+D GENES KO
#
KEGG Orthology (KO) - Nitrospira defluvii
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:nde00010]
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NIDE0356 putative Glucose-6-phosphate isomerase (modular protein) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE3182 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE2980 fbaB; Fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D NIDE2031 fbpV; Fructose-1,6-bisphosphatase, class V K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D NIDE1105 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NIDE1107 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NIDE1106 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NIDE0478 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NIDE4112 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NIDE2807 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE4286 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE1634 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D NIDE3852 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3953 pdhA; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, alpha subunit (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3853 pdhB; Pyruvate dehydrogenase E1 component, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3952 pdhB; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3854 putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE3951 pdhC; Dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE4251 adhC; Alcohol dehydrogenase, NADP-dependent K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3866 putative Acyl-CoA synthetase (NDP forming) K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D NIDE3181 putative Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:nde00020]
D NIDE2451 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NIDE0835 aclA; ATP citrate lyase, alpha subunit K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8]
D NIDE0834 aclB; ATP-citrate lyase, beta subunit K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8]
D NIDE0836 acnA; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NIDE0837 idh; Isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE0841 sucD; Succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NIDE0840 sucC; Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NIDE0310 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NIDE2517 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NIDE2527 sdhE; Succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NIDE2454 fumC; Fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE1205 pycA; Pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D NIDE1204 pycB; Pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D NIDE3852 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3953 pdhA; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, alpha subunit (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3853 pdhB; Pyruvate dehydrogenase E1 component, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3952 pdhB; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3854 putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE3951 pdhC; Dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:nde00030]
D NIDE0356 putative Glucose-6-phosphate isomerase (modular protein) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NIDE2203 zwf2; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE0468 zwf1; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE0355 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D NIDE2204 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NIDE0397 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NIDE2536 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D NIDE0493 talC; Transaldolase, putative Fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NIDE0353 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D NIDE3515 xfp; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D NIDE1710 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D NIDE0315 rbsK; Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D NIDE1711 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE0781 prsA; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NIDE3654 gntK; Gluconate kinase (fragment) K00851 idnK; gluconokinase [EC:2.7.1.12]
D NIDE0496 ttuD; putative Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NIDE2980 fbaB; Fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D NIDE2031 fbpV; Fructose-1,6-bisphosphatase, class V K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE3182 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:nde00040]
D NIDE2887 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4145 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE3045 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NIDE0397 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:nde00051]
D NIDE2984 manC_pmi; bifunctional Mannose-1-phosphate guanylyltransferase/Mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE3821 putative Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE3388 putative Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE2329 putative Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE2211 putative Nucleotidyl transferase, possible Glucose-1-phosphate thymidylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE3012 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D NIDE3011 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D NIDE4204 putative Mannosyl-3-phosphoglycerate phosphatase K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE3182 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE2980 fbaB; Fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D NIDE2031 fbpV; Fructose-1,6-bisphosphatase, class V K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D NIDE1105 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:nde00052]
D NIDE3181 putative Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D NIDE3393 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D NIDE3718 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE3176 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2997 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2883 putative dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE3045 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE3182 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism [PATH:nde00053]
D NIDE2887 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4145 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4172 lpsL; UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:nde00500]
D NIDE3045 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NIDE2890 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D NIDE1796 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D NIDE2906 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D NIDE3768 putative 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NIDE3464 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NIDE1289 glgP; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D NIDE3903 Alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D NIDE1254 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D NIDE3904 Glycosyl transferase, group 1 K13057 treT; trehalose synthase [EC:2.4.1.245]
D NIDE0144 otsA1; Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D NIDE0145 otsB; Trehalose phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D NIDE1892 otsA2; Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NIDE0356 putative Glucose-6-phosphate isomerase (modular protein) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:nde00520]
D NIDE0246 nagZ; Beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NIDE2921 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NIDE2735 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D NIDE2922 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NIDE0386 anmK; Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D NIDE3389 putative Phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D NIDE0979 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NIDE0763 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NIDE2377 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NIDE2831 UDP-glucose/GDP-mannose dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D NIDE2998 wecB; UDP-N-acetylglucosamine 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D NIDE3000 neuA; N-acylneuraminate cytidylyltransferase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D NIDE2888 NAD-dependent epimerase/dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE3045 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NIDE2887 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4145 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE3393 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D NIDE3718 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE3176 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2997 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2883 putative dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE4172 lpsL; UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D NIDE0356 putative Glucose-6-phosphate isomerase (modular protein) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NIDE3388 putative Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE2329 putative Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE2211 putative Nucleotidyl transferase, possible Glucose-1-phosphate thymidylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE3821 putative Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE2984 manC_pmi; bifunctional Mannose-1-phosphate guanylyltransferase/Mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NIDE3012 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D NIDE2732 putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D NIDE2865 putative Aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D NIDE3011 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D NIDE2890 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D NIDE2326 putative UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D NIDE2875 rfbE; CDP-tyvelose epimerase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D NIDE1796 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:nde00620]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE3852 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3953 pdhA; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, alpha subunit (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3853 pdhB; Pyruvate dehydrogenase E1 component, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3952 pdhB; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3854 putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE3951 pdhC; Dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE4251 adhC; Alcohol dehydrogenase, NADP-dependent K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NIDE3516 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NIDE2807 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE4286 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE2583 accA; Acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NIDE2468 accB; Acetyl CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NIDE2469 accC; Acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NIDE1577 accD; Acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NIDE1245 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D NIDE3866 putative Acyl-CoA synthetase (NDP forming) K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D NIDE0597 putative Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D NIDE3370 putative Hydrolase, beta-lactamase-like K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NIDE4281 putative Hydrolase with N-terminal DNA-binding domain K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NIDE2442 maeA; Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NIDE3846 maeA2; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NIDE1205 pycA; Pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D NIDE1204 pycB; Pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE2454 fumC; Fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NIDE1634 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE1002 leuA; 2-Isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D NIDE4110 2-isopropylmalate/homocitrate synthase-family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:nde00630]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE2451 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NIDE0836 acnA; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3120 scpAb; Methylmalonyl-CoA mutase (C-terminal fragment) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D NIDE3118 scpAa; Methylmalonyl-CoA mutase (N-terminal fragment) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D NIDE2639 ghrB; Glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D NIDE4284 putative Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D NIDE1160 Aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NIDE3384 gltB; Glutamate synthase, alpha subunit K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE0168 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NIDE0312 gcvP; Glycine dehydrogenase, glycine cleavage system P protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D NIDE0320 gcvT; Aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE2728 gcvH; Glycine cleavage system, H protein K02437 gcvH; glycine cleavage system H protein
D NIDE0496 ttuD; putative Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NIDE1932 fdsA; Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D NIDE1931 fdsB; Formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
C 00640 Propanoate metabolism [PATH:nde00640]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3866 putative Acyl-CoA synthetase (NDP forming) K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D NIDE3516 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE2583 accA; Acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NIDE2468 accB; Acetyl CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NIDE2469 accC; Acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NIDE1577 accD; Acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NIDE3120 scpAb; Methylmalonyl-CoA mutase (C-terminal fragment) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D NIDE3118 scpAa; Methylmalonyl-CoA mutase (N-terminal fragment) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D NIDE0840 sucC; Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NIDE0841 sucD; Succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NIDE3127 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D NIDE3125 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D NIDE3126 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:nde00650]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3117 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE0310 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NIDE2517 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NIDE2527 sdhE; Succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE3123 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D NIDE2332 putative Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0997 ilvI; Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0998 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:nde00660]
D NIDE2332 putative Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0997 ilvI; Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0998 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NIDE0840 sucC; Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NIDE0841 sucD; Succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NIDE4347 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NIDE4348 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NIDE1005 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:nde00562]
D NIDE3744 putative Acid phosphatase K21302 sapM; phosphatidylinositol-3-phosphatase [EC:3.1.3.64]
D NIDE0161 suhB; Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NIDE4351 putative Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NIDE0736 putative sugar nucleotidyltransferase and phosphatidyltransferase (bifunctional enzyme) K23992 K23992; 1L-myo-inositol 1-phosphate cytidylyltransferase / CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.7.74 2.7.8.34]
D NIDE1105 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:nde00190]
D NIDE0236 nuoA; NADH-quinone oxidoreductase, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D NIDE0615 nuoA; NADH-quinone oxidoreductase, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D NIDE0614 nuoB; NADH-quinone oxidoreductase, subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D NIDE0235 nuoB; NADH-quinone oxidoreductase, subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D NIDE0234 nuoC; NADH-quinone oxidoreductase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D NIDE0233 nuoD; NADH-quinone oxidoreductase, subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D NIDE0613 nuoCD; NADH-quinone oxidoreductase, subunits C and D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D NIDE0612 nuoE; NADH-quinone oxidoreductase, subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D NIDE1930 fdsG; Formate dehydrogenase, gamma subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D NIDE0611 nuoF; NADH-quinone oxidoreductase, subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D NIDE3560 nuoF; NADH-quinone oxidoreductase, subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D NIDE0608 nuoH; NADH-quinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D NIDE0607 nuoI; NADH-quinone oxidoreductase, subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D NIDE0231 nuoI; NADH-quinone oxidoreductase, subunit I (modular protein) K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D NIDE0606 nuoJ; NADH-quinone oxidoreductase, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D NIDE0230 nuoJ; NADH-quinone oxidoreductase, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D NIDE0229 nuoK; NADH-quinone oxidoreductase, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D NIDE0605 nuoK; NADH-quinone oxidoreductase, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D NIDE0604 nuoL; NADH-quinone oxidoreductase, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NIDE0228 nuoL; NADH-quinone oxidoreductase, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NIDE1769 putative NADH-quinone oxidoreductase, subunit L (fragment) K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NIDE4386 putative NADH-quinone oxidoreductase, subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NIDE0603 nuoM; NADH-quinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NIDE0226 nuoM2; NADH-quinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NIDE0227 nuoM1; NADH-quinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NIDE4387 putative NADH-quinone oxidoreductase, subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NIDE0602 nuoN; NADH-quinone oxidoreductase, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D NIDE0225 nuoN; NADH-quinone oxidoreductase, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D NIDE0026 ndh; respiratory NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D NIDE0310 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NIDE2517 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NIDE2527 sdhE; Succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NIDE0899 putative Quinol-cytochrome c reductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE3889 qcrB; Quinol-cytochrome c reductase, fused cytochrome b/c subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE3890 putative Quinol-cytochrome c reductase, iron-sulfur subunit (Rieske iron-sulfur protein) K03886 qcrA; quinol---cytochrome c reductase iron-sulfur subunit, bacillus type [EC:7.1.1.8]
D NIDE3883 putative Sulfite:cytochrome c oxidoreductase, subunit B K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D NIDE2610 cydA; Cytochrome bd oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE0896 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE0901 membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE3296 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE3303 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE2609 cydB; Cytochrome bd oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NIDE0370 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NIDE0372 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NIDE0371 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NIDE0369 putative ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NIDE0373 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NIDE3734 atpB; ATP synthase F0, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NIDE3732 atpF; ATP synthase F0, subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NIDE3733 atpE; ATP synthase F0, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NIDE3643 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D NIDE3408 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D NIDE3880 conserved protein of unknown function, putative Polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:nde00710]
D NIDE1106 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NIDE1107 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NIDE2980 fbaB; Fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE2536 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D NIDE0353 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D NIDE1105 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NIDE0397 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NIDE0493 talC; Transaldolase, putative Fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NIDE1634 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:nde00720]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE1634 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D NIDE1205 pycA; Pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D NIDE1204 pycB; Pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE2454 fumC; Fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NIDE0310 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NIDE2517 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NIDE2527 sdhE; Succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NIDE0841 sucD; Succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NIDE0840 sucC; Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE0837 idh; Isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NIDE0836 acnA; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NIDE0835 aclA; ATP citrate lyase, alpha subunit K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8]
D NIDE0834 aclB; ATP-citrate lyase, beta subunit K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8]
D NIDE2583 accA; Acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NIDE2468 accB; Acetyl CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NIDE2469 accC; Acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NIDE1577 accD; Acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NIDE3118 scpAa; Methylmalonyl-CoA mutase (N-terminal fragment) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D NIDE3120 scpAb; Methylmalonyl-CoA mutase (C-terminal fragment) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D NIDE3713 fhs; Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D NIDE0810 folD; bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NIDE0811 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D NIDE3516 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:nde00680]
D NIDE1932 fdsA; Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D NIDE1931 fdsB; Formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D NIDE0168 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NIDE1160 Aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NIDE0496 ttuD; putative Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE2980 fbaB; Fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D NIDE2031 fbpV; Fructose-1,6-bisphosphatase, class V K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE3182 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NIDE3516 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D NIDE0478 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NIDE4112 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NIDE3443 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NIDE4070 thrH; Homoserine kinase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D NIDE0732 comD; Sulfopyruvate decarboxylase, alpha subunit K06034 comD; sulfopyruvate decarboxylase subunit alpha [EC:4.1.1.79]
D NIDE0733 comE; Sulfopyruvate decarboxylase, beta subunit K13039 comE; sulfopyruvate decarboxylase subunit beta [EC:4.1.1.79]
C 00910 Nitrogen metabolism [PATH:nde00910]
D NIDE1382 narK; Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D NIDE3237 nxrA1; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3255 nxrA2; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3236 nxrB1; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3256 nxrB2; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE1367 nirA; Ferredoxin-nitrite reductase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D NIDE3339 putative Cytochrome c-type protein K15876 nrfH; cytochrome c nitrite reductase small subunit
D NIDE2534 putative Copper-containing nitrite reductase (NO-forming) K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D NIDE4252 nirK; Copper-containing nitrite reductase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D NIDE0440 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE3383 gltD; Glutamate synthase, beta subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D NIDE3384 gltB; Glutamate synthase, alpha subunit K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D NIDE1365 cynS; Cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D NIDE1449 cah; Carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
D NIDE3172 cam2; Carbonic anhydrase K01743 E4.2.1.1; carbonic anhydrase [EC:4.2.1.1]
D NIDE2799 cam; Carbonic anhydrase K01743 E4.2.1.1; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:nde00920]
D NIDE1623 cysP; Sulfate/thiosulfate ABC transporter, periplasmic binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NIDE1622 cysT; Sulfate/thiosulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NIDE1621 cysW; Sulfate/thiosulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D NIDE1620 cysA; Sulfate/thiosulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NIDE2693 putative Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D NIDE0411 cysNC; Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme) K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D NIDE0410 cysD; Sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NIDE3008 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D NIDE3769 cysC2; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D NIDE0408 cysH; Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D NIDE0407 putative Sulfite reductase, contains SirA-like domain (modular protein) K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D NIDE3925 sqr; Sulfide:quinone oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D NIDE3220 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NIDE2398 putative Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE2975 cysE; Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE3328 putative Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE1821 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:nde00061]
D NIDE2583 accA; Acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NIDE2468 accB; Acetyl CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NIDE2469 accC; Acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NIDE1577 accD; Acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NIDE2645 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE0798 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE3331 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE0796 fabD; Malonyl-CoA-(acyl-carrier-protein) transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NIDE0795 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NIDE0854 fabH; 3-ketoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NIDE1991 conserved exported protein of unknown function K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NIDE0799 fabF2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0587 fabF; Beta-ketoacyl ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE2644 fabF3; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0049 fabG2; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE1909 fabG3; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE0797 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3580 fabG5; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE2473 fabG4; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3041 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NIDE1599 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NIDE3105 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3128 putative 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:nde00071]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3102 paaF; putative Enoyl-CoA hydratase K13767 fadB; enoyl-CoA hydratase [EC:4.2.1.17]
D NIDE3105 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3128 putative 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE1185 putative fused MFS-type Permease and bifunctional Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase/Acyl-[acyl-carrier-protein] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis [PATH:nde00100]
D NIDE1238 Squalene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:nde00561]
D NIDE0496 ttuD; putative Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NIDE4251 adhC; Alcohol dehydrogenase, NADP-dependent K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NIDE0794 plsX; Fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NIDE2559 plsY; conserved membrane protein, putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NIDE0425 putative Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:nde00564]
D NIDE0531 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D NIDE4040 putative Fe-S oxidoreductase K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D NIDE2559 plsY; conserved membrane protein, putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NIDE0425 putative Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NIDE1185 putative fused MFS-type Permease and bifunctional Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase/Acyl-[acyl-carrier-protein] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D NIDE0511 pmtA; Phosphatidylethanolamine N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D NIDE1512 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D NIDE2611 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NIDE1001 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NIDE1000 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D NIDE2558 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D NIDE0775 pgsA; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:nde01040]
D NIDE1497 scdA; Stearoyl-CoA 9-desaturase (fragment) K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE1213 desC; Fatty acid desaturase, type 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE2480 Acyl-CoA desaturase (fragment) K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE0349 tesA; TAP complex multifunctional esterase (modular protein) K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D NIDE2201 conserved protein of unknown function, putative Lipolytic enzyme K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:nde00230]
