+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Nocardioides sp. JS614

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D Noca_3281 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D Noca_3233 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D Noca_1351 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C Noca_1919 GTP-binding protein Era K03595 era; GTPase C Noca_3449 small GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C Noca_3054 zinc finger, DksA/TraR C4-type K06204 dksA; RNA polymerase-binding transcription factor C Noca_3752 putative suppressor protein DnaK K06204 dksA; RNA polymerase-binding transcription factor C Noca_4875 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C Noca_3192 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C Noca_2418 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C Noca_0695 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D Noca_3856 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Noca_2443 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Noca_3870 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Noca_3284 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Noca_1905 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Noca_4695 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Noca_3071 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Noca_3860 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Noca_2480 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D Noca_4020 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Noca_3237 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Noca_2480 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Noca_3753 23S rRNA m(5)U-747 methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D Noca_2497 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Noca_3052 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C Noca_3662 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C Noca_0794 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C Noca_3257 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C Noca_2319 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] B rRNA processing factors C Noca_3281 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Noca_3452 RNAse G K08300 rne; ribonuclease E [EC:3.1.26.12] C Noca_2408 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C Noca_4601 ATP-dependent RNA helicase CsdA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C Noca_1919 GTP-binding protein Era K03595 era; GTPase C Noca_1699 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C Noca_2503 small GTP-binding protein K03977 engA; GTPase C Noca_3449 small GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C Noca_3837 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C Noca_1753 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C Noca_2392 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Noca_3189 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C Noca_3193 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP C Noca_1693 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein C Noca_1821 iojap-like protein K09710 ybeB; ribosome-associated protein C Noca_1913 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor C Noca_1080 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C Noca_3282 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025