RP-L15; large subunit ribosomal protein L15 D T478_1117 ribosomal L18p/L5e family protein K02881 RP-L18; large subunit ribosomal protein L18 D T478_0713 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D T478_0715 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D T478_0707 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D T478_0711 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D T478_1115 rpl30p; 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D T478_1136 rpl12p; 50S ribosomal protein L12P K02869 RP-L12; large subunit ribosomal protein L12 D T478_1149 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D T478_0579 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D T478_1502 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:nbv03009] D T478_1082 snoRNA-binding domain protein K14564 NOP56; nucleolar protein 56 D T478_0086 nucleolar RNA-binding protein, Nop10p family K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D T478_1339 EMG1/NEP1 methyltransferase K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D T478_0368 KH domain protein K06961 KRR1; ribosomal RNA assembly protein D T478_0367 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D T478_1255 AAA domain protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D T478_0989 PF04034 domain protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D T478_1150 putative metal-binding domain in RNase L inhibitor, RLI K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D T478_0710 PF01868 domain protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D T478_1225 putative translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D T478_0403 rRNA metabolism protein, SBDS family K14574 SDO1; ribosome maturation protein SDO1 D T478_0115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D T478_1084 flpA; fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein D T478_1232 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D T478_1146 KH domain protein, NusA family K02600 nusA; transcription termination/antitermination protein NusA D T478_1073 ribosomal RNA adenine dimethylase family protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D T478_1085 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D T478_0946 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D T478_1153 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D T478_0529 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D T478_1323 hflX; GTP-binding protein HflX K03665 hflX; GTPase D T478_0350 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D T478_1254 translation-associated GTPase K06942 ychF; ribosome-binding ATPase D T478_0621 translation-associated GTPase K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:nbv03016] D T478_0710 PF01868 domain protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D T478_1337 putative ribonuclease P protein component 4 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D T478_0014 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D T478_0330 tRNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D T478_1226 archease protein family K24956 ZBTB8OS; protein archease D T478_0861 tuf; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D T478_0236 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D T478_0546 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D T478_0924 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D T478_1139 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D T478_0821 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D T478_0875 arginine--tRNA ligase, N-terminal domain protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D T478_1138 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D T478_0059 putative glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D T478_0799 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D T478_0290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D T478_0825 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D T478_0324 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D T478_1224 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D T478_0314 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D T478_0315 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D T478_1463 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D T478_0313 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D T478_1128 D-aminoacyl-tRNA deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D T478_0782 scavenger mRNA decapping enzyme K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D T478_0850 scavenger mRNA decapping enzyme K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D T478_1028 MiaB-like tRNA modifying enzyme, archaeal-type K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D T478_1086 N2,N2-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D T478_1152 ribosomal protein L11 methyltransferase-like protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D T478_0841 ribosomal protein L11 methyltransferase-like protein K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D T478_0225 twy1; wyosine biosynthesis protein TYW1 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D T478_1109 putative rRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D T478_0513 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D T478_1097 hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D T478_0224 Kae1-associated kinase Bud32 K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D T478_1252 putative universal archaeal protein Kae1 K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D T478_1009 radical SAM enzyme/protein acetyltransferase, ELP3 family K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D T478_0350 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D T478_0348 THUMP domain protein K06963 TAN1; tRNA acetyltransferase TAN1 D T478_0021 putative 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D T478_0977 rnpB; Archaeal RNase P K01978 rnpB; M1 RNA D T478_0009 cca; tRNA adenylyltransferase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D T478_0428 endA; tRNA-intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D T478_0867 endA; tRNA-intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D T478_0010 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D T478_1010 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D T478_0884 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_0773 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D T478_0615 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D T478_1324 tRNA ribose 2'-O-methyltransferase aTrm56 