+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Nymphaea colorata (blue-petal water lily)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        116259962 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        116259964 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        116247186 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        116260338 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        116256239 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        116251661 DNA-directed RNA polymerase II subunit 4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        116261453 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        116263753 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        116257448 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        116249125 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116249699 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116258058 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116248077 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        116253615 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        116247841 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        116260030 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        116247215 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        116257001 DNA-directed RNA polymerase V subunit 1 isoform X1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        116247673 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        116250124 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        116253509 uncharacterized protein LOC116253509 isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        116255163 uncharacterized protein LOC116255163	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        116246390 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        116245978 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        116260735 plant-specific TFIIB-related protein 1 isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        116244794 LOW QUALITY PROTEIN: TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116249910 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116252975 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116257022 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        116261764 transcription initiation factor TFIID subunit 2 isoform X5	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        116265768 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        116253720 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        116257598 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        116267277 transcription initiation factor TFIID subunit 7 isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        116247843 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        116257607 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        116259101 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        116251389 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        116251111 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        116254568 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        116255318 transcription initiation factor TFIID subunit 13 isoform X1	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        116265952 uncharacterized protein LOC116265952	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        116256151 uncharacterized protein LOC116256151	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        116267429 uncharacterized protein LOC116267429	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        116267511 uncharacterized protein LOC116267511	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        116259080 transcription initiation factor IIF subunit alpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        116249280 uncharacterized protein LOC116249280	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        116255673 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        116253843 general transcription factor IIH subunit 2 isoform X1	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        116250962 general transcription and DNA repair factor IIH subunit TFB4 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        116256146 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        116260820 general transcription and DNA repair factor IIH helicase subunit XPB1-like	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        116264874 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        116261694 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        116252790 cyclin-dependent kinase D-2-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        116249816 uncharacterized protein LOC116249816	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        116257482 cyclin-H1-1 isoform X2	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        116246018 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        116266215 mediator of RNA polymerase II transcription subunit 11 isoform X1	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        116268279 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        116246374 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        116263410 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        116264950 mediator of RNA polymerase II transcription subunit 22a-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        116256710 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        116252287 mediator of RNA polymerase II transcription subunit 7a-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        116262410 mediator of RNA polymerase II transcription subunit 10b-like isoform X1	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        116247283 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        116265341 mediator of RNA polymerase II transcription subunit 31 isoform X1	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        116246468 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        116262236 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        116249684 cyclin-C1-1-like	K15161 CCNC; cyclin-C 
E        116265782 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        116262992 mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        116249350 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        116250008 mediator of RNA polymerase II transcription subunit 27-like	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        116250642 mediator of RNA polymerase II transcription subunit 27 isoform X1	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        116254489 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        116255178 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        116264063 mediator of RNA polymerase II transcription subunit 33A-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        116255821 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        116247605 uncharacterized protein LOC116247605 isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        116259019 transcriptional adapter ADA2-like isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        116261764 transcription initiation factor TFIID subunit 2 isoform X5	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        116265768 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        116253720 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        116257598 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        116267277 transcription initiation factor TFIID subunit 7 isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        116259101 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        116251389 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        116254568 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        116263778 SAGA-associated factor 11	K11363 SGF11; SAGA-associated factor 11 
E        116250699 SAGA-associated factor 29 homolog A-like isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        116249123 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        116260132 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        116251450 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        116252799 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        116254201 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
E        116255519 uncharacterized protein LOC116255519	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        116265918 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        116263374 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        116249149 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        116257400 SWI/SNF complex subunit SWI3A isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        116260462 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        116261818 SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        116250186 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        116256520 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        116263374 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        116259853 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        116249016 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        116253904 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        116263318 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        116264557 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        116256406 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        116258341 transcription elongation factor SPT6 homolog isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        116255329 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        116257030 uncharacterized protein LOC116257030 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        116263854 uncharacterized protein LOC116263854	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        116260415 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        116266255 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        116245803 uncharacterized protein LOC116245803 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        116264100 LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        116248889 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116252750 serine/threonine-protein phosphatase PP1-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116254042 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116254132 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116254342 serine/threonine-protein phosphatase PP1 isozyme 2-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116265593 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116266752 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        116247253 uncharacterized protein LOC116247253 isoform X1	K06100 SYMPK; symplekin 
E        116267565 uncharacterized protein LOC116267565	K06100 SYMPK; symplekin 