D NIDE0319 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D NIDE1711 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE0781 prsA; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NIDE1393 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NIDE2573 purD; Phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D NIDE1225 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NIDE1392 purL; Phosphoribosylformylglycinamidine synthase, PurL subunit (FGAM synthase II) K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D NIDE1390 purS; Phosphoribosylformylglycinamidine synthase, PurS subunit (FGAM component) K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D NIDE1391 purQ; Phosphoribosylformylglycinamidine synthase, PurQ subunit (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D NIDE1224 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D NIDE3964 purK; Phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D NIDE3965 purE; Phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D NIDE1388 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D NIDE1386 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NIDE2574 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NIDE1247 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NIDE4107 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NIDE4241 HAD-like hydrolase, putative purine nucleotidase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D NIDE0768 conserved protein of unknown function, DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NIDE2738 hpt; Hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D NIDE1421 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NIDE2730 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NIDE1872 rdgB; Nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D NIDE1422 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NIDE2462 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D NIDE1937 nrdJ; Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NIDE3263 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NIDE1410 putative Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D NIDE2415 putative Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D NIDE1116 putative Adenylate cyclase with CHASE2 sensor domain K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D NIDE1957 protein of unknown function, contains Adenylate/guanylate cyclase and FHA domain K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D NIDE3548 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NIDE3722 conserved protein of unknown function, putative Metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D NIDE1332 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NIDE1220 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NIDE0814 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D NIDE0411 cysNC; Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme) K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D NIDE3008 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D NIDE3769 cysC2; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D NIDE0410 cysD; Sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NIDE0054 yedX; Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 00240 Pyrimidine metabolism [PATH:nde00240]
D NIDE2545 carB; Carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NIDE2542 carA; Carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NIDE2539 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NIDE2540 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D NIDE1091 pyrD; Dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D NIDE0218 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D NIDE4234 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D NIDE2759 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D NIDE2730 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NIDE1220 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NIDE3956 maf; Septum formation protein Maf-like K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D NIDE2555 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D NIDE0424 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D NIDE4107 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NIDE2538 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NIDE3722 conserved protein of unknown function, putative Metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D NIDE3575 dcd; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D NIDE1937 nrdJ; Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NIDE2924 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:nde00250]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE3739 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NIDE4324 iaaA; Isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NIDE2995 putative Asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE3010 asnB4; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE2699 asnB; Asparagine synthetase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE2868 asnB; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE1160 Aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NIDE1244 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NIDE0485 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NIDE0486 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NIDE3548 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NIDE1386 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NIDE2539 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NIDE3383 gltD; Glutamate synthase, beta subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D NIDE0440 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D NIDE2475 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE2545 carB; Carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NIDE2542 carA; Carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NIDE1391 purQ; Phosphoribosylformylglycinamidine synthase, PurQ subunit (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D NIDE2921 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NIDE1393 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:nde00260]
D NIDE4111 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NIDE1007 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NIDE4114 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NIDE4070 thrH; Homoserine kinase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D NIDE1819 thrC1; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NIDE4113 thrC2; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NIDE2207 ltaE; Low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D NIDE0168 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NIDE1160 Aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NIDE0496 ttuD; putative Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NIDE0478 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NIDE4112 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NIDE3443 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NIDE3447 bioF; 8-amino-7-oxononanoate synthase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NIDE4184 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NIDE4183 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D NIDE0312 gcvP; Glycine dehydrogenase, glycine cleavage system P protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D NIDE0320 gcvT; Aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE2728 gcvH; Glycine cleavage system, H protein K02437 gcvH; glycine cleavage system H protein
D NIDE2611 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NIDE1001 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NIDE2047 trpA; Tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NIDE2046 trpB; Tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NIDE2154 dat; Diaminobutyrate-2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
C 00270 Cysteine and methionine metabolism [PATH:nde00270]
D NIDE2398 putative Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE2975 cysE; Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE3328 putative Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE1821 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D NIDE1868 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NIDE0846 metK; Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NIDE0862 putative Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D NIDE3354 putative S-methyl-5'-thioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D NIDE0768 conserved protein of unknown function, DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NIDE2731 mtnA; 5-methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D NIDE1881 rlp; Ribulose bisphosphate carboxylase-like protein (RuBisCO type IV-like protein) K25035 rlp; S-methyl-5-thioribulose 1-phosphate isomerase [EC:5.3.3.23]
D NIDE0845 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NIDE4111 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NIDE1007 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NIDE4114 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NIDE1240 conserved protein of unknown function, putative 4Fe-4S ferredoxin K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D NIDE1817 conserved protein of unknown function K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D NIDE1103 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE3737 putative Aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE3220 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NIDE3562 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NIDE3443 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:nde00280]
D NIDE1103 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE3737 putative Aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3120 scpAb; Methylmalonyl-CoA mutase (C-terminal fragment) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D NIDE3118 scpAa; Methylmalonyl-CoA mutase (N-terminal fragment) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D NIDE4257 garR; 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D NIDE4352 3-hydroxyacid dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D NIDE1138 putative 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D NIDE3121 pccB; Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D NIDE3122 putative Enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D NIDE3123 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:nde00290]
D NIDE4347 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NIDE4348 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NIDE1005 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D NIDE2332 putative Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0997 ilvI; Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0998 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NIDE0999 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NIDE3406 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NIDE1103 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE3737 putative Aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE1002 leuA; 2-Isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D NIDE4110 2-isopropylmalate/homocitrate synthase-family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:nde00300]
D NIDE4114 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NIDE4111 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NIDE1007 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NIDE0489 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NIDE0490 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D NIDE0483 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NIDE0596 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NIDE0503 yfdZ; Aminotransferase, probable Transaminase MtnE K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D NIDE0488 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D NIDE3823 putative Diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D NIDE0756 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NIDE0757 murF; UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:nde00310]
D NIDE4062 Aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3018 putative L-2-hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D NIDE3574 kamA; L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D NIDE4136 dat; D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:nde00220]
D NIDE0484 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D NIDE0485 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NIDE0486 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NIDE0529 putative Dimethylargininase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D NIDE1391 purQ; Phosphoribosylformylglycinamidine synthase, PurQ subunit (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE2545 carB; Carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NIDE2542 carA; Carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NIDE0440 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE2756 argJ; Arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D NIDE0299 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D NIDE2755 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D NIDE0483 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:nde00330]
D NIDE3973 pdaD; Arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D NIDE3972 speB; Agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D NIDE0529 putative Dimethylargininase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D NIDE0770 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D NIDE1654 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D NIDE2475 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NIDE1099 proB; Glutamat 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NIDE2819 proA; Gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NIDE2209 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE4136 dat; D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:nde00340]
D NIDE0980 hisG; ATP-phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D NIDE3442 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D NIDE0987 hisI; fused Phosphoribosyl-AMP cyclohydrolase and Phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D NIDE0985 hisA; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D NIDE0983 hisH; Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D NIDE0986 hisF; Imidazole glycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D NIDE0982 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NIDE0981 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D NIDE4164 putative Formimidoyltransferase-cyclodeaminase K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
C 00350 Tyrosine metabolism [PATH:nde00350]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NIDE3110 putative Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D NIDE3206 exported protein of unknown function, putative Tyrosinase K00422 E1.10.3.1; polyphenol oxidase [EC:1.10.3.1]
D NIDE0023 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00360 Phenylalanine metabolism [PATH:nde00360]
D NIDE3117 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NIDE0023 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NIDE4136 dat; D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00380 Tryptophan metabolism [PATH:nde00380]
D NIDE0784 conserved protein of unknown function, putative Peptidase K00463 IDO; indoleamine 2,3-dioxygenase [EC:1.13.11.52]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:nde00400]
D NIDE2969 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NIDE0421 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NIDE1353 aroB; 3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D NIDE2466 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D NIDE0446 aroE; Shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D NIDE0447 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D NIDE0423 aroA; 3-phosphoshikimate-1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D NIDE1426 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D NIDE2040 trpE; Anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NIDE2041 trpG; Anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NIDE0409 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D NIDE2042 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D NIDE2045 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D NIDE2043 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D NIDE2047 trpA; Tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NIDE2046 trpB; Tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NIDE0419 pheA; P-protein, bifunctional chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D NIDE0422 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:nde00410]
D NIDE2919 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D NIDE0501 panC; Pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:nde00430]
D NIDE1244 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NIDE3516 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:nde00440]
D NIDE2903 putative Phosphoenolpyruvate phosphomutase (modular protein) K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
D NIDE2902 ppd; Phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
D NIDE0734 phnW; 2-aminoethylphosphonate aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
C 00450 Selenocompound metabolism [PATH:nde00450]
D NIDE1868 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NIDE1127 trxB; Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D NIDE4034 putative Thioredoxin K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D NIDE0411 cysNC; Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme) K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D NIDE0410 cysD; Sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NIDE2927 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:nde00460]
D NIDE4324 iaaA; Isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NIDE0168 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:nde00470]
D NIDE2761 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NIDE4136 dat; D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D NIDE0764 ddlB; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE0474 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE1391 purQ; Phosphoribosylformylglycinamidine synthase, PurQ subunit (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D NIDE0759 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NIDE1440 putative Muconate cycloisomerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D NIDE0596 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NIDE0488 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:nde00480]
D NIDE1153 putative lactam utilization protein, UPF0271 family K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D NIDE0245 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NIDE4085 putative Peptidase M K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NIDE0837 idh; Isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NIDE2204 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NIDE2203 zwf2; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE0468 zwf1; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE1235 btuE; predicted Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:nde00540]
D NIDE3040 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NIDE0164 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NIDE2646 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NIDE3039 conserved protein of unknown function, DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NIDE3037 lpxB; Lipid-A-disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NIDE3032 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NIDE2557 kdsD; Arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NIDE2556 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NIDE2985 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NIDE2554 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NIDE3033 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NIDE1500 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NIDE4313 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D NIDE2553 rfaEa; D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D NIDE4317 rfaEb; D-beta-D-heptose 1-phosphate adenosyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D NIDE2328 putative Galactokinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D NIDE3425 hddA; D-glycero-D-manno-heptose 7-phosphate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D NIDE3423 putative D-glycero-D-manno-heptose 1-phosphate guanosyltransferase K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71]
D NIDE3030 putative Lipopolysaccharide heptosyltransferase II K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NIDE3031 rfaF_gmhB; Lipopolysaccharide heptosyltransferase II and D, D-heptose 1,7-bisphosphate phosphatase (modular protein) K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D NIDE3023 putative Lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D NIDE3291 putative Glycosyl transferase, family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:nde00542]
D NIDE3420 putative Phospho-N-acetylmuramoyl-pentapeptide-transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2404 putative Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (modular protein) K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:nde00541]
D NIDE3045 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NIDE3718 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE3176 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2997 putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2883 putative dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NIDE2887 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4145 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NIDE4172 lpsL; UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D NIDE3016 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NIDE3015 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE2870 putative dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE4043 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NIDE3014 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D NIDE4374 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D NIDE2890 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D NIDE2326 putative UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D NIDE2875 rfbE; CDP-tyvelose epimerase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D NIDE2984 manC_pmi; bifunctional Mannose-1-phosphate guanylyltransferase/Mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NIDE3821 putative Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D NIDE3012 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D NIDE3011 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D NIDE2732 putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D NIDE2865 putative Aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D NIDE2922 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NIDE2377 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NIDE2831 UDP-glucose/GDP-mannose dehydrogenase family protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:nde00550]
D NIDE0979 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NIDE0763 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NIDE0762 murC; UDP-N-acetylmuramate-L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NIDE0759 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NIDE0756 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NIDE0764 ddlB; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE0474 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE0757 murF; UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NIDE1513 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NIDE1080 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NIDE0758 mraY; Phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NIDE0761 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NIDE4322 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NIDE4030 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NIDE3591 putative Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NIDE1016 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NIDE0755 ftsI; Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NIDE0434 putative D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NIDE0773 putative Esterase, beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:nde00552]
D NIDE1080 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NIDE3420 putative Phospho-N-acetylmuramoyl-pentapeptide-transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2404 putative Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (modular protein) K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:nde00543]
D NIDE3420 putative Phospho-N-acetylmuramoyl-pentapeptide-transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2404 putative Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (modular protein) K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2398 putative Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE2975 cysE; Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NIDE3328 putative Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:nde00730]
D NIDE1063 thiC; Thiamine biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D NIDE1195 thiD; Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D NIDE4024 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NIDE1125 putative Thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NIDE0869 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NIDE3060 thiG; Thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D NIDE1062 putative Thiazole biosynthesis enzyme K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D NIDE3059 thiE2; Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D NIDE2470 thiE; Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D NIDE3047 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D NIDE1332 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NIDE1200 putative Thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:nde00740]
D NIDE1383 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NIDE1635 ribD; fused Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NIDE1384 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D NIDE1641 ribE; Riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D NIDE2740 ribF; Riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D NIDE2104 bluB; Cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D NIDE2667 putative Cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D NIDE0319 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:nde00750]
D NIDE0536 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D NIDE4117 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D NIDE1819 thrC1; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NIDE4113 thrC2; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:nde00760]
D NIDE3739 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NIDE1076 nadA; Quinolinate synthetase, subunit A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D NIDE1732 nadC; Nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D NIDE3777 pncB; Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D NIDE4107 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NIDE1098 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D NIDE1220 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NIDE1358 nadE; NAD(+) synthase (glutamine-hydrolyzing) K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D NIDE3776 pncA; Nicotine deamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D NIDE1737 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D NIDE2456 ppnK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D NIDE1201 sthA; Soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D NIDE2524 sthA; Soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:nde00770]
D NIDE2332 putative Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0997 ilvI; Acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NIDE0998 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NIDE0999 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NIDE3406 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NIDE0812 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D NIDE1738 putative 2-dehydropantoate 2-reductase (modular protein) K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D NIDE0501 panC; Pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D NIDE1730 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D NIDE2464 coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D NIDE1220 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NIDE2566 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D NIDE1128 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D NIDE1744 putative 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D NIDE1103 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE3737 putative Aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE2919 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:nde00780]
D NIDE1991 conserved exported protein of unknown function K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NIDE0799 fabF2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0587 fabF; Beta-ketoacyl ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE2644 fabF3; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0049 fabG2; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE1909 fabG3; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE0797 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3580 fabG5; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE2473 fabG4; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3041 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NIDE1599 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NIDE2550 bioA; Adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NIDE2471 bioD; Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D NIDE1095 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D NIDE1731 putative Biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:nde00785]
D NIDE0441 lipB; Lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D NIDE3950 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE3852 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3953 pdhA; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, alpha subunit (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D NIDE3853 pdhB; Pyruvate dehydrogenase E1 component, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3952 pdhB; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D NIDE3854 putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE3951 pdhC; Dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NIDE0312 gcvP; Glycine dehydrogenase, glycine cleavage system P protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D NIDE0320 gcvT; Aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NIDE2728 gcvH; Glycine cleavage system, H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:nde00790]
D NIDE3555 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D NIDE0502 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridinediphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D NIDE2736 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D NIDE1579 folC; Bifunctional protein FolC: Folylpolyglutamate synthase and Dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D NIDE1383 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NIDE3736 pabB; Aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D NIDE4038 putative 6-pyruvoyl-tetrahydropterin synthase (modular protein) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NIDE3556 pts; 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NIDE0156 phhB; 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NIDE0244 putative Radical-activating enzyme, radical SAM superfamily K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NIDE1249 queC; Queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NIDE0820 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (modular protein) K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NIDE1574 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D NIDE1571 moaC; Molybdopterin cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D NIDE1573 moaE; Molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D NIDE2773 moaB; Molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D NIDE3341 moeA; Molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D NIDE3156 putative Transcriptional regulator ModE K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D NIDE3292 putative Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:nde00670]