K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D T478_0552 putative sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D T478_1056 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D T478_0036 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D T478_0278 putative queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D T478_0842 4Fe-4S single cluster domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D T478_1256 putative tRNA-guanine(15) transglycosylase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D T478_1284 PF08489 domain protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] C 03012 Translation factors [BR:nbv03012] D T478_0366 putative translation initiation factor eIF-1A K03236 EIF1A; translation initiation factor 1A D T478_0982 translation initiation factor Sui1 K03113 EIF1; translation initiation factor 1 D T478_0087 putative translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 D T478_0364 putative translation initiation factor aIF-2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D T478_1424 eif2g; translation initiation factor 2, gamma subunit K03242 EIF2S3; translation initiation factor 2 subunit 3 D T478_0391 eif5A; translation elongation factor IF5A K03263 EIF5A; translation initiation factor 5A D T478_1227 infB; translation initiation factor aIF-2 K03243 EIF5B; translation initiation factor 5B D T478_1225 putative translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D T478_0861 tuf; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D T478_0508 translation elongation factor aEF-1 beta K03232 EEF1B; elongation factor 1-beta D T478_0598 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D T478_1283 dph2; diphthamide biosynthesis enzyme Dph2 K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D T478_0392 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D T478_0783 prf1; peptide chain release factor 1, archaeal and eukaryotic forms K03265 ETF1; peptide chain release factor subunit 1 D T478_1071 putative methylase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D T478_0511 pth2; aminoacyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:nbv03110] D T478_0108 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D T478_1301 ths; thermosome subunit K22447 cct; archaeal chaperonin D T478_1495 thsB; thermosome subunit beta K22447 cct; archaeal chaperonin D T478_0110 putative chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D T478_0094 DnaJ domain protein K05516 cbpA; curved DNA-binding protein D T478_0107 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D T478_1481 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D T478_1120 pfdA; prefoldin, alpha subunit K04797 pfdA; prefoldin alpha subunit D T478_0409 prefoldin, beta subunit K04798 pfdB; prefoldin beta subunit D T478_1124 peptidase, S8/S53 family K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D T478_1453 peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D T478_1485 peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D T478_1441 peptidyl-prolyl cis-trans isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D T478_0818 ppiC; peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D T478_1228 trxA; thioredoxin K03671 TXN; thioredoxin D T478_1245 trxA; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:nbv04131] D T478_1229 ndk; nucleoside pyrophosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D T478_0115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D T478_0098 RecA-like protein K04482 RAD51; DNA repair protein RAD51 D T478_0861 tuf; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:nbv04121] D T478_0928 ribosomal L40e family protein K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D T478_1096 ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D T478_1078 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D T478_0098 RecA-like protein K04482 RAD51; DNA repair protein RAD51 C 03051 Proteasome [BR:nbv03051] D T478_0719 putative proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1061 putative proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D T478_1439 psmB; proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D T478_0837 putative proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03032 DNA replication proteins [BR:nbv03032] D T478_1250 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D T478_1407 putative modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D T478_0086 nucleolar RNA-binding protein, Nop10p family K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D T478_0411 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D T478_1068 hypothetical protein K03163 TOP1; DNA topoisomerase I [EC:5.6.2.1] D T478_1055 toprim domain protein K02316 dnaG; DNA primase [EC:2.7.7.101] D T478_0001 orc1/cdc6 family replication initiation protein K10725 cdc6A; archaeal cell division control protein 6 D T478_1218 putative minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D T478_0062 putative DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D T478_0061 eukaryotic-type DNA primase, large subunit K18882 priL; DNA primase large subunit D T478_1219 GINS complex protein K09723 ginS; DNA replication factor GINS D T478_1492 hypothetical protein K09723 ginS; DNA replication factor GINS D T478_1083 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D T478_0639 DNA polymerase family B, exonuclease domain protein K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D T478_1496 polC; DNA polymerase II, large subunit DP2 K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D T478_0003 DNA polymerase II small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D T478_1178 ATPase, AAA family K04800 rfcL; replication factor C large subunit D T478_1220 replication factor C C-terminal domain protein K04801 rfcS; replication factor C small subunit D T478_0303 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D T478_0371 putative type II DNA topoisomerase VI subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D T478_0369 putative type 2 DNA topoisomerase 6 subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] C 03036 Chromosome and associated proteins [BR:nbv03036] D T478_1407 putative modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D T478_0718 putative RNA methyltransferase K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D T478_0345 hfoA; archaeal histone A2 K24450 hmf; DNA-binding protein D T478_0094 DnaJ domain protein K05516 cbpA; curved DNA-binding protein D T478_0542 RecF/RecN/SMC N-terminal domain protein K03529 smc; chromosome segregation protein D T478_0388 ScpA/B-like protein K05896 