E        116253812 uncharacterized protein LOC116253812	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        116260303 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        116265176 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        116249911 uncharacterized protein LOC116249911 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        116258068 uncharacterized protein LOC116258068	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        116262091 uncharacterized protein LOC116262091 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        116246634 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        116260834 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        116253322 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        116258646 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        116258921 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        116254965 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        116247809 uncharacterized protein LOC116247809 isoform X1	K15186 EAF; ELL-associated factor 
E        116248518 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116248843 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116258734 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        116258915 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        116266939 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        116248518 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116248843 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116258734 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        116258915 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        116266939 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        116257492 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        116264475 la-related protein 6A-like isoform X1	K15191 LARP7; La-related protein 7 
E        116267518 la-related protein 6B-like isoform X1	K15191 LARP7; La-related protein 7 
E        116248518 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116248843 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        116258734 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        116258915 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        116266939 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        116251482 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        116265713 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        116246104 uncharacterized protein LOC116246104	K21752 DRAP1; Dr1-associated corepressor 
E        116258381 uncharacterized protein LOC116258381 isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        116261309 uncharacterized protein LOC116261309 isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        116262523 uncharacterized protein LOC116262523	K21752 DRAP1; Dr1-associated corepressor 
E        116249783 uncharacterized protein LOC116249783 isoform X1	K15193 SPTY2D1; protein SPT2 
E        116253197 uncharacterized protein LOC116253197	K15193 SPTY2D1; protein SPT2 
E        116252587 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        116256014 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        116246175 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        116257436 RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        116245289 uncharacterized protein LOC116245289	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        116254569 uncharacterized protein LOC116254569	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        116267187 uncharacterized protein LOC116267187	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        116254647 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        116256287 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        116252705 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        116247912 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        116254590 uncharacterized protein LOC116254590 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        116255560 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        116259492 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        116266559 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
E        116253087 RNA-directed DNA methylation 4 isoform X2	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        116254734 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        116247183 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        116250007 uncharacterized protein LOC116250007	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol III specific subunits
E        116265665 uncharacterized protein LOC116265665	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        116259158 uncharacterized protein LOC116259158 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        116265800 uncharacterized protein LOC116265800	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        116264465 uncharacterized protein LOC116264465	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        116246322 uncharacterized protein LOC116246322 isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        116246324 uncharacterized protein LOC116246324	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        116255407 uncharacterized protein LOC116255407 isoform X1	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        116263241 uncharacterized protein LOC116263241	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        116249125 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116249699 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116258058 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116248077 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        116253615 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        116247841 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        116260030 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        116266953 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        116244794 LOW QUALITY PROTEIN: TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116249910 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116252975 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116254344 plant-specific TFIIB-related protein PTF2 isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        116260478 transcription factor IIIB 60 kDa subunit-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        116263074 transcription factor TFIIIB component B''	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        116260035 uncharacterized protein LOC116260035 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        116246208 uncharacterized protein LOC116246208 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        116257371 uncharacterized protein LOC116257371 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        116250801 uncharacterized protein LOC116250801 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        116254226 uncharacterized protein LOC116254226	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        116250801 uncharacterized protein LOC116250801 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        116257371 uncharacterized protein LOC116257371 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        116253080 uncharacterized protein LOC116253080	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        116251019 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        116253623 uncharacterized protein LOC116253623	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        116250007 uncharacterized protein LOC116250007	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol I specific subunits
E        116248746 uncharacterized protein LOC116248746	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        116259373 DNA-directed RNA polymerase I subunit RPA12-like	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        116249125 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116249699 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116258058 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        116248077 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        116253615 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        116247841 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        116260030 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        116244794 LOW QUALITY PROTEIN: TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116249910 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        116252975 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        116265179 high mobility group B protein 6-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        116256794 uncharacterized protein LOC116256794	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        116250627 upstream activation factor subunit spp27-like isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        116264557 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        116256406 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        116262210 ISWI chromatin-remodeling complex ATPase CHR11-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        126409306 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409326 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409396 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409431 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409465 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409546 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409625 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409663 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        126409797 LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        67273276 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        67273221 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        126409267 DNA-directed RNA polymerase subunit beta''	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409273 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409380 DNA-directed RNA polymerase subunit beta''-like	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409385 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409407 DNA-directed RNA polymerase subunit beta''	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409410 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        126409457 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        67273219 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        67273220 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        116253109 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        116246050 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        116246398 RNA polymerase sigma factor sigC-like	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        116245978 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        116260735 plant-specific TFIIB-related protein 1 isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        116265952 uncharacterized protein LOC116265952	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 17, 2025