D NIDE3713 fhs; Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D NIDE0810 folD; bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NIDE0168 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NIDE1225 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NIDE2574 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NIDE4164 putative Formimidoyltransferase-cyclodeaminase K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D NIDE0395 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NIDE0320 gcvT; Aminomethyltransferase, glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NIDE1868 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NIDE0811 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:nde00860]
D NIDE4019 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NIDE2745 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D NIDE4293 hemL; Glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NIDE2741 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NIDE2744 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D NIDE4176 putative Uroporphyrinogen III synthase HemD K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D NIDE1215 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D NIDE1217 hemY; Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D NIDE1216 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D NIDE2743 hemD; Porphyrin biosynthesis protein HemD K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D NIDE2103 cobA_hemD; Uroporphyrinogen-III C-methyltransferase and Uroporphyrinogen-III synthase (modular protein) K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D NIDE2764 putative Precorrin-2 dehydrogenase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D NIDE0561 radical SAM superfamily protein, putative Coenzyme PQQ synthesis protein E K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D NIDE0206 protein of unknown function, CbiX domain K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D NIDE2091 cbiX; Sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D NIDE2098 cobI; Precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D NIDE2100 cobJ; Precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D NIDE2102 cobM; Precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D NIDE2099 cbiG; Cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D NIDE2095 cbiD; putative Cobalt-precorrin-6A synthase [deacetylating] K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D NIDE2097 cobL; Precorrin-6Y C(5,15)-methyltransferase (decarboxylating) K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D NIDE2096 cobH; Precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D NIDE2105 cobB; Cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D NIDE2670 cbiA; Cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D NIDE2666 cobO; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NIDE2669 btuR; Cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NIDE2659 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D NIDE2662 cbiB; Cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D NIDE2660 putative Adenosylcobinamide amidohydrolase K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D NIDE2665 cobU; Bifunctional adenosylcobalamin biosynthesis protein CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D NIDE2663 cobS; Cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D NIDE2664 cobT; Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D NIDE2661 cobD; Threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D NIDE2061 conserved protein of unknown function, contains FMN-binding split barrel K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D NIDE4379 conserved protein of unknown function, contains FMN-binding split barrel K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D NIDE3169 putative Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D NIDE1021 bfrB; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D NIDE1022 bfrA; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:nde00130]
D NIDE0906 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NIDE0564 ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D NIDE3258 wrbA; NAD(P)H:quinone oxidoreductase WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:nde00900]
D NIDE0869 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NIDE1511 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D NIDE2977 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D NIDE0780 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D NIDE2976 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D NIDE0870 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D NIDE0859 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE0701 ispA; Geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D NIDE3385 Polyprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NIDE1513 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:nde00909]
D NIDE1238 Squalene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
D NIDE0861 shc; Squalene-hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129]
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:nde00906]
D NIDE1520 crtB; Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:nde00907]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3123 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D NIDE2536 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:nde00523]
D NIDE3016 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NIDE3015 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE2870 putative dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE4043 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NIDE3014 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D NIDE4374 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D NIDE3015 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE2870 putative dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D NIDE2155 putative Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:nde00332]
D NIDE1099 proB; Glutamat 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NIDE2819 proA; Gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NIDE2209 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:nde00261]
D NIDE2156 conserved protein of unknown function, MbtH-like K05375 mbtH; MbtH protein
D NIDE0411 cysNC; Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme) K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D NIDE0410 cysD; Sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NIDE4111 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NIDE1007 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NIDE0489 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NIDE0490 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:nde00521]
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NIDE2083 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D NIDE2983 manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NIDE0161 suhB; Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NIDE4351 putative Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NIDE3016 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NIDE3015 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE2870 putative dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE4043 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NIDE3014 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D NIDE4374 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D NIDE0354 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:nde00525]
D NIDE3016 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NIDE3015 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NIDE2870 putative dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:nde00401]
D NIDE0422 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis [PATH:nde00405]
D NIDE2777 yddE; Uncharacterized isomerase K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D NIDE2040 trpE; Anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NIDE2041 trpG; Anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D NIDE0796 fabD; Malonyl-CoA-(acyl-carrier-protein) transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NIDE0049 fabG2; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE1909 fabG3; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE0797 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3580 fabG5; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE2473 fabG4; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE1599 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:nde00998]
D NIDE2645 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE0798 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE3331 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D NIDE2903 putative Phosphoenolpyruvate phosphomutase (modular protein) K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
D NIDE2902 ppd; Phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:nde00999]
D NIDE0846 metK; Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NIDE0446 aroE; Shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:nde00362]
D NIDE2599 putative Alpha/beta hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D NIDE3554 putative 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D NIDE0016 putative Glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D NIDE3559 fdx; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D NIDE4022 fdxB; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NIDE3102 paaF; putative Enoyl-CoA hydratase K13767 fadB; enoyl-CoA hydratase [EC:4.2.1.17]
D NIDE3117 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D NIDE1245 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation [PATH:nde00364]
D NIDE2255 putative Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:nde00361]
D NIDE2255 putative Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D NIDE0016 putative Glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:nde00623]
D NIDE0023 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NIDE0022 pchF; 4-cresol dehydrogenase (hydroxylating), flavoprotein subunit K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1]
D NIDE2255 putative Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:nde00622]
D NIDE0023 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NIDE0016 putative Glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation
D NIDE0827 forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE0971 porA; Pyruvate:ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE3874 vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D NIDE1465 forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0823 forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE0970 porB; Pyruvate:ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3873 vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE1464 porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D NIDE3875 vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0969 porC; Pyruvate:ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0824 forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D NIDE0968 porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:nde00643]
D NIDE3110 putative Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D NIDE0016 putative Glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:nde00930]
D NIDE3103 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
D NIDE1836 putative Steroid delta-isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:nde03020]
D NIDE1303 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NIDE1304 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NIDE1339 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NIDE2463 rpoZ; DNA-directed RNA polymerase, omega subunit (modular protein) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:nde03010]
D NIDE0426 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D NIDE2757 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NIDE1317 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NIDE1338 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NIDE1328 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NIDE0789 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NIDE1307 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NIDE1325 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NIDE2754 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NIDE1310 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NIDE1337 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NIDE1306 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NIDE1336 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NIDE1324 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NIDE4129 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NIDE3073 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NIDE1320 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NIDE1315 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NIDE4235 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NIDE4163 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NIDE1301 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NIDE1314 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NIDE1311 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NIDE1312 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NIDE1323 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NIDE1326 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NIDE1302 rplJL; Fused 50S ribosomal proteins L10 and L7/L12 (modular protein) K02935 RP-L7; large subunit ribosomal protein L7/L12
D NIDE0169 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NIDE1300 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NIDE2753 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NIDE1321 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NIDE1330 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NIDE1318 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NIDE1340 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NIDE1327 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NIDE3070 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NIDE0400 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NIDE1102 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NIDE1316 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NIDE1313 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NIDE1322 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NIDE0782 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NIDE1101 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NIDE2677 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NIDE1319 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NIDE1329 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NIDE0976 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NIDE1295 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NIDE0401 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NIDE_16S_1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NIDErRNA1386600D 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NIDE_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:nde00970]
D NIDEtRNA20 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA8 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA4 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA17 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA38 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA40 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA41 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NIDEtRNA31 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NIDEtRNA5 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D NIDEtRNA26 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NIDEtRNA25 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NIDEtRNA29 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NIDEtRNA27 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NIDEtRNA3 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA11 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA23 tRNA-His K14226 tRNA-His; tRNA His
D NIDEtRNA14 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NIDEtRNA45 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA1 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA32 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA22 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NIDEtRNA28 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NIDEtRNA19 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA7 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA43 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA37 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NIDEtRNA24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA9 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA16 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA35 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA39 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA2 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA36 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA12 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA6 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA34 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA13 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D NIDEtRNA10 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D NIDEtRNA42 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDEtRNA30 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDEtRNA44 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDE4019 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NIDE2918 gatA; Glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NIDE2915 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NIDE2920 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NIDE4016 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NIDE1707 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NIDE1425 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NIDE0751 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NIDE1631 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NIDE1632 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NIDE0403 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NIDE2193 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NIDE4105 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NIDE2927 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NIDE0395 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NIDE1733 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NIDE4238 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NIDE1077 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NIDE2053 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NIDE3290 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NIDE1509 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NIDE4397 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NIDE0398 pheS; Phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NIDE0399 pheT; Phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NIDE2725 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NIDE3366 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:nde03060]
D NIDE1331 secY; Preprotein translocase, membrane subunit SecY K03076 secY; preprotein translocase subunit SecY
D NIDE1298 secE; Preprotein translocase, subunit SecE K03073 secE; preprotein translocase subunit SecE
D NIDE1104 secG; Preprotein translocase, membrane subunit SecG K03075 secG; preprotein translocase subunit SecG
D NIDE3287 secD; Protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D NIDE3286 secF; Protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D NIDE3288 yajC; Preprotein translocase, subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NIDE0360 oxaA; Inner-membrane protein insertion factor OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NIDE0623 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE2722 secA; Protein translocase, subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE3074 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NIDE4087 ftsY; Cell division protein ftsY homolog K03110 ftsY; fused signal recognition particle receptor
D NIDE3273 tatA; Twin-arginine translocation protein TatA/E K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4074 putative Twin-arginine translocation protein TatA2 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4075 tatA3; Twin-arginine translocation protein TatA3 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE1681 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D NIDE3343 tatC; Twin-arginine targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D NIDE2552 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NIDE1078 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:nde04122]
D NIDE4024 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NIDE3220 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NIDE4165 putative Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NIDE2748 putative Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NIDE0368 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NIDE1573 moaE; Molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D NIDE1574 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D NIDE1572 moaD; Molybdopterin converting factor, small subunit K03636 moaD; sulfur-carrier protein
D NIDE1818 putative Molybdopterin converting factor, small subunit MoaD K03636 moaD; sulfur-carrier protein
D NIDE4045 conserved protein of unknown function, putative sulfur carrier ThiS K03636 moaD; sulfur-carrier protein
D NIDE3481 conserved protein of unknown function K03636 moaD; sulfur-carrier protein
D NIDE1816 moeB; Molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D NIDE1820 thiF; Adenylyltransferase ThiF K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D NIDE1571 moaC; Molybdopterin cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D NIDE2773 moaB; Molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D NIDE1125 putative Thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NIDE3061 thiS; Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D NIDE1822 putative Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D NIDE3395 putative Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:nde03050]
D NIDE3058 pan; Proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
D NIDE0955 Uncharacterized ATPase, AAA family K13527 mpa; proteasome-associated ATPase
D NIDE3055 psmA; Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE0959 putative Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE3056 psmB; Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D NIDE0958 putative Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:nde03018]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NIDE4127 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NIDE1472 rhlE; ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NIDE3184 rhlE; ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NIDE3642 deaD; DEAD-box RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NIDE4071 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NIDE0975 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NIDE3723 2',3'-cyclic-nucleotide 2'-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE1728 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D NIDE4028 hscA; Chaperone protein HscA (Hsc66) K04043 dnaK; molecular chaperone DnaK
D NIDE1378 groL; Chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NIDE3408 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D NIDE3880 conserved protein of unknown function, putative Polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:nde03030]
D NIDE2582 dnaE2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NIDE0278 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NIDE2926 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NIDE4236 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NIDE0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NIDE3441 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NIDE4231 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NIDE0989 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE1427 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NIDE3069 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NIDE0992 rnhC; Ribonuclease HIII (fragment) K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:nde03410]
D NIDE2460 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NIDE4162 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NIDE1448 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE1914 mutY; A/G-specific adenine glycosylase (fragment) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NIDE0691 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D NIDE0833 mutM; DNA-formamidopyrimidine glycosylase and DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NIDE0051 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D NIDE0317 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D NIDE0494 putative Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE1518 udgA; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE4335 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE3264 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:nde03420]
D NIDE4318 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NIDE3216 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
D NIDE0568 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
D NIDE3077 uvrB; Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
D NIDE0595 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D NIDE1291 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:nde03430]
D NIDE4122 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D NIDE1108 mutS2; MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D NIDE3356 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D NIDE1291 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NIDE3721 xseA; Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NIDE3720 xseB; Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NIDE3264 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE2582 dnaE2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NIDE0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NIDE0278 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NIDE4236 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NIDE2926 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:nde03440]
D NIDE3264 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE2909 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NIDE0280 recR; Recombination protein recR K06187 recR; recombination protein RecR
D NIDE1705 recA; Recombinase RecA K03553 recA; recombination protein RecA
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE0416 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NIDE0418 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NIDE1408 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NIDE2582 dnaE2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NIDE0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NIDE0278 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NIDE4236 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NIDE2926 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NIDE0238 putative Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:nde02010]
D NIDE1623 cysP; Sulfate/thiosulfate ABC transporter, periplasmic binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NIDE1622 cysT; Sulfate/thiosulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NIDE1621 cysW; Sulfate/thiosulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D NIDE1620 cysA; Sulfate/thiosulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NIDE3152 modA; Molybdate ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3158 modA3; Molybdenum ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3155 putative Molybdate ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3149 modB; Molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D NIDE3148 modC; Molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D NIDE1036 ABC transporter, periplasmic binding component, putative Fe3+ transport system K02012 afuA; iron(III) transport system substrate-binding protein
D NIDE1035 ABC transporter, permease component, putative Fe3+ transport system K02011 afuB; iron(III) transport system permease protein
D NIDE1034 ABC transporter, ATP-binding component, putative Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NIDE1801 potD; Polyamine ABC transporter, periplasmic-binding protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D NIDE1800 potC; Polyamine ABC transporter, permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D NIDE1799 potB; Polyamine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D NIDE1798 potA; Polyamine ABC transporter, ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NIDE3401 putative ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D NIDE3398 putative ABC-type sugar transport system, periplasmic binding component K10236 thuE; trehalose/maltose transport system substrate-binding protein
D NIDE3399 putative ABC-type sugar transport system, permease component K10237 thuF; trehalose/maltose transport system permease protein
D NIDE3400 putative ABC-type sugar transport system, permease component K10238 thuG; trehalose/maltose transport system permease protein
D NIDE0866 putative ABC transporter, auxiliary component, putative ATP-dependent toluene efflux transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1483 conserved protein of unknown function, putative auxiliary component of ATP-dependent toluene efflux transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE3827 putative Toluene tolerance-type auxiliary component of ABC-type transport system K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1452 protein of unknown function K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1505 conserved protein of unknown function, putative ABC transporter, periplasmic binding component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE0865 yrbD; ABC transporter, periplasmic binding component, putative ATP-dependent toluene efflux transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE3907 putative ABC-type transport system, periplasmic binding component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE1503 putative ABC transporter, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE0863 yrbE; ABC transporter, membrane component, putative ATP-dependent toluene efflux transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE3909 putative ABC-type transport system, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE0864 yrbF; ABC transporter, ATPase component, putative ATP-dependent toluene efflux transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE3908 putative ABC-type transport system, ATP binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE1504 putative ABC transporter, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE1207 putative Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2420 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2425 putative Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2430 pstS3; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2431 pstS4; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2419 putative Phosphate ABC transporter, permease protein with WD40-like region (modular protein) K02037 pstC; phosphate transport system permease protein
D NIDE2418 pstA; Phosphate ABC transporter, auxiliary and permease protein (modular protein) K02038 pstA; phosphate transport system permease protein
D NIDE2417 pstB; Phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NIDE0264 putative Leu/Ile/Val-binding protein, periplasmic-binding component of ABC transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein
D NIDE0507 ABC-2 type transporter, permease component, putative LPS export system K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE2892 putative O-antigen export system, permease protein RfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE3433 wzm; ABC-type polysaccharide transport system, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE0508 ABC-type transport system, ATPase component, putative LPS export system K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE2891 rfbB; O-antigen export system, ATP-binding protein RfbB (modular protein) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE3332 rfbB2; O-antigen export system, ATP-binding protein RfbB (modular protein) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE3432 wzt; ABC-type polysaccharide transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE2052 lolC; Lipoprotein-releasing system, transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D NIDE2051 lolD; Lipoprotein-releasing system, ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NIDE2642 putative Permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D NIDE2643 putative Permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D NIDE1343 lptB; ABC-type transport system, ATPase component, putative lipopolysaccharide transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NIDE3066 putative Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NIDE3067 ftsE; Cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NIDE3036 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NIDE3743 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NIDE3457 hlyB; Type I secretion system ATPase HlyB K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NIDE2153 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D NIDE1743 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:nde03070]
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE3456 putative Type I secretion membrane fusion protein HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D NIDE3457 hlyB; Type I secretion system ATPase HlyB K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NIDE2830 putative General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D NIDE0685 putative General secretion pathway protein G (modular Protein) K02456 gspG; general secretion pathway protein G
D NIDE2817 gspG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE2828 gspG2; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE2829 gspG3; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE3287 secD; Protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D NIDE3286 secF; Protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D NIDE1298 secE; Preprotein translocase, subunit SecE K03073 secE; preprotein translocase subunit SecE
D NIDE1104 secG; Preprotein translocase, membrane subunit SecG K03075 secG; preprotein translocase subunit SecG
D NIDE1331 secY; Preprotein translocase, membrane subunit SecY K03076 secY; preprotein translocase subunit SecY
D NIDE3288 yajC; Preprotein translocase, subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NIDE0360 oxaA; Inner-membrane protein insertion factor OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NIDE0623 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE2722 secA; Protein translocase, subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE4087 ftsY; Cell division protein ftsY homolog K03110 ftsY; fused signal recognition particle receptor
D NIDE3074 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NIDE3273 tatA; Twin-arginine translocation protein TatA/E K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4074 putative Twin-arginine translocation protein TatA2 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4075 tatA3; Twin-arginine translocation protein TatA3 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE1681 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D NIDE3343 tatC; Twin-arginine targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D NIDE1987 conserved protein of unknown function, Rhs element Vgr protein family K11904 vgrG; type VI secretion system secreted protein VgrG
D NIDE1979 conserved protein of unknown function, COG3157 K11903 hcp; type VI secretion system secreted protein Hcp
D NIDE1970 conserved protein of unknown function, COG3521 K11906 vasD; type VI secretion system protein VasD
D NIDE1973 conserved membrane protein of unknown function, IcmF-related K11891 impL; type VI secretion system protein ImpL
D NIDE1972 conserved protein of unknown function, COG3455 K11892 impK; type VI secretion system protein ImpK
D NIDE1985 clpV1; Type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:nde02020]
D NIDE0857 putative Phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NIDE2412 Signal transduction response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NIDE2426 phoB; Phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NIDE0858 putative Phosphate regulon transcriptional regulatory protein phoB K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D NIDE2437 putative Phosphate regulon transcriptional regulatory protein PhoB K07776 regX3; two-component system, OmpR family, response regulator RegX3
D NIDE1207 putative Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2420 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2425 putative Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2430 pstS3; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2431 pstS4; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE0303 degP; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0681 degP2; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE1429 putative Serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2561 degP3; Serine protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2979 degQ; Protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE3344 degP; Protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE3529 mdtA; Multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D NIDE3528 mdtB; Multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump
D NIDE3527 mdtC; Multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump
D NIDE2339 fliC; Flagellin, class B K02406 fliC; flagellin
D NIDE2309 fliA; Flagellar-specific RNA polymerase sigma 28 factor K02405 fliA; RNA polymerase sigma factor FliA
D NIDE2356 motA; Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D NIDE0001 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NIDE3941 putative Sensor histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D NIDE1763 Response regulator, CheY like K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D NIDE2442 maeA; Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NIDE3846 maeA2; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NIDE3237 nxrA1; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3255 nxrA2; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3236 nxrB1; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3256 nxrB2; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE0807 putative Histidine kinase, containing PAS domain S-box K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D NIDE1489 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE1040 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE3091 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE2321 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
D NIDE0166 putative Histidine kinase with N-terminal NAD-binding region K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D NIDE2117 cpaB; Pilus assembly protein CpaB (modular protein) K02279 cpaB; pilus assembly protein CpaB
D NIDE2116 putative Pilus assembly protein CpaC K02280 cpaC; pilus assembly protein CpaC
D NIDE2112 putative Pilus assembly ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D NIDE2111 cpaF; Pilus assembly ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D NIDE2110 tadB; Pilus assembly protein TadB K12510 tadB; tight adherence protein B
D NIDE2109 tadC; Pilus assembly protein TadC K12511 tadC; tight adherence protein C
D NIDE1362 putative (Protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D NIDE0405 protein of unknown function, putative transcriptional regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D NIDE0947 putative transmembrane signal transduction receptor and sigma-54 dependent response regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE1222 Sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NIDE1223 Sigma-54 dependent DNA-binding response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D NIDE3939 Sensory sigma-54 dependent transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D NIDE3942 Sigma-54 dependent response regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D NIDE1256 Sigma-54 dependent DNA-binding response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1585 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1047 Sigma-54 dependent DNA-binding response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1773 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE4271 Sigma-54 dependent response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3283 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3245 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3520 Sigma-54 dependent response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE0778 putative Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D NIDE0779 pilR; Transcriptional regulatory protein pilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D NIDE1344 rpoN; RNA polymerase, sigma-54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D NIDE3438 pilA; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE3439 pilA2; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE2265 putative Sensor histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NIDE2267 Sigma-54 dependent DNA-binding response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE2217 Sigma-54 dependent transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE2347 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2365 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2353 putative Methyl-accepting chemotaxis protein (MCP) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2363 cheM; Globin-coupled methyl-accepting chemotaxis protein (modular protein) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2359 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2354 cheW; Chemotaxis signal transducer CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2362 cheW; Chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2656 putative Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2350 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2361 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2348 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2360 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE0240 Signal transduction response regulator, receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE3228 putative Response regulator, CheY-like K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2352 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2367 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2351 cheV; Chemotaxis signal transducer CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D NIDE2655 putative Methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D NIDE2654 putative Chemotaxis protein CheA modulated with response regulator receiver region (modular protein) K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NIDE2657 putative Chemotaxis regulator CheY K02658 pilH; twitching motility two-component system response regulator PilH
D NIDE3753 Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE0222 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3963 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3052 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3570 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE2284 fleR; Sigma-54 dependent response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D NIDE2535 putative Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE3649 putative cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE0899 putative Quinol-cytochrome c reductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE3889 qcrB; Quinol-cytochrome c reductase, fused cytochrome b/c subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE3883 putative Sulfite:cytochrome c oxidoreductase, subunit B K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D NIDE2610 cydA; Cytochrome bd oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE0896 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE0901 membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE3296 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE3303 conserved membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NIDE2609 cydB; Cytochrome bd oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2898 putative Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NIDE2899 putative Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NIDE2406 putative polysaccharide export protein (fragment) K01991 wza; polysaccharide biosynthesis/export protein
D NIDE2377 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NIDE2174 fecR; Protein FecR, ferric citrate sensor K07165 fecR; transmembrane sensor
D NIDE2185 fecR2; Protein FecR, ferric citrate sensor K07165 fecR; transmembrane sensor
D NIDE3525 putative Iron dicitrate transmembrane sensor FecR K07165 fecR; transmembrane sensor
D NIDE2179 putative Protein FecR, ferric citrate sensor K07165 fecR; transmembrane sensor
D NIDE2371 putative Phosphorelay protein, contains HPt domain K20976 hptB; histidine phosphotransfer protein HptB
D NIDE2119 putative Histidine kinase with protein phosphatase region K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D NIDE2120 Anti-sigma factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D NIDE2368 putative Anti-sigma factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D NIDE2317 flgM; Anti-sigma 28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:nde02024]
D NIDE2040 trpE; Anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NIDE2041 trpG; Anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NIDE2969 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NIDE2777 yddE; Uncharacterized isomerase K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D NIDE2265 putative Sensor histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NIDE2267 Sigma-54 dependent DNA-binding response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE2217 Sigma-54 dependent transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE0264 putative Leu/Ile/Val-binding protein, periplasmic-binding component of ABC transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein
D NIDE3105 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3128 putative 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE2535 putative Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE3649 putative cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE1635 ribD; fused Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NIDE3491 oprM; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE3473 ttgC; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE0360 oxaA; Inner-membrane protein insertion factor OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NIDE1298 secE; Preprotein translocase, subunit SecE K03073 secE; preprotein translocase subunit SecE
D NIDE1104 secG; Preprotein translocase, membrane subunit SecG K03075 secG; preprotein translocase subunit SecG
D NIDE1331 secY; Preprotein translocase, membrane subunit SecY K03076 secY; preprotein translocase subunit SecY
D NIDE3288 yajC; Preprotein translocase, subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NIDE0623 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE2722 secA; Protein translocase, subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE4087 ftsY; Cell division protein ftsY homolog K03110 ftsY; fused signal recognition particle receptor
D NIDE3074 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NIDE1763 Response regulator, CheY like K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:nde02030]
D NIDE2353 putative Methyl-accepting chemotaxis protein (MCP) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2363 cheM; Globin-coupled methyl-accepting chemotaxis protein (modular protein) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2359 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2350 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2361 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2354 cheW; Chemotaxis signal transducer CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2362 cheW; Chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2656 putative Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2348 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2360 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE0240 Signal transduction response regulator, receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE3228 putative Response regulator, CheY-like K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2349 putative Chemotaxis regulator CheZ K03414 cheZ; chemotaxis protein CheZ
D NIDE2352 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2367 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2351 cheV; Chemotaxis signal transducer CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D NIDE2366 cheD; Chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D NIDE2347 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2365 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2289 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NIDE2299 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NIDE2300 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D NIDE2356 motA; Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D NIDE2357 motB; Flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D NIDE0266 putative Outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D NIDE0237 exported protein of unknown function K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:nde02040]
D NIDE2287 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NIDE2288 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D NIDE2289 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NIDE2290 putative Flagellar biosynthesis protein FliH with response regulator receiver domain (modular protein) K02411 fliH; flagellar assembly protein FliH
D NIDE2291 fliI; ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NIDE2292 putative Flagellar biosynthesis protein FliJ K02413 fliJ; flagellar protein FliJ
D NIDE2295 putative Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D NIDE2298 fliL; Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D NIDE2299 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NIDE2300 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D NIDE2301 putative Flagellar biosynthetic protein FliO, export component K02418 fliO; flagellar protein FliO/FliZ
D NIDE2302 fliP; Flagellar biosynthetic protein FliP, export component K02419 fliP; flagellar biosynthesis protein FliP
D NIDE2303 fliQ; Flagellar biosynthetic protein FliQ, export component K02420 fliQ; flagellar biosynthesis protein FliQ
D NIDE2304 fliR; Flagellar biosynthetic protein FliR, export component K02421 fliR; flagellar biosynthesis protein FliR
D NIDE2306 flhA; Flagellar biosynthetic protein FlhA, export component K02400 flhA; flagellar biosynthesis protein FlhA
D NIDE2305 flhB; Flagellar biosynthetic protein FlhB, export component K02401 flhB; flagellar biosynthesis protein FlhB
D NIDE2313 putative Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D NIDE2285 flgB; Flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D NIDE2286 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D NIDE2296 flgD; Flagellar hook capping protein FlgD (fragment) K02389 flgD; flagellar basal-body rod modification protein FlgD
D NIDE2297 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D NIDE2311 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D NIDE2312 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D NIDE2314 flgH; Flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D NIDE2315 flgI; Flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D NIDE2316 putative Peptidoglycan hydrolase FlgJ (fragment) K02395 flgJ; peptidoglycan hydrolase FlgJ
D NIDE2319 flgK; First flagellar hook-filament junction protein FlgK K02396 flgK; flagellar hook-associated protein 1
D NIDE2320 putative Second flagellar hook-filament junction protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D NIDE2339 fliC; Flagellin, class B K02406 fliC; flagellin
D NIDE2341 putative Flagellar capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D NIDE2342 fliS; Flagellin-specific chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D NIDE2356 motA; Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D NIDE2357 motB; Flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D NIDE0266 putative Outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D NIDE0237 exported protein of unknown function K02557 motB; chemotaxis protein MotB
D NIDE2317 flgM; Anti-sigma 28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D NIDE0990 rpoD; RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D NIDE0443 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D NIDE1344 rpoN; RNA polymerase, sigma-54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D NIDE2284 fleR; Sigma-54 dependent response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D NIDE2309 fliA; Flagellar-specific RNA polymerase sigma 28 factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells [PATH:nde04820]
D NIDE3786 putative Calcium-transporting ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:nde04980]
D NIDE2666 cobO; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NIDE3124 argK; LAO/AO transport system ATPase (fragment) K07588 MMAA; GTPase [EC:3.6.5.-]
D NIDE1868 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:nde01501]
D NIDE1934 ampG; Muropeptide MFS transporter AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NIDE0246 nagZ; Beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NIDE3475 ttgA; RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2164 putative Multidrug efflux transporter, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3494 putative RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE1686 putative Membrane-fusion protein of multidrug efflux transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3917 RND-type efflux transporter, membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2721 putative Secretion protein HlyD family precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3138 conserved protein of unknown function K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2163 putative Multidrug efflux transporter K18138 acrB; multidrug efflux pump
D NIDE3474 ttgB; RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3493 putative RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3491 oprM; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE3473 ttgC; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE4030 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NIDE1016 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NIDE0755 ftsI; Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:nde01502]
D NIDE0764 ddlB; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE0474 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE2761 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NIDE0757 murF; UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NIDE0758 mraY; Phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NIDE0761 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:nde01503]
D NIDE2972 putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NIDE0303 degP; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0681 degP2; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE1429 putative Serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2561 degP3; Serine protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2979 degQ; Protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE3344 degP; Protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0677 putative Disulfide oxidoreductase dsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D NIDE3475 ttgA; RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2164 putative Multidrug efflux transporter, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3494 putative RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE1686 putative Membrane-fusion protein of multidrug efflux transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3917 RND-type efflux transporter, membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2721 putative Secretion protein HlyD family precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3138 conserved protein of unknown function K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2163 putative Multidrug efflux transporter K18138 acrB; multidrug efflux pump
D NIDE3474 ttgB; RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3493 putative RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE3040 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:nde01000]
C 01001 Protein kinases [BR:nde01001]
D NIDE1530 protein of unknown function, putative protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D NIDE1556 putative Serine kinase HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NIDE2711 putative Tyrosine-protein kinase Etk K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NIDE2896 putative Lipopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NIDE2409 putative Exopolysaccharide biosynthesis related tyrosine-protein kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D NIDE0857 putative Phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NIDE0807 putative Histidine kinase, containing PAS domain S-box K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D NIDE0166 putative Histidine kinase with N-terminal NAD-binding region K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D NIDE3983 putative Histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D NIDE3246 putative Histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D NIDE3941 putative Sensor histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D NIDE1222 Sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NIDE0778 putative Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D NIDE2265 putative Sensor histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NIDE1255 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE3521 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE3586 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE2350 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2361 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2654 putative Chemotaxis protein CheA modulated with response regulator receiver region (modular protein) K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NIDE3753 Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE0222 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3963 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3052 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3570 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE1227 Histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE0584 putative Histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE2323 putative Hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE1908 putative Sensor histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:nde01009]
D NIDE0845 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE1590 putative Protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D NIDE1529 pph1; PP2C-family Ser/Thr protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D NIDE1958 putative Protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:nde01002]
D NIDE1078 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D NIDE4102 pilD; Type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NIDE2118 putative Prepilin peptidase CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D NIDE1537 putative Peptidase C14 K22684 MCA1; metacaspase-1 [EC:3.4.22.-]
D NIDE1422 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NIDE0251 putative Gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase
D NIDE1393 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NIDE3384 gltB; Glutamate synthase, alpha subunit K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D NIDE2921 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NIDE2995 putative Asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE3010 asnB4; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE2699 asnB; Asparagine synthetase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE2868 asnB; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NIDE0940 Sortase family protein, Peptidase C60 K07284 srtA; sortase A [EC:3.4.22.70]
D NIDE1161 membrane protein of unknown function, putative membrane protease K07052 K07052; CAAX protease family protein
D NIDE3199 conserved membrane protein of unknown function K07052 K07052; CAAX protease family protein
D NIDE4085 putative Peptidase M K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NIDE0352 putative Peptidase M1, membrane alanine aminopeptidase K08776 NPEPPS; puromycin-sensitive aminopeptidase [EC:3.4.11.14]
D NIDE3226 putative Oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D NIDE3729 putative Zn-dependent peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D NIDE3730 putative Zn-dependent peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D NIDE4282 putative Peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D NIDE0245 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NIDE1333 map; Methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D NIDE2516 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D NIDE1041 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D NIDE2929 ftsH; Cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NIDE2737 hflB; Cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NIDE1236 htpX; probable Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D NIDE2544 putative Peptidase M48, Ste24p K23010 OMA1; metalloendopeptidase OMA1, mitochondrial [EC:3.4.24.-]
D NIDE1510 rseP; Regulator of sigma E protease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D NIDE2723 Peptidase, M50 family K16922 yydH; putative peptide zinc metalloprotease protein
D NIDE3136 conserved protein of unknown function, putative Peptidase M50 K16922 yydH; putative peptide zinc metalloprotease protein
D NIDE0435 exported protein of unknown function K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D NIDE0324 dmpA; Peptidase S58 K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D NIDE0303 degP; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0681 degP2; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE1429 putative Serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2561 degP3; Serine protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2979 degQ; Protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE3344 degP; Protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0434 putative D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NIDE0773 putative Esterase, beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D NIDE0261 clpP; ATP-dependent Clp protease, proteolytic subunit clpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D NIDE3046 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NIDE1890 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NIDE1415 exported protein of unknown function, putative Peptidase S16 K07177 K07177; Lon-like protease
D NIDE2249 putative Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NIDE3144 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D NIDE2552 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NIDE3064 ctpA; C-terminal-processing protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D NIDE2155 putative Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D NIDE0427 Peptidase S49, putative signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D NIDE2543 putative Signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D NIDE3962 putative Rhomboid serine protease K07059 K07059; rhomboid family protein