scpA; segregation and condensation protein A D T478_0387 putative segregation and condensation protein B K06024 scpB; segregation and condensation protein B D T478_1029 tubulin/FtsZ family, GTPase domain protein K03531 ftsZ; cell division protein FtsZ D T478_0495 ParA/MinD ATPase-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:nbv03400] D T478_1126 DNA-binding domain, methylated-DNA-[protein]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D T478_0069 FAD binding domain of DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D T478_0879 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D T478_1262 8-oxoguanine DNA glycosylase, N-terminal domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D T478_0047 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D T478_1465 pcn; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D T478_0864 ATP-dependent DNA ligase domain protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D T478_0809 RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 D T478_0411 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D T478_0098 RecA-like protein K04482 RAD51; DNA repair protein RAD51 D T478_0468 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D T478_0078 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D T478_0561 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D T478_0008 base excision DNA repair protein, HhH-GPD family K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D T478_0060 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D T478_0904 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0292 DHHA1 domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D T478_0915 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D T478_0914 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D T478_0917 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D T478_0303 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D T478_1019 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D T478_1017 calcineurin-like phosphoesterase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D T478_1077 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D T478_1016 PF01935 domain protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D T478_1015 NurA domain protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] D T478_1217 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D T478_0535 ImpB/MucB/SamB family protein K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D T478_0083 type III restriction enzyme, res subunit K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D T478_0101 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D T478_1341 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D T478_0534 PF04894 family protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:nbv03029] D T478_1266 cytochrome B(C-terminal)/b6/PetD K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D T478_0710 PF01868 domain protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D T478_1463 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D T478_1139 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D T478_0059 putative glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D T478_0875 arginine--tRNA ligase, N-terminal domain protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D T478_0769 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D T478_0768 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D T478_0108 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D T478_0107 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D T478_0110 putative chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D T478_0431 hypothetical protein K14741 MT4; metallothionein 4 D T478_0495 ParA/MinD ATPase-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D T478_0506 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D T478_1312 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:nbv02000] D T478_1040 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D T478_1037 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D T478_1039 ABC transporter, ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D T478_0988 ABC transporter, substrate-binding protein, family 5 domain protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D T478_0654 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D T478_0653 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D T478_0883 oligopeptide/dipeptide transporter, C-terminal domain protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D T478_0533 oligopeptide ABC transporter, oligopeptide-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D T478_0238 periplasmic solute-binding family protein K09815 znuA; zinc transport system substrate-binding protein D T478_0241 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D T478_0240 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D T478_1427 MacB-like periplasmic core domain protein K09808 lolC_E; lipoprotein-releasing system permease protein D T478_1426 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D T478_0438 daunorubicin resistance ABC transporter membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D T478_0103 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein D T478_0437 daunorubicin resistance ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D T478_0102 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D T478_0382 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D T478_0489 MIP family channel protein K09866 AQP4; aquaporin-4 D T478_0960 MIP family channel protein K06188 aqpZ; aquaporin Z D T478_1350 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family D T478_1378 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family D T478_0967 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog D T478_0017 transporter, small conductance mechanosensitive ion channel MscS family protein K05802 mscK; potassium-dependent mechanosensitive channel D T478_0228 CorA-like protein K03284 corA; magnesium transporter D T478_0732 membrane protein, PF01595 family K03699 tlyC; magnesium and cobalt exporter, CNNM family D T478_0262 membrane protein, putative K07238 TC.ZIP; zinc transporter, ZIP family D T478_1002 K+-dependent Na+/Ca+ exchanger family protein K07301 yrbG; cation:H+ antiporter D T478_1483 transporter, CPA2 family K03316 nhaP; Na+:H+ antiporter D T478_0416 transporter, CPA2 family K26735 KEA4_5_6; K+:H+ antiporter D T478_1007 transporter, CPA2 family K26730 napA; Na+:H+ antiporter D T478_0570 FTR1 family protein K07243 FTR; high-affinity iron transporter D T478_0638 sugar efflux transporter for intercellular