D NIDE4002 Phage prohead protease, HK97 family (modular protein) K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D NIDE3055 psmA; Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE0959 putative Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE3056 psmB; Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D NIDE0958 putative Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D NIDE0297 hslV; Heat shock protein HslUV, peptidase component K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D NIDE4324 iaaA; Isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NIDE1515 pmbA; Protease PmbA K03592 pmbA; PmbA protein
D NIDE1514 tldD; Protease TldD K03568 tldD; TldD protein
D NIDE4368 putative Protein TldD K03568 tldD; TldD protein
D NIDE3712 hflC; FtsH protease activity modulator HflC K04087 hflC; modulator of FtsH protease HflC
D NIDE3711 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:nde01003]
D NIDE1480 Glycosyl transferase, family 2, with GtrA domain K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D NIDE0739 Glycosyl transferase, group 1 K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D NIDE2906 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D NIDE4322 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NIDE3591 putative Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NIDE4030 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NIDE3420 putative Phospho-N-acetylmuramoyl-pentapeptide-transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2404 putative Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (modular protein) K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE0939 membrane protein of unknown function K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D NIDE0144 otsA1; Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D NIDE1892 otsA2; Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D NIDE1666 conserved protein of unknown function K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:nde01005]
D NIDE3040 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NIDE3037 lpxB; Lipid-A-disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NIDE0164 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NIDE2646 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NIDE3039 conserved protein of unknown function, DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NIDE3032 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NIDE1500 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NIDE3033 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NIDE2556 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NIDE2554 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NIDE2985 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NIDE2557 kdsD; Arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NIDE2553 rfaEa; D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D NIDE4317 rfaEb; D-beta-D-heptose 1-phosphate adenosyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D NIDE3030 putative Lipopolysaccharide heptosyltransferase II K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NIDE3031 rfaF_gmhB; Lipopolysaccharide heptosyltransferase II and D, D-heptose 1,7-bisphosphate phosphatase (modular protein) K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D NIDE3023 putative Lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D NIDE3291 putative Glycosyl transferase, family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D NIDE4313 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D NIDE0738 Glycosyl transferase, family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D NIDE3420 putative Phospho-N-acetylmuramoyl-pentapeptide-transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NIDE2404 putative Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (modular protein) K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:nde01011]
D NIDE0979 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NIDE0763 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NIDE0762 murC; UDP-N-acetylmuramate-L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NIDE0759 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NIDE0756 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NIDE0764 ddlB; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE0474 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NIDE2761 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NIDE0758 mraY; Phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NIDE0761 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NIDE1080 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NIDE4329 mviN; Virulence factor MviN homolog K03980 murJ; putative peptidoglycan lipid II flippase
D NIDE2710 mviN; Virulence factor mviN homolog K03980 murJ; putative peptidoglycan lipid II flippase
D NIDE4030 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NIDE3591 putative Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NIDE1016 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NIDE0755 ftsI; Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NIDE0434 putative D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NIDE0773 putative Esterase, beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D NIDE4322 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NIDE0940 Sortase family protein, Peptidase C60 K07284 srtA; sortase A [EC:3.4.22.70]
D NIDE3727 putative Soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NIDE1482 mltC; Membrane-bound lytic murein transglycosylase C precursor K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D NIDE3445 putative Lytic murein transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D NIDE0495 exported protein of unknown function, contains Transglycosylase SLT domain K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D NIDE2024 protein of unknown function, contains FHA and Transglycosylase SLT domain K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D NIDE1709 conserved protein of unknown function, putative Aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D NIDE2034 putative lipoprotein, RlpA-like K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NIDE1284 exported protein of unknown function, putative Rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NIDE1009 putative Amidase enhancer protein LytB K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D NIDE2972 putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NIDE4304 putative N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:nde01004]
D NIDE0796 fabD; Malonyl-CoA-(acyl-carrier-protein) transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NIDE0795 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NIDE0854 fabH; 3-ketoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NIDE1991 conserved exported protein of unknown function K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NIDE0799 fabF2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0587 fabF; Beta-ketoacyl ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE2644 fabF3; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NIDE0049 fabG2; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE1909 fabG3; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE0797 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3580 fabG5; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE2473 fabG4; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NIDE3041 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NIDE1599 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NIDE0349 tesA; TAP complex multifunctional esterase (modular protein) K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D NIDE2201 conserved protein of unknown function, putative Lipolytic enzyme K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D NIDE1497 scdA; Stearoyl-CoA 9-desaturase (fragment) K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE1213 desC; Fatty acid desaturase, type 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE2480 Acyl-CoA desaturase (fragment) K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NIDE1643 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3851 acsA; Acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NIDE3866 putative Acyl-CoA synthetase (NDP forming) K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D NIDE3105 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3128 putative 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE0794 plsX; Fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NIDE2559 plsY; conserved membrane protein, putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NIDE0425 putative Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:nde01008]
D NIDE2156 conserved protein of unknown function, MbtH-like K05375 mbtH; MbtH protein
C 01006 Prenyltransferases [BR:nde01006]
D NIDE0701 ispA; Geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D NIDE3385 Polyprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NIDE1513 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NIDE1238 Squalene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
D NIDE1520 crtB; Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D NIDE3355 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NIDE0906 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:nde01007]
D NIDE4019 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NIDE4016 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NIDE2725 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NIDE3366 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NIDE4105 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NIDE3290 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NIDE2927 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NIDE1077 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NIDE1733 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NIDE4238 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NIDE2053 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NIDE1425 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NIDE0751 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NIDE4397 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NIDE1631 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NIDE1632 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NIDE2193 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NIDE1509 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NIDE0403 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NIDE1707 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NIDE0398 pheS; Phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NIDE0399 pheT; Phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NIDE2567 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NIDE4115 yfdZ; PLP-dependent aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D NIDE0503 yfdZ; Aminotransferase, probable Transaminase MtnE K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D NIDE4355 putative Aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-]
D NIDE0420 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NIDE3447 bioF; 8-amino-7-oxononanoate synthase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NIDE4184 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NIDE0483 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NIDE2154 dat; Diaminobutyrate-2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D NIDE2550 bioA; Adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NIDE4293 hemL; Glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NIDE4136 dat; D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D NIDE1103 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE3737 putative Aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NIDE0734 phnW; 2-aminoethylphosphonate aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D NIDE1160 Aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NIDE2732 putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D NIDE2865 putative Aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:nde00194]
D NIDE0373 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NIDE0372 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NIDE0371 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NIDE0370 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NIDE0369 putative ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NIDE3732 atpF; ATP synthase F0, subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NIDE3733 atpE; ATP synthase F0, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NIDE3734 atpB; ATP synthase F0, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NIDE3735 putative ATP synthase F0, subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:nde03000]
D NIDE1023 protein of unknown function, putative AraC type transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D NIDE3537 ada; Methylated-DNA-[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D NIDE0055 oxyR; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NIDE3531 Transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D NIDE2126 DNA-binding transcriptional regulator, tetR-type K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D NIDE1674 protein of unknown function K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D NIDE0064 merR; Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D NIDE0190 putative Regulatory protein, MerR family, Cobalamin B12-binding K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D NIDE1037 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NIDE2176 fur2; Ferric uptake regulation protein Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NIDE4042 perR; Peroxide-responsive repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D NIDE2535 putative Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE3649 putative cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NIDE0406 putative HTH-type transcriptional regulator, rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D NIDE3710 arsR; Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NIDE1731 putative Biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NIDE0075 putative Transcriptional regulator, Lambda repressor-like K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D NIDE0271 Sigma-54 dependent response regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NIDE3319 Sigma-54 dependent transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator
D NIDE0029 fhlA; Formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D NIDE1475 nifA; Sigma-54 dependent transcriptional regulator NifA K15836 fhlA; formate hydrogenlyase transcriptional activator
D NIDE3238 nifA; Nif-specific regulatory protein NifA K15836 fhlA; formate hydrogenlyase transcriptional activator
D NIDE3498 Sigma-54 dependent transcriptional regulator (modular protein) K15836 fhlA; formate hydrogenlyase transcriptional activator
D NIDE0688 nikR; Nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D NIDE2475 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NIDE0365 parB; Chromosomal partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NIDE1200 putative Thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NIDE2588 putative Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D NIDE3896 Transcription elongation factor, greA/greB family K06140 rnk; regulator of nucleoside diphosphate kinase
D NIDE2538 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NIDE3217 conserved protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D NIDE0281 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE1248 dksA; DnaK suppressor protein (modular protein) K06204 dksA; RNA polymerase-binding transcription factor
D NIDE3409 protein of unknown function, putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE0167 nrdR; Transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NIDE1087 conserved protein of unknown function, Protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:nde03021]
D NIDE1339 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NIDE1303 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NIDE1304 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NIDE2463 rpoZ; DNA-directed RNA polymerase, omega subunit (modular protein) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NIDE0990 rpoD; RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D NIDE0443 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D NIDE1246 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D NIDE3487 putative RNA polymerase ECF-type sigma factor containing TPR repeat K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NIDE1607 rpoE; RNA polymerase sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NIDE2808 sigZ; RNA polymerase sigma factor SigZ (sigma Z) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NIDE1747 putative RNA polymerase sigma factor, sigma-24 homolog K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NIDE1381 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor
D NIDE1344 rpoN; RNA polymerase, sigma-54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D NIDE2309 fliA; Flagellar-specific RNA polymerase sigma 28 factor K02405 fliA; RNA polymerase sigma factor FliA
D NIDE4134 nusA; Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D NIDE1385 nusB; Transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NIDE1299 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NIDE2370 putative Response regulator receiver modulated Serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D NIDE1229 Response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D NIDE1858 putative Response regulator, CheY-like K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D NIDE2369 putative Anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist
D NIDE0281 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE1248 dksA; DnaK suppressor protein (modular protein) K06204 dksA; RNA polymerase-binding transcription factor
D NIDE3409 protein of unknown function, putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE2546 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D NIDE0975 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:nde03019]
D NIDE1420 protein of unknown function, contains NHL repeats K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
D NIDE1018 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NIDE0800 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NIDE3723 2',3'-cyclic-nucleotide 2'-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D NIDE4288 putative Guanyl-specific ribonuclease Sa K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D NIDE1472 rhlE; ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NIDE3184 rhlE; ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NIDE3642 deaD; DEAD-box RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NIDE4071 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NIDE4127 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NIDE0975 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NIDE4287 putative 6-phosphofructokinase (modular protein) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NIDE1728 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D NIDE4028 hscA; Chaperone protein HscA (Hsc66) K04043 dnaK; molecular chaperone DnaK
D NIDE1378 groL; Chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NIDE3408 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D NIDE3880 conserved protein of unknown function, putative Polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D NIDE2321 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
D NIDE1346 yhbJ; conserved exported protein of unknown function UPF0042, predicted P-loop containing ATPase K06958 rapZ; RNase adapter protein RapZ
D NIDE1795 putative Helicase (C-terminal fragment) K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D NIDE2587 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome [BR:nde03041]
C 03011 Ribosome [BR:nde03011]
D NIDE0426 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D NIDE2757 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NIDE1317 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NIDE1338 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NIDE1328 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NIDE0789 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NIDE1307 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NIDE1325 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NIDE2754 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NIDE1310 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NIDE1337 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NIDE1306 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NIDE1336 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NIDE1324 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NIDE4129 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NIDE3073 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NIDE1320 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NIDE1315 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NIDE4235 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NIDE4163 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NIDE1301 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NIDE1314 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NIDE1311 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NIDE1312 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NIDE1323 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NIDE1326 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NIDE0169 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NIDE1300 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NIDE1302 rplJL; Fused 50S ribosomal proteins L10 and L7/L12 (modular protein) K02935 RP-L7; large subunit ribosomal protein L7/L12
D NIDE2753 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NIDE1321 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NIDE1330 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NIDE1318 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NIDE1340 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NIDE1327 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NIDE3070 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NIDE0400 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NIDE1102 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NIDE1316 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NIDE1313 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NIDE1322 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NIDE1101 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NIDE2677 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NIDE1319 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NIDE1329 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NIDE0976 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NIDE1295 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NIDE0401 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NIDE0782 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NIDE_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D NIDE_16S_1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NIDErRNA1386600D 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:nde03009]
D NIDE0800 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NIDE2911 era; GTP-binding protein Era homolog K03595 era; GTPase
D NIDE1100 obgE; GTPase involved in DNA replication and ribosome assembly K03979 obgE; GTPase [EC:3.6.5.-]
D NIDE0281 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE1248 dksA; DnaK suppressor protein (modular protein) K06204 dksA; RNA polymerase-binding transcription factor
D NIDE3409 protein of unknown function, putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NIDE4134 nusA; Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D NIDE1385 nusB; Transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NIDE1299 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NIDE0538 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NIDE0396 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NIDE2565 putative Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NIDE1726 putative Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NIDE0363 gidB; Methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NIDE0753 mraW; S-adenosyl-L-methionine-dependent methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NIDE2747 putative Methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NIDE3719 tly; Hemolysin TlyA-family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D NIDE4104 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NIDE1670 yccW; putative Methyltransferase with PUA domain K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NIDE1893 putative RNA methylase, UPF0020 K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D NIDE3728 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NIDE1423 rluB; 23S rRNA pseudouridylate synthase B (modular protein) K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NIDE2595 Pseudouridine synthase, rsuA family K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NIDE0379 rluD2; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NIDE0376 rluD1; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NIDE1434 rluE; 23S rRNA pseudouridylate synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D NIDE3971 putative Pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D NIDE1679 rimI; Ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D NIDE0598 putative N-acetyltransferase, GCN5-related K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D NIDE3072 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D NIDE0302 yliG; putative tRNA modifying enzyme, MiaB-like K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D NIDE1187 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D NIDE1018 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NIDE1708 yqgF; predicted Holliday junction resolvase (modular protein) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D NIDE3642 deaD; DEAD-box RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NIDE4242 engA; GTP-binding protein EngA K03977 engA; GTPase
D NIDE2613 putative GTP-binding protein HflX K03665 hflX; GTPase
D NIDE2459 putative GTPase HflX, GTP-binding protein K03665 hflX; GTPase
D NIDE2572 putative dsRNA-binding protein, predicted ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NIDE3263 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NIDE4131 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D NIDE4135 yhbC; conserved protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D NIDE1097 conserved protein of unknown function, Iojap family K09710 ybeB; ribosome-associated protein
D NIDE4088 conserved protein of unknown function, putative Metalloprotease K07042 ybeY; probable rRNA maturation factor
D NIDE1345 Ribosomal protein S30Ae-family protein, putative sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D NIDE3170 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
D NIDE0792 conserved protein of unknown function, DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:nde03016]
D NIDE3200 putative Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D NIDE4288 putative Guanyl-specific ribonuclease Sa K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D NIDE1150 conserved protein of unknown function, putative Phosphoesterase and Polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D NIDE2519 conserved protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D NIDE2518 conserved protein of unknown function DUF101 K24956 ZBTB8OS; protein archease
D NIDE4019 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NIDE1509 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NIDE1077 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NIDE4238 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NIDE2927 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NIDE4016 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NIDE3290 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NIDE2053 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NIDE1425 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NIDE1707 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NIDE0751 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NIDE0403 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NIDE2193 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NIDE4105 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NIDE1733 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NIDE4397 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NIDE0398 pheS; Phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NIDE0399 pheT; Phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NIDE2725 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NIDE3366 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NIDE4327 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D NIDE0988 hinT; Purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NIDE0444 trmI; tRNA (adenine-N(1)-)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D NIDE2973 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NIDE4130 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NIDE0527 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D NIDE4024 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NIDE2572 putative dsRNA-binding protein, predicted ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NIDE3355 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NIDE0361 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NIDE0362 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NIDE0359 putative Ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D NIDE1871 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NIDE2445 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D NIDE3078 putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D NIDE4377 yjjK; ABC-type transport system, ATPase component K06020 ettA; energy-dependent translational throttle protein EttA
D NIDE1631 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NIDE1632 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NIDE1745 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D NIDE1919 miaB; Isopentenyl-adenosine A37 tRNA methylthiolase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D NIDE1920 putative tRNA modifying enzyme, MiaB-like K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D NIDE0295 trmFO; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D NIDE3071 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D NIDE3168 yibK; RNA methyltransferase TrmH, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NIDE1675 putative 23S rRNA methyltransferase RlmB K03437 spoU; RNA methyltransferase, TrmH family
D NIDE0368 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NIDE3396 putative PP-loop ATPase, YdaO type K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D NIDE0471 ydaO; putative PP-loop ATPase, YdaO-related K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NIDE4165 putative Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NIDE2748 putative Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NIDE4026 iscA; Iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D NIDE1895 putative Iron-sulfur cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D NIDE1010 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NIDE1249 queC; Queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NIDE4038 putative 6-pyruvoyl-tetrahydropterin synthase (modular protein) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NIDE3556 pts; 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NIDE0244 putative Radical-activating enzyme, radical SAM superfamily K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NIDE0820 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (modular protein) K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NIDE1121 yjeS; putative 4Fe-4S ferredoxin K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D NIDE3289 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NIDE1125 putative Thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NIDE2739 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NIDE1678 putative Peptidase M22 K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NIDE2458 gcp; Probable O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NIDE4120 yjeE; conserved protein of unknown function UPF0079, putative ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D NIDE4127 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:nde03012]
D NIDE3628 yciH; Translation initiation factor 1 K03113 EIF1; translation initiation factor 1
D NIDE4133 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D NIDE0402 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NIDE3551 putative ABC-type transport system, ATPase component K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D NIDE2758 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D NIDE1294 tufA; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE1309 tufB; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE1308 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D NIDE2562 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D NIDE0977 prfA; Peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D NIDE2760 frr; Ribosome recycling factor K02838 frr; ribosome recycling factor
D NIDE0978 hemK; Protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D NIDE0783 pth; Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D NIDE1334 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D NIDE2467 efp; Elongation factor P (EF-P) K02356 efp; elongation factor P
D NIDE2054 prfB; Peptide chain release factor 2 (RF-2) K02836 prfB; peptide chain release factor 2
D NIDE3635 prfC; Peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
D NIDE1494 yaeJ; putative Peptide chain release factor, class I K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:nde03110]
D NIDE2263 clpB2; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D NIDE2457 clpB3; Chaperone protein ClpB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D NIDE0260 clpX; ATP-dependent Clp protease, ATP-binding subunit clpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D NIDE0298 hslU; Heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D NIDE1728 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D NIDE4028 hscA; Chaperone protein HscA (Hsc66) K04043 dnaK; molecular chaperone DnaK
D NIDE1378 groL; Chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NIDE1727 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D NIDE1156 protein of unknown function, contains DnaJ domain K03686 dnaJ; molecular chaperone DnaJ
D NIDE4027 hscB; Co-chaperone protein HscB (Hsc20) K04082 hscB; molecular chaperone HscB
D NIDE1729 grpE; Chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE
D NIDE2453 Heat shock protein, Hsp20 family K13993 HSP20; HSP20 family protein
D NIDE3859 Heat shock protein, Hsp20 family K13993 HSP20; HSP20 family protein
D NIDE1379 groS; Chaperonin GroES K04078 groES; chaperonin GroES
D NIDE0303 degP; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE0681 degP2; Serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE1429 putative Serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2561 degP3; Serine protease do precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2979 degQ; Protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE3344 degP; Protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D NIDE2929 ftsH; Cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NIDE2737 hflB; Cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NIDE3734 atpB; ATP synthase F0, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NIDE0040 conserved exported protein of unknown function, periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy
D NIDE0030 conserved protein of unknown function K06006 cpxP; periplasmic protein CpxP/Spy
D NIDE3404 conserved exported protein of unknown function, putative Periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy
D NIDE3279 protein of unknown function, putative Chaperone protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D NIDE1683 ppiB; Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D NIDE0801 ppiA; Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D NIDE2497 ppiC; Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D NIDE0321 fbp; Peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D NIDE3605 fkpA; Peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D NIDE3086 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D NIDE4319 putative Peptidylprolyl isomerase, PpiC-type K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D NIDE4320 putative Peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D NIDE1582 trxA; Thioredoxin K03671 TXN; thioredoxin
D NIDE2202 trxA; Thioredoxin K03671 TXN; thioredoxin
D NIDE3877 trxC; Thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D NIDE3582 grxD; Glutaredoxin K07390 grxD; monothiol glutaredoxin
D NIDE0677 putative Disulfide oxidoreductase dsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
C 04131 Membrane trafficking [BR:nde04131]
D NIDE2730 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NIDE1107 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NIDE0478 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NIDE2807 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE4286 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:nde04121]
D NIDE3265 conserved protein of unknown function DUF797 K13570 pup; prokaryotic ubiquitin-like protein Pup
D NIDE1420 protein of unknown function, contains NHL repeats K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
C 03051 Proteasome [BR:nde03051]
D NIDE3055 psmA; Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE0959 putative Proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D NIDE3056 psmB; Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D NIDE0958 putative Proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D NIDE3058 pan; Proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
D NIDE0955 Uncharacterized ATPase, AAA family K13527 mpa; proteasome-associated ATPase
D NIDE3054 conserved protein of unknown function, putative Proteasome component K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D NIDE0960 conserved protein of unknown function, putative proteasome component K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D NIDE3057 conserved protein of unknown function, putative Proteasome component K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
D NIDE0956 conserved protein of unknown function, putative proteasome component K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:nde03032]
D NIDE1427 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NIDE0404 hupA; Transcriptional dual regulator HU-alpha K03530 hupB; DNA-binding protein HU-beta
D NIDE4047 hupB; Transcriptional dual regulator HU-beta K03530 hupB; DNA-binding protein HU-beta
D NIDE4109 ihfA; Integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D NIDE0428 ihfB; Integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D NIDE0001 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NIDE3441 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NIDE4231 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NIDE0989 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE2582 dnaE2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NIDE0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NIDE4236 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NIDE2926 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NIDE0278 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NIDE3069 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NIDE0992 rnhC; Ribonuclease HIII (fragment) K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NIDE0004 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NIDE0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NIDE2074 top6A; DNA topoisomerase VI, subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D NIDE2073 top6B; DNA topoisomerase VI, subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
D NIDE1020 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:nde03036]
D NIDE0800 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NIDE4164 putative Formimidoyltransferase-cyclodeaminase K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D NIDE0404 hupA; Transcriptional dual regulator HU-alpha K03530 hupB; DNA-binding protein HU-beta
D NIDE4047 hupB; Transcriptional dual regulator HU-beta K03530 hupB; DNA-binding protein HU-beta
D NIDE4109 ihfA; Integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D NIDE0428 ihfB; Integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D NIDE0001 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NIDE0860 putative Chromosome segregation protein Smc K03529 smc; chromosome segregation protein
D NIDE1417 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D NIDE1418 scpB; Segregation and condensation protein B (modular protein) K06024 scpB; segregation and condensation protein B
D NIDE0766 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NIDE2912 ftsB; Cell division protein FtsB homolog K05589 ftsB; cell division protein FtsB
D NIDE3067 ftsE; Cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NIDE0755 ftsI; Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NIDE0539 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D NIDE0754 protein of unknown function K03586 ftsL; cell division protein FtsL
D NIDE0765 putative Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D NIDE0760 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D NIDE3066 putative Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NIDE0767 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NIDE3725 putative Cell division protein ZapA K09888 zapA; cell division protein ZapA
D NIDE3726 putative Cell division protein ZapB K09892 zapB; cell division protein ZapB
D NIDE2972 putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NIDE3475 ttgA; RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2164 putative Multidrug efflux transporter, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3494 putative RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE1686 putative Membrane-fusion protein of multidrug efflux transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3917 RND-type efflux transporter, membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2721 putative Secretion protein HlyD family precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3138 conserved protein of unknown function K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE0772 putative Cell division protein DivIVA K04074 divIVA; cell division initiation protein
D NIDE1013 mreB; Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D NIDE1014 putative Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D NIDE1017 mrdB; Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D NIDE0364 parA; Chromosomal partitioning ATPase ParA K03496 parA; chromosome partitioning protein
D NIDE0365 parB; Chromosomal partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NIDE0362 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NIDE0363 gidB; Methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NIDE0295 trmFO; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D NIDE0296 xerC; Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC
D NIDE3364 xerD; Tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D NIDE0412 mrp; putative ATPase, Mrp homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE2481 mrp; Protein Mrp, putative ATPase (fragment) K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE3342 putative Cell division ATPase MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE2961 conserved protein of unknown function, Fic protein family K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NIDE4321 engB; GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:nde03400]
D NIDE4328 ogt; Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NIDE0203 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D NIDE1448 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE0691 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D NIDE1914 mutY; A/G-specific adenine glycosylase (fragment) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NIDE2460 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NIDE4162 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NIDE1915 mutT; Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NIDE3537 ada; Methylated-DNA-[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D NIDE0317 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D NIDE0494 putative Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE1518 udgA; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NIDE0051 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D NIDE0833 mutM; DNA-formamidopyrimidine glycosylase and DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NIDE4335 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NIDE3264 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NIDE2036 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NIDE4158 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NIDE3216 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
D NIDE0568 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
D NIDE3077 uvrB; Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
D NIDE0595 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D NIDE1291 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NIDE1303 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NIDE1304 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NIDE1339 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NIDE2463 rpoZ; DNA-directed RNA polymerase, omega subunit (modular protein) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NIDE4318 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NIDE4122 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D NIDE1108 mutS2; MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D NIDE3356 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D NIDE3721 xseA; Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NIDE3720 xseB; Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NIDE2582 dnaE2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NIDE0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NIDE4236 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NIDE2926 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NIDE0278 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE1705 recA; Recombinase RecA K03553 recA; recombination protein RecA
D NIDE0416 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NIDE0418 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NIDE1086 putative Crossover junction endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D NIDE0238 putative Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D NIDE1676 radA; DNA recombination protein RadA K04485 radA; DNA repair protein RadA/Sms
D NIDE1408 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NIDE2909 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NIDE0280 recR; Recombination protein recR K06187 recR; recombination protein RecR
D NIDE1583 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D NIDE1548 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D NIDE0004 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NIDE0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NIDE1020 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D NIDE0404 hupA; Transcriptional dual regulator HU-alpha K03530 hupB; DNA-binding protein HU-beta
D NIDE4047 hupB; Transcriptional dual regulator HU-beta K03530 hupB; DNA-binding protein HU-beta
D NIDE4109 ihfA; Integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D NIDE0428 ihfB; Integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D NIDE4071 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NIDE2248 putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NIDE4316 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NIDE2249 putative Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NIDE3144 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D NIDE2247 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D NIDE1706 putative Regulatory protein RecX K03565 recX; regulatory protein
D NIDE3847 putative DNA-directed DNA polymerase, family X, modulated with phosphoesterase domain K02347 polX; DNA polymerase (family X)
D NIDE3063 putative DNA polymerase IV, family X (N-terminal fragment) K02347 polX; DNA polymerase (family X)
D NIDE1167 putative ATP-dependent DNA helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D NIDE1937 nrdJ; Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:nde03029]
D NIDE0899 putative Quinol-cytochrome c reductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE3889 qcrB; Quinol-cytochrome c reductase, fused cytochrome b/c subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NIDE4133 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D NIDE0402 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NIDE2758 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D NIDE1294 tufA; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE1309 tufB; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE1308 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D NIDE2562 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D NIDE2911 era; GTP-binding protein Era homolog K03595 era; GTPase
D NIDE2725 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NIDE4238 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NIDE1425 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NIDE3290 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NIDE2918 gatA; Glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NIDE2915 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NIDE2920 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NIDE0790 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NIDE3044 putative Outer membrane protein assembly factor YaeT precursor K07277 SAM50; outer membrane protein insertion porin family
D NIDE1728 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D NIDE4028 hscA; Chaperone protein HscA (Hsc66) K04043 dnaK; molecular chaperone DnaK
D NIDE1729 grpE; Chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE
D NIDE1378 groL; Chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NIDE1379 groS; Chaperonin GroES K04078 groES; chaperonin GroES
D NIDE1727 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D NIDE1156 protein of unknown function, contains DnaJ domain K03686 dnaJ; molecular chaperone DnaJ
D NIDE4024 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NIDE4027 hscB; Co-chaperone protein HscB (Hsc20) K04082 hscB; molecular chaperone HscB
D NIDE3582 grxD; Glutaredoxin K07390 grxD; monothiol glutaredoxin
D NIDE0412 mrp; putative ATPase, Mrp homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE2481 mrp; Protein Mrp, putative ATPase (fragment) K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE3342 putative Cell division ATPase MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NIDE0360 oxaA; Inner-membrane protein insertion factor OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:nde02000]
D NIDE3036 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NIDE3743 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NIDE3457 hlyB; Type I secretion system ATPase HlyB K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NIDE1807 msbA; Lipid A export ATP-binding/permease protein MsbA K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D NIDE2153 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D NIDE1743 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D NIDE4018 ABC-type transport system, ATPase component K15738 uup; ABC transport system ATP-binding/permease protein
D NIDE1623 cysP; Sulfate/thiosulfate ABC transporter, periplasmic binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NIDE1622 cysT; Sulfate/thiosulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NIDE1621 cysW; Sulfate/thiosulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D NIDE1620 cysA; Sulfate/thiosulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NIDE3152 modA; Molybdate ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3158 modA3; Molybdenum ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3155 putative Molybdate ABC transporter, periplasmic binding protein K02020 modA; molybdate transport system substrate-binding protein
D NIDE3149 modB; Molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D NIDE3148 modC; Molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D NIDE1036 ABC transporter, periplasmic binding component, putative Fe3+ transport system K02012 afuA; iron(III) transport system substrate-binding protein
D NIDE1035 ABC transporter, permease component, putative Fe3+ transport system K02011 afuB; iron(III) transport system permease protein
D NIDE1034 ABC transporter, ATP-binding component, putative Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NIDE1801 potD; Polyamine ABC transporter, periplasmic-binding protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D NIDE1800 potC; Polyamine ABC transporter, permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D NIDE1799 potB; Polyamine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D NIDE1798 potA; Polyamine ABC transporter, ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NIDE3401 putative ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D NIDE3398 putative ABC-type sugar transport system, periplasmic binding component K10236 thuE; trehalose/maltose transport system substrate-binding protein
D NIDE3399 putative ABC-type sugar transport system, permease component K10237 thuF; trehalose/maltose transport system permease protein
D NIDE3400 putative ABC-type sugar transport system, permease component K10238 thuG; trehalose/maltose transport system permease protein
D NIDE1505 conserved protein of unknown function, putative ABC transporter, periplasmic binding component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE0865 yrbD; ABC transporter, periplasmic binding component, putative ATP-dependent toluene efflux transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE3907 putative ABC-type transport system, periplasmic binding component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NIDE1503 putative ABC transporter, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE0863 yrbE; ABC transporter, membrane component, putative ATP-dependent toluene efflux transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE3909 putative ABC-type transport system, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NIDE0864 yrbF; ABC transporter, ATPase component, putative ATP-dependent toluene efflux transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE3908 putative ABC-type transport system, ATP binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE1504 putative ABC transporter, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NIDE3906 putative ABC-type transport system, auxiliary component K18480 linN; cholesterol transport system auxiliary component
D NIDE0866 putative ABC transporter, auxiliary component, putative ATP-dependent toluene efflux transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1483 conserved protein of unknown function, putative auxiliary component of ATP-dependent toluene efflux transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE3827 putative Toluene tolerance-type auxiliary component of ABC-type transport system K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1452 protein of unknown function K07323 mlaC; phospholipid transport system substrate-binding protein
D NIDE1207 putative Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2420 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2425 putative Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2430 pstS3; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2431 pstS4; Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NIDE2419 putative Phosphate ABC transporter, permease protein with WD40-like region (modular protein) K02037 pstC; phosphate transport system permease protein
D NIDE2418 pstA; Phosphate ABC transporter, auxiliary and permease protein (modular protein) K02038 pstA; phosphate transport system permease protein
D NIDE2417 pstB; Phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NIDE0264 putative Leu/Ile/Val-binding protein, periplasmic-binding component of ABC transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein
D NIDE2530 protein of unknown function, putative Amino acid ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D NIDE1521 ABC-type transport system, periplasmic binding component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D NIDE1428 ABC-type transport system, ATPase component, putative molybdenum transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D NIDE2674 putative Vitamin B12 import system, periplasmic binding protein BtuF K25034 btuF; cobalamin transport system substrate-binding protein
D NIDE2673 btuC; Vitamin B12 import system, permease protein BtuC K25027 btuC; cobalamin transport system permease protein
D NIDE2672 putative Vitamin B12 import system, ATP-binding protein BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D NIDE0383 mntC; Manganese transport system, permease component K09819 ABC.MN.P; manganese/iron transport system permease protein
D NIDE0384 mntB; Manganese transport system, ATPase component K09820 ABC.MN.A; manganese/iron transport system ATP-binding protein
D NIDE0385 putative Manganese transport system, periplasmic binding component K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D NIDE0507 ABC-2 type transporter, permease component, putative LPS export system K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE2892 putative O-antigen export system, permease protein RfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE3433 wzm; ABC-type polysaccharide transport system, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D NIDE0508 ABC-type transport system, ATPase component, putative LPS export system K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE2891 rfbB; O-antigen export system, ATP-binding protein RfbB (modular protein) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE3332 rfbB2; O-antigen export system, ATP-binding protein RfbB (modular protein) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE3432 wzt; ABC-type polysaccharide transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NIDE2642 putative Permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D NIDE2643 putative Permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D NIDE1343 lptB; ABC-type transport system, ATPase component, putative lipopolysaccharide transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NIDE1278 ABC-type transport system, permease component K25151 gldF; gliding motility-associated transport system permease protein
D NIDE1279 ABC-type transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D NIDE1277 conserved membrane protein of unknown function K25153 gldG; gliding motility-associatede transport system auxiliary component
D NIDE0033 ABC transport system, permease component K25181 ybhS; drug efflux transport system permease protein
D NIDE0032 ybhF; ABC transport system, fused ATPase components K25182 ybhF; drug efflux transport system ATP-binding protein
D NIDE0031 putative Secretion protein HlyD K25183 ybhG; membrane fusion protein YbhG
D NIDE2052 lolC; Lipoprotein-releasing system, transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D NIDE2051 lolD; Lipoprotein-releasing system, ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NIDE3066 putative Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NIDE3067 ftsE; Cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NIDE3335 putative ABC-2 type transport system, ATP-binding and permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D NIDE0520 putative Daunorubicin resistance ABC transporter, membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D NIDE0034 yhhJ; ABC transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D NIDE3338 ABC-type transport system, ATP-binding component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NIDE3435 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NIDE0519 drrA; Daunorubicin resistance ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NIDE0666 ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE1084 macC; ABC transporter, permease component, putative Macrolide export permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE1094 putative ABC transporter, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE0351 putative Uncharacterized ABC-type transport system, permease component YbbP K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE3321 putative ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE3944 putative ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE0667 ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D NIDE0665 ybbA; ABC-type transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NIDE1083 macB; ABC transporter, ATPase component, putative Macrolide export ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NIDE1090 ABC transporter, ATP-binding component, putative Lipoprotein-releasing system protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NIDE0350 ybbA; Uncharacterized ABC-type transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NIDE3322 ybbA; ABC-type transport system, ATP-binding component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NIDE3807 putative FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D NIDE1739 putative Multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump
D NIDE2514 putative Sugar transporter of the major facilitator superfamily K03535 gudP; MFS transporter, ACS family, glucarate transporter
D NIDE1382 narK; Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D NIDE1934 ampG; Muropeptide MFS transporter AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NIDE3663 tetA; Tetracycline efflux transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D NIDE3241 putative Multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D NIDE1360 amtB; Ammonium transporter Amt K03320 amt; ammonium transporter, Amt family
D NIDE0941 conserved exported protein of unknown function, contains von Willebrand factor, type A and vault protein inter-alpha-trypsin domain K07114 yfbK; Ca-activated chloride channel homolog
D NIDE1933 focA; Formate transporter K06212 focA; formate transporter
D NIDE3242 putative Nitrite transporter NirC K21993 fdhC; formate transporter
D NIDE1364 nirC; Nitrite transporter K02598 nirC; nitrite transporter
D NIDE0267 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D NIDE0276 mscS; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D NIDE0153 putative Mechanosensitive ion channel, transmembrane region (fragment) K03442 mscS; small conductance mechanosensitive channel
D NIDE3131 putative Small-conductance mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D NIDE2910 mgtE; Magnesium transporter MgtE K06213 mgtE; magnesium transporter
D NIDE2356 motA; Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D NIDE2357 motB; Flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D NIDE0266 putative Outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D NIDE0237 exported protein of unknown function K02557 motB; chemotaxis protein MotB
D NIDE2168 exbB3; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D NIDE0646 exbB; Biopolymer transport protein exbB K03561 exbB; biopolymer transport protein ExbB
D NIDE1033 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D NIDE2167 exbD3; Biopolymer transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D NIDE1032 exbD; Biopolymer transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D NIDE0647 exbD; Biopolymer transport protein exbD K03559 exbD; biopolymer transport protein ExbD
D NIDE3363 tolQ; Protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D NIDE3362 tolR; Protein TolR K03560 tolR; biopolymer transport protein TolR
D NIDE4350 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter
D NIDE0065 merT; Mercury ion transport protein K08363 merT; mercuric ion transport protein
D NIDE0066 merP; Periplasmic mercury ion binding protein K08364 merP; periplasmic mercuric ion binding protein
D NIDE2035 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NIDE2575 putative Outer membrane protein, ompA family K03286 TC.OOP; OmpA-OmpF porin, OOP family
D NIDE1997 conserved exported protein of unknown function, putative Outer membrane protein OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D NIDE0556 putative long-chain fatty acid outer membrane transporter K06076 fadL; long-chain fatty acid transport protein