exchange K15383 K15383; MtN3 and saliva related transmembrane protein D T478_0499 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D T478_0683 cytochrome C biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D T478_0723 putative cytochrome C-type biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D T478_0963 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D T478_1364 copper resistance protein D K14166 ycnJ; copper transport protein C 02044 Secretion system [BR:nbv02044] D T478_0640 cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12] D T478_1113 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D T478_0394 signal peptide-binding domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D T478_1119 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D T478_0385 SRP19 protein K03105 SRP19; signal recognition particle subunit SRP19 D T478_0673 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_1065 MttA family protein K03116 tatA; sec-independent protein translocase protein TatA D T478_0675 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:nbv02042] D T478_0732 membrane protein, PF01595 family K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system C 02035 Bacterial motility proteins C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:nbv04812] D T478_1029 tubulin/FtsZ family, GTPase domain protein K03531 ftsZ; cell division protein FtsZ C 04147 Exosome [BR:nbv04147] D T478_0249 eno; enolase, N-terminal domain / enolase, C-terminal TIM barrel domain multi-domain protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D T478_0450 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D T478_0861 tuf; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D T478_0598 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D T478_0108 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D T478_0829 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D T478_1277 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D T478_1096 ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D T478_0115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D T478_0782 scavenger mRNA decapping enzyme K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D T478_0850 scavenger mRNA decapping enzyme K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D T478_1345 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0739 thiolase, C-terminal domain protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D T478_0822 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D T478_1112 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] D T478_0377 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D T478_1189 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D T478_1041 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D T478_1493 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D T478_0461 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D T478_0326 phhB; 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D T478_1025 pdxB; 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D T478_0637 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:nbv02048] D T478_0303 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D T478_1064 DNA methylase family protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D T478_1407 putative modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D T478_1029 tubulin/FtsZ family, GTPase domain protein K03531 ftsZ; cell division protein FtsZ D T478_0236 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D T478_0410 PIN domain protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:nbv01504] D T478_0512 hypothetical protein K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:nbv00536] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:nbv03100] D T478_1263 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D T478_1143 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D T478_0104 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D T478_0429 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D T478_1338 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D T478_0424 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D T478_0307 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D T478_0251 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_1234 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_0111 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D T478_1188 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D T478_0216 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D T478_1285 tRNA-Met K14230 tRNA-Met; tRNA Met D T478_0992 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D T478_0419 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_1222 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_1107 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D T478_0304 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D T478_0321 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D T478_1446 tRNA-Val K14237 tRNA-Val; tRNA Val D T478_0221 tRNA-Val K14237 tRNA-Val; tRNA Val D T478_0579 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D T478_1502 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D T478_1149 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D T478_0977 rnpB; Archaeal RNase P K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D T478_0911 luciferase-like monooxygenase K14728 K14728; phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase [EC:1.2.-.-] D T478_1159 TENA/THI-4 family protein K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D T478_0207 npdG; NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D T478_0515 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D T478_0834 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D T478_0488 SCO1/SenC K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D T478_0940 redoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D T478_1173 redoxin K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25] D T478_1205 putative ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D T478_1183 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D T478_1200 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D T478_1348 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D T478_0959 low molecular weight phosphotyrosine protein phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D T478_0128 radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D T478_1052 dph5; diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D T478_0159 O-methyltransferase, TylF family K05303 K05303; O-methyltransferase [EC:2.1.1.