D NIDE3592 putative Porin K06076 fadL; long-chain fatty acid transport protein
D NIDE2178 putative Iron(III) dicitrate transport protein FecA K16091 fecA; Fe(3+) dicitrate transport protein
D NIDE3524 putative TonB-dependent Iron(III) dicitrate transport protein FecA K16091 fecA; Fe(3+) dicitrate transport protein
D NIDE2671 putative Vitamin B12 transporter BtuB precursor K16092 btuB; vitamin B12 transporter
D NIDE2173 fhuA; Ferrichrome iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE2183 putative Ferric iron uptake protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0635 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0638 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0641 putative TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0644 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0648 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0659 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0546 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0547 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE0650 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NIDE1767 putative Cation efflux system protein CzcC K15725 czcC; outer membrane protein, heavy metal efflux system
D NIDE1802 putative Outer membrane protein TolC K15725 czcC; outer membrane protein, heavy metal efflux system
D NIDE3249 putative Heavy metal efflux system, outer membrane lipoprotein K15725 czcC; outer membrane protein, heavy metal efflux system
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE3491 oprM; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE3473 ttgC; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE2682 putative Polysaccharide export protein K20988 vpsN; polysaccharide biosynthesis/export protein VpsN
D NIDE2898 putative Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NIDE2899 putative Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NIDE2406 putative polysaccharide export protein (fragment) K01991 wza; polysaccharide biosynthesis/export protein
D NIDE3044 putative Outer membrane protein assembly factor YaeT precursor K07277 SAM50; outer membrane protein insertion porin family
D NIDE0853 protein of unknown function, TPR-like K05807 bamD; outer membrane protein assembly factor BamD
D NIDE1342 conserved protein of unknown function K09774 lptA; lipopolysaccharide export system protein LptA
D NIDE1580 conserved exported protein of unknown function, putative LPS-assembly protein Imp K04744 lptD; LPS-assembly protein
D NIDE2930 zitB; Zinc transporter ZitB K16264 czcD; cobalt-zinc-cadmium efflux system protein
D NIDE3978 putative Divalent metal cation permease, ZupT-like K07238 TC.ZIP; zinc transporter, ZIP family
D NIDE2192 putative Zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D NIDE3251 czcA; Heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D NIDE1804 Heavy metal efflux pump, CzcA family, putative Acriflavine resistance protein B K15726 czcA; heavy metal efflux system protein
D NIDE3755 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D NIDE1765 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D NIDE2163 putative Multidrug efflux transporter K18138 acrB; multidrug efflux pump
D NIDE3474 ttgB; RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3493 putative RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE2965 Multidrug efflux transporter K19585 oqxB; multidrug efflux pump
D NIDE3528 mdtB; Multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump
D NIDE3527 mdtC; Multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump
D NIDE3252 sugE; Quaternary ammonium compound-resistance protein SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D NIDE0063 ynfA; conserved membrane protein of unknown function, UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein
D NIDE3779 protein of unknown function K09771 TC.SMR3; small multidrug resistance family-3 protein
D NIDE3253 chaA; Calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter
D NIDE0535 Ca2+/Na+ antiporter K07301 yrbG; cation:H+ antiporter
D NIDE3752 putative Sodium/calcium antiporter K07301 yrbG; cation:H+ antiporter
D NIDE3622 putative Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D NIDE3945 nhaP; Na+/H+ antiporter K03316 nhaP; Na+:H+ antiporter
D NIDE0872 ybaL; uncharacterised monovalent cation:proton antiporter, CPA2 family K26735 KEA4_5_6; K+:H+ antiporter
D NIDE4168 putative Glutathione-regulated potassium-efflux system K26735 KEA4_5_6; K+:H+ antiporter
D NIDE2106 putative High-affinity nickel/cobalt transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D NIDE3708 putative Arsenite resistance protein ArsB K03325 ACR3; arsenite transporter
D NIDE4329 mviN; Virulence factor MviN homolog K03980 murJ; putative peptidoglycan lipid II flippase
D NIDE2710 mviN; Virulence factor mviN homolog K03980 murJ; putative peptidoglycan lipid II flippase
D NIDE3664 putative AEC-type transporter K24180 mleP; malate permease and related proteins
D NIDE3167 kup; Low affinity potassium transport system protein Kup K03549 kup; KUP system potassium uptake protein
D NIDE1758 conserved membrane protein of unknown function, DUF125 K22736 VIT; vacuolar iron transporter family protein
D NIDE3905 conserved membrane protein of unknown function DUF125 K22736 VIT; vacuolar iron transporter family protein
D NIDE3403 conserved membrane protein of unknown function, MarC-related K05595 marC; multiple antibiotic resistance protein
D NIDE0760 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D NIDE2676 conserved membrane protein of unknown function K15383 K15383; MtN3 and saliva related transmembrane protein
D NIDE1031 putative Protein TonB K03832 tonB; periplasmic protein TonB
D NIDE2189 putative Protein TonB K03832 tonB; periplasmic protein TonB
D NIDE0628 putative TonB protein K03832 tonB; periplasmic protein TonB
D NIDE2166 putative Protein TonB K03832 tonB; periplasmic protein TonB
D NIDE3359 pal; Peptidoglycan-associated lipoprotein Pal (modular protein) K03640 pal; peptidoglycan-associated lipoprotein
D NIDE2439 putative Peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein
D NIDE0460 exported protein of unknown function, OmpA family K03640 pal; peptidoglycan-associated lipoprotein
D NIDE0942 exported protein of unknown function, OmpA family K03640 pal; peptidoglycan-associated lipoprotein
D NIDE3360 tolB; Protein TolB precursor K03641 tolB; TolB protein
D NIDE3266 hppA; Pyrophosphate-energized proton pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D NIDE0851 ccdA; Cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D NIDE3237 nxrA1; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3255 nxrA2; putative Nitrate oxidoreductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3236 nxrB1; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3256 nxrB2; putative Nitrate oxidoreductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D NIDE3704 aoxA; Arsenite oxidase, small subunit K08355 aoxA; arsenite oxidase small subunit [EC:1.20.2.1 1.20.9.1]
D NIDE3705 aoxB; Arsenite oxidase, large subunit K08356 aoxB; arsenite oxidase large subunit [EC:1.20.2.1 1.20.9.1]
D NIDE3239 putative Multidrug resistance protein A (modular protein) K03543 emrA; membrane fusion protein, multidrug efflux system
D NIDE3250 putative Heavy metal efflux system, membrane fusion protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D NIDE3756 putative Cation efflux system protein CzcB K15727 czcB; membrane fusion protein, heavy metal efflux system
D NIDE1803 putative Acriflavine resistance protein A K15727 czcB; membrane fusion protein, heavy metal efflux system
D NIDE2548 putative RND-type efflux transporter, membrane fusion protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D NIDE1766 putative Cation efflux system protein CzcB K15727 czcB; membrane fusion protein, heavy metal efflux system
D NIDE3456 putative Type I secretion membrane fusion protein HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D NIDE3475 ttgA; RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2164 putative Multidrug efflux transporter, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3494 putative RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE1686 putative Membrane-fusion protein of multidrug efflux transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3917 RND-type efflux transporter, membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2721 putative Secretion protein HlyD family precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3138 conserved protein of unknown function K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2964 Multidrug efflux transporter, membrane fusion protein K19586 oqxA; membrane fusion protein, multidrug efflux system
D NIDE3529 mdtA; Multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D NIDE2711 putative Tyrosine-protein kinase Etk K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NIDE2896 putative Lipopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NIDE2409 putative Exopolysaccharide biosynthesis related tyrosine-protein kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D NIDE2408 putative Lipopolysaccharide biosynthesis protein K25590 epsF; protein tyrosine kinase modulator
D NIDE0054 yedX; Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:nde02044]
D NIDE3457 hlyB; Type I secretion system ATPase HlyB K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NIDE3456 putative Type I secretion membrane fusion protein HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE3626 protein of unknown function, putative ATPase K02450 gspA; general secretion pathway protein A
D NIDE2411 conserved protein of unknown function, putative fused AAA-type ATPase and TPR-like protein (modular protein) K02450 gspA; general secretion pathway protein A
D NIDE2830 putative General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D NIDE0685 putative General secretion pathway protein G (modular Protein) K02456 gspG; general secretion pathway protein G
D NIDE2817 gspG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE2828 gspG2; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE2829 gspG3; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NIDE4102 pilD; Type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NIDE3438 pilA; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE3439 pilA2; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE2825 gspE; General secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D NIDE2826 gspF; General secretion pathway protein F K02653 pilC; type IV pilus assembly protein PilC
D NIDE0777 pilC; Type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D NIDE3352 putative Type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D NIDE2657 putative Chemotaxis regulator CheY K02658 pilH; twitching motility two-component system response regulator PilH
D NIDE2655 putative Methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D NIDE1348 pilM; Type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NIDE1349 putative Type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D NIDE1350 putative Type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D NIDE1351 putative Type IV pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NIDE1352 putative Type IV pili biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D NIDE3448 pilT1; Twitching mobility protein PilT K02669 pilT; twitching motility protein PilT
D NIDE3449 pilT2; Twitching mobility protein PilT K02670 pilU; twitching motility protein PilU
D NIDE4095 putative Type IV pilus assembly protein PilV K02671 pilV; type IV pilus assembly protein PilV
D NIDE4094 putative Type IV pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
D NIDE4091 putative Type IV pilus assembly protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D NIDE0258 protein of unknown function K02676 pilZ; type IV pilus assembly protein PilZ
D NIDE0257 protein of unknown function K02676 pilZ; type IV pilus assembly protein PilZ
D NIDE4101 conserved protein of unknown function, putative Fimbrial protein PilA K08084 fimT; type IV fimbrial biogenesis protein FimT
D NIDE2118 putative Prepilin peptidase CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D NIDE2117 cpaB; Pilus assembly protein CpaB (modular protein) K02279 cpaB; pilus assembly protein CpaB
D NIDE2116 putative Pilus assembly protein CpaC K02280 cpaC; pilus assembly protein CpaC
D NIDE2112 putative Pilus assembly ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D NIDE2111 cpaF; Pilus assembly ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D NIDE2110 tadB; Pilus assembly protein TadB K12510 tadB; tight adherence protein B
D NIDE2109 tadC; Pilus assembly protein TadC K12511 tadC; tight adherence protein C
D NIDE0771 conserved protein of unknown function, YggT family K02221 yggT; YggT family protein
D NIDE2726 protein of unknown function, contains DNA-binding helix-hairpin-helix region K02237 comEA; competence protein ComEA
D NIDE2734 putative Competence protein ComEC/Rec2 related protein K02238 comEC; competence protein ComEC
D NIDE2306 flhA; Flagellar biosynthetic protein FlhA, export component K02400 flhA; flagellar biosynthesis protein FlhA
D NIDE2305 flhB; Flagellar biosynthetic protein FlhB, export component K02401 flhB; flagellar biosynthesis protein FlhB
D NIDE2288 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D NIDE2290 putative Flagellar biosynthesis protein FliH with response regulator receiver domain (modular protein) K02411 fliH; flagellar assembly protein FliH
D NIDE2291 fliI; ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NIDE2300 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D NIDE2301 putative Flagellar biosynthetic protein FliO, export component K02418 fliO; flagellar protein FliO/FliZ
D NIDE2302 fliP; Flagellar biosynthetic protein FliP, export component K02419 fliP; flagellar biosynthesis protein FliP
D NIDE2303 fliQ; Flagellar biosynthetic protein FliQ, export component K02420 fliQ; flagellar biosynthesis protein FliQ
D NIDE2304 fliR; Flagellar biosynthetic protein FliR, export component K02421 fliR; flagellar biosynthesis protein FliR
D NIDE1973 conserved membrane protein of unknown function, IcmF-related K11891 impL; type VI secretion system protein ImpL
D NIDE1972 conserved protein of unknown function, COG3455 K11892 impK; type VI secretion system protein ImpK
D NIDE1971 conserved protein of unknown function, COG3522 K11893 impJ; type VI secretion system protein ImpJ
D NIDE1984 conserved protein of unknown function, COG3520 K11895 impH; type VI secretion system protein ImpH
D NIDE1983 conserved protein of unknown function, COG3519 K11896 impG; type VI secretion system protein ImpG
D NIDE1982 conserved protein of unknown function, COG3518 K11897 impF; type VI secretion system protein ImpF
D NIDE1978 conserved protein of unknown function, COG3517 K11900 impC; type VI secretion system protein ImpC
D NIDE2011 conserved protein of unknown function K11900 impC; type VI secretion system protein ImpC
D NIDE1977 conserved protein of unknown function, COG3516 K11901 impB; type VI secretion system protein ImpB
D NIDE1976 conserved protein of unknown function, COG3515 K11902 impA; type VI secretion system protein ImpA
D NIDE1979 conserved protein of unknown function, COG3157 K11903 hcp; type VI secretion system secreted protein Hcp
D NIDE1987 conserved protein of unknown function, Rhs element Vgr protein family K11904 vgrG; type VI secretion system secreted protein VgrG
D NIDE1970 conserved protein of unknown function, COG3521 K11906 vasD; type VI secretion system protein VasD
D NIDE1985 clpV1; Type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D NIDE1974 protein of unknown function, COG3913 K11890 impM; type VI secretion system protein ImpM
D NIDE1969 conserved protein of unknown function, contains FHA domain K11894 impI; type VI secretion system protein ImpI
D NIDE1975 conserved protein of unknown function, ImpE/SciE-like K11898 impE; type VI secretion system protein ImpE
D NIDE0623 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE2722 secA; Protein translocase, subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NIDE3287 secD; Protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D NIDE1298 secE; Preprotein translocase, subunit SecE K03073 secE; preprotein translocase subunit SecE
D NIDE3286 secF; Protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D NIDE1104 secG; Preprotein translocase, membrane subunit SecG K03075 secG; preprotein translocase subunit SecG
D NIDE1331 secY; Preprotein translocase, membrane subunit SecY K03076 secY; preprotein translocase subunit SecY
D NIDE3074 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NIDE4087 ftsY; Cell division protein ftsY homolog K03110 ftsY; fused signal recognition particle receptor
D NIDE3288 yajC; Preprotein translocase, subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NIDE0360 oxaA; Inner-membrane protein insertion factor OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NIDE3273 tatA; Twin-arginine translocation protein TatA/E K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4074 putative Twin-arginine translocation protein TatA2 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE4075 tatA3; Twin-arginine translocation protein TatA3 K03116 tatA; sec-independent protein translocase protein TatA
D NIDE1681 tatC; Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D NIDE3343 tatC; Twin-arginine targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:nde02042]
D NIDE2035 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:nde02022]
D NIDE0857 putative Phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NIDE2412 Signal transduction response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NIDE2426 phoB; Phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NIDE0858 putative Phosphate regulon transcriptional regulatory protein phoB K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D NIDE2437 putative Phosphate regulon transcriptional regulatory protein PhoB K07776 regX3; two-component system, OmpR family, response regulator RegX3
D NIDE1261 putative Response Regulator K02483 K02483; two-component system, OmpR family, response regulator
D NIDE0807 putative Histidine kinase, containing PAS domain S-box K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D NIDE1489 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE1040 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE3091 Response regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NIDE0166 putative Histidine kinase with N-terminal NAD-binding region K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D NIDE3983 putative Histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D NIDE3246 putative Histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D NIDE3941 putative Sensor histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D NIDE1763 Response regulator, CheY like K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D NIDE0405 protein of unknown function, putative transcriptional regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D NIDE0947 putative transmembrane signal transduction receptor and sigma-54 dependent response regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D NIDE1222 Sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NIDE1223 Sigma-54 dependent DNA-binding response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D NIDE3939 Sensory sigma-54 dependent transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D NIDE3942 Sigma-54 dependent response regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D NIDE1256 Sigma-54 dependent DNA-binding response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1585 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1047 Sigma-54 dependent DNA-binding response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE1773 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE4271 Sigma-54 dependent response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3283 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3245 Sigma-54 dependent transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE3520 Sigma-54 dependent response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D NIDE0778 putative Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D NIDE0779 pilR; Transcriptional regulatory protein pilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D NIDE2265 putative Sensor histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NIDE2267 Sigma-54 dependent DNA-binding response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE2217 Sigma-54 dependent transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NIDE1255 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE3521 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE3586 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D NIDE3088 Sigma-54 dependent transcriptional regulator K02481 flgR; two-component system, NtrC family, response regulator
D NIDE2350 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2361 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2348 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2360 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE0240 Signal transduction response regulator, receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE3228 putative Response regulator, CheY-like K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2352 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2367 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2351 cheV; Chemotaxis signal transducer CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D NIDE2654 putative Chemotaxis protein CheA modulated with response regulator receiver region (modular protein) K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NIDE2657 putative Chemotaxis regulator CheY K02658 pilH; twitching motility two-component system response regulator PilH
D NIDE3753 Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE0222 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3963 putative Hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3052 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE3570 putative Hybrid sensor histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D NIDE2284 fleR; Sigma-54 dependent response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D NIDE2371 putative Phosphorelay protein, contains HPt domain K20976 hptB; histidine phosphotransfer protein HptB
D NIDE2119 putative Histidine kinase with protein phosphatase region K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D NIDE1227 Histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE0584 putative Histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE2323 putative Hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D NIDE1908 putative Sensor histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:nde02035]
D NIDE2350 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2361 cheA; Chemotaxis protein histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NIDE2354 cheW; Chemotaxis signal transducer CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2362 cheW; Chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2656 putative Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D NIDE2366 cheD; Chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D NIDE2347 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2365 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NIDE2352 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2367 cheB; Chemotaxis methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NIDE2348 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2360 cheY; Chemotaxis regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE0240 Signal transduction response regulator, receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE3228 putative Response regulator, CheY-like K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NIDE2349 putative Chemotaxis regulator CheZ K03414 cheZ; chemotaxis protein CheZ
D NIDE2351 cheV; Chemotaxis signal transducer CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D NIDE2353 putative Methyl-accepting chemotaxis protein (MCP) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2363 cheM; Globin-coupled methyl-accepting chemotaxis protein (modular protein) K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2359 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D NIDE2290 putative Flagellar biosynthesis protein FliH with response regulator receiver domain (modular protein) K02411 fliH; flagellar assembly protein FliH
D NIDE2291 fliI; ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NIDE2292 putative Flagellar biosynthesis protein FliJ K02413 fliJ; flagellar protein FliJ
D NIDE2301 putative Flagellar biosynthetic protein FliO, export component K02418 fliO; flagellar protein FliO/FliZ
D NIDE2302 fliP; Flagellar biosynthetic protein FliP, export component K02419 fliP; flagellar biosynthesis protein FliP
D NIDE2303 fliQ; Flagellar biosynthetic protein FliQ, export component K02420 fliQ; flagellar biosynthesis protein FliQ
D NIDE2304 fliR; Flagellar biosynthetic protein FliR, export component K02421 fliR; flagellar biosynthesis protein FliR
D NIDE2306 flhA; Flagellar biosynthetic protein FlhA, export component K02400 flhA; flagellar biosynthesis protein FlhA
D NIDE2305 flhB; Flagellar biosynthetic protein FlhB, export component K02401 flhB; flagellar biosynthesis protein FlhB
D NIDE2289 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NIDE2299 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NIDE2300 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D NIDE2288 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D NIDE2315 flgI; Flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D NIDE2313 putative Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D NIDE2314 flgH; Flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D NIDE2298 fliL; Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D NIDE2287 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NIDE2295 putative Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D NIDE2285 flgB; Flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D NIDE2286 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D NIDE2296 flgD; Flagellar hook capping protein FlgD (fragment) K02389 flgD; flagellar basal-body rod modification protein FlgD
D NIDE2311 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D NIDE2312 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D NIDE2316 putative Peptidoglycan hydrolase FlgJ (fragment) K02395 flgJ; peptidoglycan hydrolase FlgJ
D NIDE2297 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D NIDE2319 flgK; First flagellar hook-filament junction protein FlgK K02396 flgK; flagellar hook-associated protein 1
D NIDE2320 putative Second flagellar hook-filament junction protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D NIDE2339 fliC; Flagellin, class B K02406 fliC; flagellin
D NIDE2341 putative Flagellar capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D NIDE2342 fliS; Flagellin-specific chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D NIDE2309 fliA; Flagellar-specific RNA polymerase sigma 28 factor K02405 fliA; RNA polymerase sigma factor FliA
D NIDE2356 motA; Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D NIDE2357 motB; Flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D NIDE0266 putative Outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D NIDE0237 exported protein of unknown function K02557 motB; chemotaxis protein MotB
D NIDE2284 fleR; Sigma-54 dependent response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D NIDE2322 fliW; Flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW
D NIDE2317 flgM; Anti-sigma 28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D NIDE2340 flaG; Flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D NIDE2307 putative Flagellar biosynthetic protein FlhF, GTP binding K02404 flhF; flagellar biosynthesis protein FlhF
D NIDE2345 putative Septum site-determining protein MinD K04562 flhG; flagellar biosynthesis protein FlhG
D NIDE2308 fleN; Flagellar number regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG
D NIDE2657 putative Chemotaxis regulator CheY K02658 pilH; twitching motility two-component system response regulator PilH
D NIDE2655 putative Methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D NIDE2654 putative Chemotaxis protein CheA modulated with response regulator receiver region (modular protein) K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NIDE0779 pilR; Transcriptional regulatory protein pilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D NIDE0778 putative Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D NIDE3448 pilT1; Twitching mobility protein PilT K02669 pilT; twitching motility protein PilT
D NIDE3449 pilT2; Twitching mobility protein PilT K02670 pilU; twitching motility protein PilU
D NIDE3438 pilA; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE3439 pilA2; Type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D NIDE2825 gspE; General secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D NIDE2826 gspF; General secretion pathway protein F K02653 pilC; type IV pilus assembly protein PilC
D NIDE0777 pilC; Type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D NIDE4102 pilD; Type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NIDE3352 putative Type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D NIDE1352 putative Type IV pili biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D NIDE1351 putative Type IV pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NIDE1350 putative Type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D NIDE1349 putative Type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D NIDE1348 pilM; Type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NIDE0258 protein of unknown function K02676 pilZ; type IV pilus assembly protein PilZ
D NIDE0257 protein of unknown function K02676 pilZ; type IV pilus assembly protein PilZ
D NIDE4095 putative Type IV pilus assembly protein PilV K02671 pilV; type IV pilus assembly protein PilV
D NIDE4094 putative Type IV pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
D NIDE4091 putative Type IV pilus assembly protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D NIDE2118 putative Prepilin peptidase CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D NIDE2117 cpaB; Pilus assembly protein CpaB (modular protein) K02279 cpaB; pilus assembly protein CpaB
D NIDE2116 putative Pilus assembly protein CpaC K02280 cpaC; pilus assembly protein CpaC
D NIDE2112 putative Pilus assembly ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D NIDE2111 cpaF; Pilus assembly ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:nde04812]
D NIDE2493 conserved protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein
D NIDE1013 mreB; Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D NIDE0767 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NIDE0766 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NIDE0364 parA; Chromosomal partitioning ATPase ParA K03496 parA; chromosome partitioning protein
D NIDE0365 parB; Chromosomal partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:nde04147]
D NIDE2913 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NIDE1107 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NIDE1106 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NIDE2807 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE4286 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NIDE1378 groL; Chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NIDE1728 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D NIDE4028 hscA; Chaperone protein HscA (Hsc66) K04043 dnaK; molecular chaperone DnaK
D NIDE0356 putative Glucose-6-phosphate isomerase (modular protein) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NIDE1421 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NIDE1294 tufA; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE1309 tufB; Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D NIDE3786 putative Calcium-transporting ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13]
D NIDE0988 hinT; Purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NIDE3105 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3128 putative 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NIDE3104 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE3116 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NIDE0845 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NIDE1332 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NIDE1247 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NIDE0486 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NIDE0485 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NIDE2981 fbp; Fructose-1-6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NIDE4164 putative Formimidoyltransferase-cyclodeaminase K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D NIDE3768 putative 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NIDE3464 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NIDE1363 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NIDE2741 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NIDE0156 phhB; 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NIDE3443 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NIDE2574 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NIDE2727 lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NIDE0440 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D NIDE2203 zwf2; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE0468 zwf1; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NIDE1105 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NIDE0478 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NIDE3460 blc; Outer membrane lipoprotein Blc K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:nde02048]
D NIDE1548 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D NIDE1549 cas2; CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D NIDE1541 cas3; CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D NIDE1542 putative CRISPR-associated protein Cse1 K19123 casA; CRISPR system Cascade subunit CasA
D NIDE1544 putative CRISPR-associated protein Cse2 K19046 casB; CRISPR system Cascade subunit CasB
D NIDE1545 cse4; CRISPR-associated protein Cse4 K19124 casC; CRISPR system Cascade subunit CasC
D NIDE1546 cas5e; CRISPR-associated protein Cas5e K19125 casD; CRISPR system Cascade subunit CasD
D NIDE1547 cse3; CRISPR-associated protein Cse3 K19126 casE; CRISPR system Cascade subunit CasE
D NIDE2620 putative Type I restriction-modification system, restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NIDE1901 putative Type I restriction system, restriction protein HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NIDE0136 putative Type I restriction endonuclease, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NIDE2506 putative Type I restriction-modification system, site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NIDE2624 putative Type I restriction-modification system, specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NIDE1900 putative Type I restriction system, specificity protein HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NIDE2503 putative Type I restriction-modification system, specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NIDE0137 protein of unknown function, putative Type I restriction endonuclease, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NIDE2625 hsdM2; Type I restriction-modification system, methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NIDE1898 putative Type I restriction system, N-6 adenine-specific DNA methylase HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NIDE0139 hsdM; Type I restriction endonuclease, M subunit (modular protein) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NIDE2502 putative Type I restriction-modification system, N-6 adenine-specific DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NIDE3670 DNA modification methylase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D NIDE0709 conserved protein of unknown function K01156 res; type III restriction enzyme [EC:3.1.21.5]
D NIDE3208 protein of unknown function K07448 mrr; restriction system protein
D NIDE2509 mazF; Toxin MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NIDE2512 mazF2; Toxin MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NIDE2510 mazE; Antitoxin MazE K07172 mazE; antitoxin MazE
D NIDE4297 stbE; Addiction module toxin K06218 relE; mRNA interferase RelE/StbE
D NIDE1372 putative Cytotoxic translational repressor of toxin-antitoxin stability system K06218 relE; mRNA interferase RelE/StbE
D NIDE3689 putative Toxin YoeB K06218 relE; mRNA interferase RelE/StbE
D NIDE0458 relE2; RelE toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D NIDE0450 relE1; RelE toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D NIDE0449 relB1; RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
D NIDE0457 relB2; RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
D NIDE2382 yoeB; Addiction module toxin YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D NIDE2003 Addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D NIDE2383 yefM; Addiction module antitoxin yefM K19159 yefM; antitoxin YefM
D NIDE1373 yefM; Antitoxin of toxin-antitoxin stability system K19159 yefM; antitoxin YefM
D NIDE2004 Addiction module antitoxin, Axe/YefM family K19159 yefM; antitoxin YefM
D NIDE1556 putative Serine kinase HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NIDE0134 parE; Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D NIDE0711 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D NIDE3841 higB; Toxin of plasmid maintenance system K07334 higB-1; toxin HigB-1
D NIDE1719 putative Toxin of proteic killer gene system K07334 higB-1; toxin HigB-1
D NIDE2614 conserved protein of unknown function K07334 higB-1; toxin HigB-1
D NIDE3842 higA; Antitoxin of plasmid maintenance system K21498 higA-1; antitoxin HigA-1
D NIDE1720 putative Antidote of proteic killer gene system K21498 higA-1; antitoxin HigA-1
D NIDE2142 putative Antidote of proteic killer gene system K21498 higA-1; antitoxin HigA-1
D NIDE4393 conserved protein of unknown function, contains Ribbon-helix-helix domain K21495 fitA; antitoxin FitA
D NIDE0767 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NIDE1013 mreB; Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D NIDE4019 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NIDE4024 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:nde01504]
D NIDE3663 tetA; Tetracycline efflux transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D NIDE3475 ttgA; RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2164 putative Multidrug efflux transporter, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3494 putative RND efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE1686 putative Membrane-fusion protein of multidrug efflux transporter K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3917 RND-type efflux transporter, membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2721 putative Secretion protein HlyD family precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE3138 conserved protein of unknown function K03585 acrA; membrane fusion protein, multidrug efflux system
D NIDE2163 putative Multidrug efflux transporter K18138 acrB; multidrug efflux pump
D NIDE3474 ttgB; RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3493 putative RND efflux system, multidrug resistance protein K18138 acrB; multidrug efflux pump
D NIDE3491 oprM; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE3473 ttgC; RND efflux system, outer membrane factor lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D NIDE1685 putative Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D NIDE3915 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
D NIDE2718 putative Outer membrane efflux protein precursor K12340 tolC; outer membrane protein
D NIDE3198 putative Outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:nde03100]
D NIDEtRNA20 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA8 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NIDEtRNA4 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA17 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA38 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA40 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NIDEtRNA41 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NIDEtRNA31 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NIDEtRNA5 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D NIDEtRNA26 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NIDEtRNA25 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NIDEtRNA29 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NIDEtRNA27 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NIDEtRNA3 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA11 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NIDEtRNA23 tRNA-His K14226 tRNA-His; tRNA His
D NIDEtRNA14 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NIDEtRNA45 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA1 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA32 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NIDEtRNA22 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NIDEtRNA28 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NIDEtRNA19 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA7 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA43 tRNA-Met K14230 tRNA-Met; tRNA Met
D NIDEtRNA37 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NIDEtRNA24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA9 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA16 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NIDEtRNA35 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA39 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA2 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA36 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NIDEtRNA12 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA6 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA34 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NIDEtRNA13 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D NIDEtRNA10 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D NIDEtRNA42 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDEtRNA30 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDEtRNA44 tRNA-Val K14237 tRNA-Val; tRNA Val
D NIDE_16S_1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NIDErRNA1386600D 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NIDE_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D NIDE0700 putative Dihydroflavanol 4-reductase K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219]
D NIDE3106 conserved protein of unknown function K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D NIDE3886 putative Quinol-cytochrome c reductase, cytochrome c subunit K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D NIDE0469 msrA; Methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D NIDE4360 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D NIDE1889 msrB; Methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D NIDE3604 yqjG; putative Glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D NIDE3565 putative Ferredoxin-thioredoxin reductase, catalytic subunit K17892 FTRC; ferredoxin-thioredoxin reductase catalytic chain [EC:1.8.7.2]
D NIDE0057 ccpA; Cytochrome c551 peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D NIDE4060 ccpA2; Cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D NIDE1596 bcp; Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NIDE1202 putative Thiol peroxidase (modular protein) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NIDE1875 probable Peroxiredoxin K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NIDE0044 osmC; Peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D NIDE0010 conserved protein of unknown function, Pirin-like K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D NIDE1387 cld1; Chlorite dismutase K09162 cld; chlorite dismutase [EC:1.13.11.49]
D NIDE2455 putative Ferredoxin-NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D NIDE2447 putative Arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D NIDE3573 putative Glutaredoxin K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D NIDE3707 arsC; Arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D NIDE4265 hyfB; Formate hydrogenlyase, membrane subunit K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D NIDE4263 putative Formate hydrogenlyase, membrane subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D NIDE4262 hyfF; Formate hydrogenlyase, membrane subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D NIDE0212 cfa; Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D NIDE2871 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D NIDE0881 putative Carbamoyltransferase, NodU family K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D NIDE3348 putative Carbamoyltransferase, NodU family K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D NIDE0046 maa; Maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D NIDE3215 nat; Arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D NIDE2055 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D NIDE0342 conserved membrane protein of unknown function, Transglutaminase-like K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D NIDE4207 putative Glycosyl transferase, family 2 K21349 ggs; glucosylglycerate synthase [EC:2.4.1.268]
D NIDE2872 putative Glycosyl transferase, group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D NIDE3977 putative Deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D NIDE0532 conserved protein of unknown function, putative NCAIR mutase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D NIDE2088 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D NIDE1029 putative Thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D NIDE1377 glnEb; (Glutamate-ammonia-ligase) adenylyltransferase, subunit B K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D NIDE1376 putative (Glutamate-ammonia-ligase) adenylyltransferase, subunit A (modular protein) K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D NIDE2840 putative Reverse transcriptase (fragment) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D NIDE4384 ydiU; conserved protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D NIDE0497 putative Phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D NIDE4308 ybgC; Acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D NIDE1531 trpH; conserved protein of unknown function, PHP family Phosphoesterase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D NIDE2414 conserved protein of unknown function, Phosphoglycerate mutase family K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D NIDE0687 Response regulator with HD-GYP domain K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D NIDE1870 Response regulator with HD-GYP domain K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D NIDE2970 ycfH; Uncharacterized deoxyribonuclease, TatD-related K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NIDE4295 exported protein of unknown function, putative Staphylococcal nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D NIDE0124 Phage lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D NIDE1980 protein of unknown function, putative Lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D NIDE2589 def2; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NIDE1806 def1; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NIDE0599 putative Polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D NIDE0344 ATPase; putative Methanol dehydrogenase regulatory protein MoxR K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D NIDE2038 conserved protein of unknown function, putative AAA-5 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D NIDE2547 conserved protein of unknown function DUF62 K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D NIDE3617 conserved protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D NIDE4119 yjeF; conserved protein of unknown function, putative Carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D NIDE3731 conserved protein of unknown function, PP-loop superfamily K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D NIDE0534 conserved protein of unknown function, UPF0272 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D NIDE3745 Cation-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D NIDE3754 mgtA; Magnesium-transporting ATPase, P-type K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D NIDE3646 conserved protein of unknown function, contains CBS domain pair K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D NIDE4025 iscU; Iron-sulfur cluster assembly protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D NIDE3564 protein of unknown function, contains von Willebrand factor K02448 norD; nitric oxide reductase NorD protein
D NIDE3569 putative Regulatory protein, cbbQ/nirQ/norQ/gpvN family K04748 norQ; nitric oxide reductase NorQ protein
D NIDE3280 napG; Ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG
D NIDE2068 conserved protein of unknown function, DUF1458 K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D NIDE0769 yggS; conserved protein of unknown function, UPF0001 K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D NIDE3340 mobB; Molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
D NIDE0008 conserved membrane protein of unknown function, DoxX family K15977 K15977; putative oxidoreductase
D NIDE0036 conserved membrane protein of unknown function, DoxX family K15977 K15977; putative oxidoreductase
D NIDE4382 putative Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D NIDE2641 cspA; Cold shock protein CspA K03704 cspA; cold shock protein
D NIDE1361 glnB; Nitrogen regulatory protein PII K04752 glnK; nitrogen regulatory protein P-II 2
D NIDE3165 tex; predicted Transcriptional accessory protein K06959 tex; protein Tex
D NIDE4369 conserved protein of unknown function, putative Transcriptional regulator K07743 K07743; transcriptional regulator
C 99974 Translation
D NIDE0325 putative RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D NIDE1850 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D NIDE0262 tig; Trigger factor (TF) K03545 tig; trigger factor
D NIDE0007 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D NIDE2260 yifB; putative ATP-dependent protease, Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D NIDE3334 protein of unknown function K07394 K07394; SM-20-related protein
D NIDE3885 conserved protein of unknown function, OsmC-like K07397 yhfA; putative redox protein
D NIDE0847 putative Cytochrome c biogenesis protein, ResB-like K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D NIDE0129 putative DNA methylase, containing Zn-ribbon K07445 K07445; putative DNA methylase
D NIDE2507 radC; DNA repair protein RadC homolog K03630 radC; DNA repair protein RadC
D NIDE2563 radC2; DNA repair protein RadC homolog K03630 radC; DNA repair protein RadC
D NIDE0498 putative DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D NIDE3068 conserved protein of unknown function, UPF0102 K07460 yraN; putative endonuclease
D NIDE3656 putative Endonuclease K07461 K07461; putative endonuclease
D NIDE1019 smf; Protein SMF, putative DNA protecting protein DprA K04096 smf; DNA processing protein
D NIDE4217 conserved protein of unknown function K07474 xtmA; phage terminase small subunit
D NIDE3553 rarA; Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D NIDE0087 putative DNA primase, P4 family (phage related) K06919 K06919; putative DNA primase/helicase
D NIDE1916 conserved protein of unknown function K07501 K07501; 3'-5' exonuclease
D NIDE1783 protein of unknown function, putative Transposase (fragment) K07483 K07483; transposase
D NIDE2121 putative Transposase insN for insertion sequence element IS911 K07483 K07483; transposase
D NIDE2013 putative Transposase InsN for insertion sequence element IS911 K07483 K07483; transposase
D NIDE2844 putative Transposase (fragment) K07483 K07483; transposase
D NIDE1834 Transposase K07486 K07486; transposase
D NIDE2608 conserved protein of unknown function K07491 rayT; REP-associated tyrosine transposase
D NIDE2122 Transposase of IS3/IS150/IS904 family K07497 K07497; putative transposase
D NIDE2134 Transposase, IS3/IS911 family K07497 K07497; putative transposase
D NIDE0912 Transposase, IS3 family K07497 K07497; putative transposase
D NIDE1782 putative Transposase K07497 K07497; putative transposase
D NIDE2014 putative Transposase InsF for insertion sequence IS3 K07497 K07497; putative transposase
D NIDE3762 Transposase K07497 K07497; putative transposase
D NIDE3763 Transposase (N-terminal fragment) K07497 K07497; putative transposase
D NIDE0914 Transposase (C-terminal fragment) K07497 K07497; putative transposase
D NIDE1613 Transposase (N-terminal fragment) K07497 K07497; putative transposase
D NIDE0913 Transposase (N-terminal fragment) K07497 K07497; putative transposase
D NIDE2133 Transposase K07497 K07497; putative transposase
D NIDE2713 Transposase, IS3/IS911 family K07497 K07497; putative transposase
D NIDE2835 Transposase (C-terminal fragment) K07497 K07497; putative transposase
D NIDE2843 putative Transposase insO for insertion sequence element IS911A K07497 K07497; putative transposase
D NIDE2848 putative Transposase (fragment) K07497 K07497; putative transposase
D NIDE2705 Transposase (fragment) K07497 K07497; putative transposase
D NIDE2706 Transposase (fragment) K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D NIDE0279 ybaB; conserved protein of unknown function, UPF0133 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D NIDE0250 yeeF; Amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D NIDE2208 conserved membrane protein of unknown function, putative MFS transport permease K03301 TC.AAA; ATP:ADP antiporter, AAA family
D NIDE0856 pit; probable Low-affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D NIDE3702 putative Inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D NIDE3595 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
C 99978 Cell growth
D NIDE2336 conserved protein of unknown function K06320 cgeB; spore maturation protein CgeB
D NIDE1152 putative Allophanate hydrolase, subunit 2 K06350 kipA; antagonist of KipI
D NIDE1154 putative Allophanate hydrolase, subunit 1 K06351 kipI; inhibitor of KinA
D NIDE4222 protein of unknown function K06376 spo0E; stage 0 sporulation regulatory protein
D NIDE3065 putative Murein hydrolase EnvC K22719 envC; murein hydrolase activator
C 99993 Cell motility
D NIDE1647 conserved exported protein of unknown function K07337 K07337; penicillin-binding protein activator
D NIDE3682 conserved protein of unknown function, TfoX-like K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D NIDE0747 cstA; Carbon starvation protein K06200 cstA; carbon starvation protein
D NIDE4031 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D NIDE4089 phoL; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D NIDE0748 yajQ; conserved protein of unknown function, nucleotide-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D NIDE0540 putative Outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D NIDE4185 putative VacJ-like lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D NIDE2197 putative Periplasmic chaperone Skp K06142 hlpA; outer membrane protein
D NIDE3043 putative Outer membrane chaperone Skp precursor K06142 hlpA; outer membrane protein
D NIDE0676 putative Outer membrane lipoprotein Slp K07285 slp; outer membrane lipoprotein
D NIDE1430 putative Outer membrane lipoprotein, Slp family K07285 slp; outer membrane lipoprotein
D NIDE2422 putative Outer membrane lipoprotein, Slp family K07285 slp; outer membrane lipoprotein
D NIDE0277 protein of unknown function; AsmA family K07289 asmA; AsmA protein
D NIDE4311 conserved exported protein of unknown function DUF107 K07340 ybbJ; inner membrane protein
D NIDE3943 RND-type efflux transporter, membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
D NIDE1082 macA; Efflux transporter, RND family, MFP subunit, putative Macrolide-specific efflux protein K02005 ABC.CD.TX; HlyD family secretion protein
D NIDE3323 putative Membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
D NIDE2765 protein of unknown function K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D NIDE3351 conserved protein of unknown function, putative Transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D NIDE2416 phoU; Phosphate transport system protein PhoU K02039 phoU; phosphate transport system protein
D NIDE3257 putative Bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D NIDE3715 cutA; Divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D NIDE3156 putative Transcriptional regulator ModE K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D NIDE2577 conserved membrane protein of unknown function, NnrS family K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D NIDE0437 Hemoglobin-like protein K06886 glbN; hemoglobin
D NIDE3686 glbN; Hemoglobin-like protein HbN (modular protein) K06886 glbN; hemoglobin
D NIDE4376 conserved protein of unknown function, Patatin-like K07001 K07001; NTE family protein
D NIDE3101 putative Patatin-like phospholipase K07001 K07001; NTE family protein
D NIDE1736 Haloacid dehalogenase, subfamily IA K07025 K07025; putative hydrolase of the HAD superfamily
D NIDE1460 erpA; Iron-sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein
D NIDE3558 erpA2; Iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D NIDE0601 putative tRNA-processing ribonuclease BN K07058 K07058; membrane protein
D NIDE3860 putative Phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D NIDE1923 conserved protein of unknown function, putative Hydrolase K07100 K07100; putative phosphoribosyl transferase
D NIDE4332 conserved exported protein of unknown function, LemA-like K03744 lemA; LemA protein
D NIDE3500 conserved exported protein of unknown function, LemA family K03744 lemA; LemA protein
D NIDE0695 conserved membrane protein of unknown function, DUF360 K08972 K08972; putative membrane protein
D NIDE2364 conserved membrane protein of unknown function K08976 K08976; putative membrane protein
D NIDE3803 yjdF; conserved membrane protein of unknown function K08984 yjdF; putative membrane protein
D NIDE3804 conserved membrane protein of unknown function K08984 yjdF; putative membrane protein
D NIDE4330 conserved protein of unknown function DUF477 K08988 K08988; putative membrane protein
C 99997 Function unknown
D NIDE0053 yahD; conserved protein of unknown function, contains Ankyrin repeats K06867 K06867; uncharacterized protein
D NIDE0308 protein of unknown function, contains Ankyrin and Tetratricopeptide repeats K06867 K06867; uncharacterized protein
D NIDE4331 conserved membrane protein of unknown function DUF477 K06872 K06872; uncharacterized protein
D NIDE1828 conserved exported protein of unknown function, DUF477 K06872 K06872; uncharacterized protein
D NIDE3049 conserved protein of unknown function, contains HD domain K06885 K06885; uncharacterized protein
D NIDE2440 conserved protein of unknown function (modular protein) K06888 K06888; uncharacterized protein
D NIDE4187 putative Peptidase K06889 K06889; uncharacterized protein
D NIDE2234 conserved protein of unknown function, putative Baseplate assembly protein W (GpW) K06903 W; Bacteriophage baseplate protein W
D NIDE2219 putative Phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D NIDE4359 yccU; conserved protein of unknown function, CoA binding protein K06929 K06929; uncharacterized protein
D NIDE0210 putative Flavin-containing amine oxidase K06954 K06954; uncharacterized protein
D NIDE2971 conserved protein of unknown function DUF901 K06962 K06962; uncharacterized protein
D NIDE4323 putative Glyoxalase K06991 K06991; uncharacterized protein
D NIDE3485 conserved protein of unknown function, Glyoxalase-like K06996 K06996; uncharacterized protein
D NIDE3164 conserved protein of unknown function, FMN-binding K07006 K07006; uncharacterized protein
D NIDE0965 putative Hydrolase, alpha/beta fold family K07019 K07019; uncharacterized protein
D NIDE3808 putative FeS assembly protein SufBD K07033 K07033; uncharacterized protein
D NIDE1910 conserved membrane protein of unknown function K07034 K07034; uncharacterized protein
D NIDE1184 putative Amidohydrolase K07045 K07045; uncharacterized protein
D NIDE1431 ypfJ; conserved protein of unknown function, neutral zinc metallopeptidase family K07054 K07054; uncharacterized protein
D NIDE0285 conserved protein of unknown function, DUF132 K07063 K07063; uncharacterized protein
D NIDE0198 yfcH; conserved protein of unknown function, NAD(P)-binding Rossmann-fold domain K07071 K07071; uncharacterized protein
D NIDE3856 conserved protein of unknown function K07074 K07074; uncharacterized protein
D NIDE3920 conserved membrane protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D NIDE4078 conserved membrane protein of unknown function, putative ABC-type transport system, permease component K07090 K07090; uncharacterized protein
D NIDE3961 conserved protein of unknown function, putative Phosphohydrolase K07097 K07097; uncharacterized protein
D NIDE0525 putative Metallophosphoesterase K07098 K07098; uncharacterized protein
D NIDE0025 putative NADH-flavin reductase K07118 K07118; uncharacterized protein
D NIDE2127 putative Short-chain dehydrogenase/reductase family protein K07124 K07124; uncharacterized protein
D NIDE2590 exported protein of unknown function, contains Sel1-like repeats K07126 K07126; uncharacterized protein
D NIDE0660 conserved protein of unknown function, putative AAA+ superfamily ATPase K07133 K07133; uncharacterized protein
D NIDE3532 conserved protein of unknown function, contains MOSC domain K07140 K07140; MOSC domain-containing protein
D NIDE0518 putative Peptidase S16, lon-like K07157 K07157; uncharacterized protein
D NIDE0991 conserved protein of unknown function, DUF164 K07164 K07164; uncharacterized protein
D NIDE2751 conserved protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D NIDE2752 conserved protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D NIDE3368 conserved exported protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D NIDE3261 conserved protein of unknown function DUF192 K09005 K09005; uncharacterized protein
D NIDE4139 conserved exported protein of unknown function DUF192 K09005 K09005; uncharacterized protein
D NIDE1230 conserved protein of unknown function, YqeY family K09117 K09117; uncharacterized protein
D NIDE3837 conserved protein of unknown function DUF355 K09129 K09129; uncharacterized protein
D NIDE3568 conserved protein of unknown function DUF167 K09131 K09131; uncharacterized protein
D NIDE1592 conserved protein of unknown function, DUF369 K09143 K09143; uncharacterized protein
D NIDE0211 conserved protein of unknown function, DUF1365 K09701 K09701; uncharacterized protein
D NIDE0813 protein of unknown function, DUF309 K09763 K09763; uncharacterized protein
D NIDE4132 conserved protein of unknown function DUF503 K09764 K09764; uncharacterized protein
D NIDE1680 conserved protein of unknown function K09794 K09794; uncharacterized protein
D NIDE2379 conserved protein of unknown function DUF497 K09803 K09803; uncharacterized protein
D NIDE1770 conserved protein of unknown function K09822 K09822; uncharacterized protein
D NIDE4388 conserved protein of unknown function K09822 K09822; uncharacterized protein
D NIDE1648 conserved protein of unknown function K09859 K09859; uncharacterized protein
D NIDE0571 conserved membrane protein of unknown function, DUF486 K09922 K09922; uncharacterized protein
D NIDE3048 conserved membrane protein of unknown function K09928 K09928; uncharacterized protein
D NIDE3958 conserved protein of unknown function K09930 K09930; uncharacterized protein
D NIDE3579 conserved protein of unknown function K09931 K09931; uncharacterized protein
D NIDE1073 conserved protein of unknown function, DUF1272 K09984 K09984; uncharacterized protein
D NIDE3571 protein of unknown function K01163 K01163; uncharacterized protein
D NIDE1591 conserved protein of unknown function K07502 yprB; uncharacterized protein
D NIDE0855 conserved protein of unknown function, DUF47 K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 12, 2024