-] D T478_0173 carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D T478_0632 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D T478_0804 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D T478_0267 phosphoribosylaminoimidazole carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D T478_0797 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D T478_0346 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D T478_0082 nuclease-like protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D T478_0166 PF11959 domain protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D T478_1346 hydrolase, carbon-nitrogen family K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D T478_0969 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D T478_0840 YjeF family C-terminal domain protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136] D T478_0271 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D T478_0269 TIGR00299 family protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D T478_0253 YjeF family N-terminal domain protein K17759 NAXE; NAD(P)H-hydrate epimerase [EC:5.1.99.6] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D T478_0449 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D T478_0286 ATPase, AAA family K04748 norQ; nitric oxide reductase NorQ protein D T478_0486 flavodoxin K03839 fldA; flavodoxin I D T478_1267 Rieske [2Fe-2S] domain protein K15878 K15878; rieske iron-sulfur protein C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D T478_0039 membrane protein, PF03706 family K07027 K07027; glycosyltransferase 2 family protein D T478_0184 membrane protein, PF03706 family K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others D T478_0776 DoxX family protein K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D T478_0538 putative DNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D T478_1197 putative DNA/RNA-binding protein AlbA K03622 ssh10b; archaea-specific DNA-binding protein D T478_0811 putative DNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D T478_0580 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D T478_1237 LSM domain protein K04796 RUXX; small nuclear ribonucleoprotein D T478_0097 LSM domain protein K04796 RUXX; small nuclear ribonucleoprotein C 99974 Translation D T478_1074 PF04919 family protein K07572 K07572; putative nucleotide binding protein D T478_1261 beta-Casp domain protein K07577 K07577; putative mRNA 3-end processing factor D T478_0916 RNA-metabolizing metallo-beta-lactamase K07577 K07577; putative mRNA 3-end processing factor D T478_0509 putative Zn-ribbon RNA-binding protein K07580 K07580; Zn-ribbon RNA-binding protein D T478_0288 RNA-binding protein K07581 K07581; RNA-binding protein C 99975 Protein processing D T478_0630 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein D T478_1321 PUA domain protein K07398 K07398; conserved protein with predicted RNA binding PUA domain C 99976 Replication and repair D T478_0252 translin family protein K07477 K07477; translin D T478_1347 hypothetical protein K07479 yrdD; putative DNA topoisomerase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D T478_0976 universal stress family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D T478_0951 phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family C 99978 Cell growth D T478_0192 cytidylyltransferase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF C 99993 Cell motility C 99995 Signaling proteins D T478_1334 double-stranded DNA-binding domain protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D T478_0122 divalent cation tolerance protein, CutA1 family K03926 cutA; periplasmic divalent cation tolerance protein B B 09194 Poorly characterized C 99996 General function prediction only D T478_0563 type II/IV secretion system protein K06865 K06865; ATPase D T478_0997 putative methionine--tRNA ligase, beta subunit K06878 K06878; tRNA-binding protein D T478_0445 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D T478_0446 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D T478_0983 Sjogren'S syndrome/scleroderma autoantigen 1 K07143 K07143; UPF0148 protein D T478_0361 PF04123 domain protein K08975 K08975; putative membrane protein D T478_0986 membrane protein, PF09843 family K08979 K08979; putative membrane protein C 99997 Function unknown D T478_0540 PAC2 family protein K06869 K06869; uncharacterized protein D T478_1005 putative TIGR00161 family protein K06869 K06869; uncharacterized protein D T478_1388 HD domain protein K06885 K06885; uncharacterized protein D T478_0523 PF03190 family protein K06888 K06888; uncharacterized protein D T478_0619 CoA-binding domain protein K06929 K06929; uncharacterized protein D T478_1140 zinc-or iron-chelating domain protein K06940 K06940; uncharacterized protein D T478_0460 HD domain protein K06950 K06950; uncharacterized protein D T478_0898 putative phosphoesterase K06953 K06953; uncharacterized protein D T478_0912 pyridoxamine 5'-phosphate oxidase K07005 K07005; uncharacterized protein D T478_1012 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D T478_1437 KH/beta-lactamase domain protein K07041 K07041; uncharacterized protein D T478_1344 PF01796 domain protein K07068 K07068; uncharacterized protein D T478_0738 hypothetical protein K07068 K07068; uncharacterized protein D T478_0957 PF05982 domain protein K07086 K07086; uncharacterized protein D T478_0870 sulfite exporter TauE/SafE K07090 K07090; uncharacterized protein D T478_0143 phosphodiesterase family protein K07095 K07095; uncharacterized protein D T478_0810 DNA-binding helix-turn-helix protein K07108 K07108; uncharacterized protein D T478_0041 KR domain protein K07124 K07124; uncharacterized protein D T478_1423 rRNA processing protein, FCF1 family K07158 K07158; uncharacterized protein D T478_0283 PAC2 family protein K07159 K07159; uncharacterized protein D T478_0566 hypothetical protein K09005 K09005; uncharacterized protein D T478_0063 PF03699 family protein K09118 K09118; uncharacterized protein D T478_0365 PF04242 family protein K09148 K09148; uncharacterized protein D T478_1438 PF04472 family protein K09152 K09152; uncharacterized protein D T478_0232 PF03685 family protein K09721 K09721; uncharacterized protein D T478_0105 PF04007 family protein K09726 K09726; uncharacterized protein D T478_0694 PF04027 domain protein K09738 K09738; uncharacterized protein D T478_1092 PF03745 domain protein K09763 K09763; uncharacterized protein D T478_0873 PF04402 family protein K09807 K09807; uncharacterized protein D T478_0952 TIGR00153 family protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024