+F Repair protein KO #

  DNA Repair and Recombination Proteins - Neorhizobium sp. NCHU2750

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NCHU2750_40530 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NCHU2750_19000 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NCHU2750_26420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NCHU2750_02240 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NCHU2750_05450 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NCHU2750_29700 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D NCHU2750_01790 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D NCHU2750_33000 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCHU2750_03820 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCHU2750_40940 dut; deoxyuridine 5''-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NCHU2750_40530 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NCHU2750_29720 ada; 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NCHU2750_19150 transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NCHU2750_19000 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NCHU2750_37600 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E NCHU2750_26420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NCHU2750_08690 dpo; DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NCHU2750_22380 dpo; DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NCHU2750_33260 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E NCHU2750_02240 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NCHU2750_05450 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NCHU2750_03670 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NCHU2750_41120 mutM; 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NCHU2750_29700 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NCHU2750_35070 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NCHU2750_21520 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E NCHU2750_15630 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NCHU2750_21190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NCHU2750_39120 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NCHU2750_17610 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E NCHU2750_16440 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E NCHU2750_10440 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E NCHU2750_20980 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCHU2750_28580 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCHU2750_39120 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E NCHU2750_21190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NCHU2750_13650 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NCHU2750_13660 rpoC; DNA-directed RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NCHU2750_13980 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NCHU2750_09110 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NCHU2750_18740 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NCHU2750_00260 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E NCHU2750_04090 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E NCHU2750_40450 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NCHU2750_04790 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E NCHU2750_58050 exoX; exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E NCHU2750_12950 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NCHU2750_40830 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NCHU2750_10280 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E NCHU2750_37140 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NCHU2750_17810 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NCHU2750_37280 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NCHU2750_21160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NCHU2750_53770 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NCHU2750_38840 dnaX; DNA polymerase III tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NCHU2750_21190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NCHU2750_20980 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCHU2750_28580 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCHU2750_17620 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NCHU2750_17510 recA; recombination protein K03553 recA; recombination protein RecA E NCHU2750_26920 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E NCHU2750_26890 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NCHU2750_26950 ruvC; holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NCHU2750_34100 priA; primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E NCHU2750_17510 recA; recombination protein K03553 recA; recombination protein RecA E NCHU2750_09890 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E NCHU2750_38960 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E NCHU2750_18760 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NCHU2750_15630 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NCHU2750_09270 recO; DNA recombination protein K03584 recO; DNA repair protein RecO (recombination protein O) E NCHU2750_38800 recR; recombination protein K06187 recR; recombination protein RecR E NCHU2750_21210 recN; DNA recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) E NCHU2750_26920 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E NCHU2750_26890 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NCHU2750_26950 ruvC; holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E NCHU2750_37470 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E NCHU2750_37480 addB; ATP-dependent helicase/nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E NCHU2750_07080 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E NCHU2750_58320 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_58330 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_58920 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_58930 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_53730 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_53750 ku; DNA repair protein K10979 ku; DNA end-binding protein Ku E NCHU2750_58090 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E NCHU2750_58310 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E NCHU2750_53740 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E NCHU2750_53810 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NCHU2750_17650 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NCHU2750_37350 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NCHU2750_30390 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F NCHU2750_13110 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NCHU2750_59240 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F NCHU2750_11480 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F NCHU2750_56640 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NCHU2750_15630 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NCHU2750_09270 recO; DNA recombination protein K03584 recO; DNA repair protein RecO (recombination protein O) F NCHU2750_38800 recR; recombination protein K06187 recR; recombination protein RecR F NCHU2750_21190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F NCHU2750_11110 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F NCHU2750_00150 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F NCHU2750_36190 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NCHU2750_17610 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F NCHU2750_16440 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NCHU2750_53790 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D NCHU2750_13000 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D NCHU2750_47860 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D NCHU2750_17510 recA; recombination protein K03553 recA; recombination protein RecA D NCHU2750_20020 lexA; LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D NCHU2750_21210 recN; DNA recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) D NCHU2750_58140 imuA; damage-inducible mutagenesis protein K14160 imuA; protein ImuA D NCHU2750_56330 imuA; damage-inducible mutagenesis protein K14160 imuA; protein ImuA D NCHU2750_53820 imuA; damage-inducible mutagenesis protein K14160 imuA; protein ImuA D NCHU2750_36870 imuA; damage-inducible mutagenesis protein K14160 imuA; protein ImuA D NCHU2750_58150 imuB; nucleotidyltransferase K14161 imuB; protein ImuB D NCHU2750_56340 imuB; nucleotidyltransferase K14161 imuB; protein ImuB D NCHU2750_53830 imuB; nucleotidyltransferase K14161 imuB; protein ImuB D NCHU2750_36860 imuB; nucleotidyltransferase K14161 imuB; protein ImuB D NCHU2750_58160 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NCHU2750_56350 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NCHU2750_53840 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NCHU2750_36850 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NCHU2750_17620 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NCHU2750_17720 recX; regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NCHU2750_01330 lhr; large ATP-dependent helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D NCHU2750_33000 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCHU2750_03820 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCHU2750_40940 dut; deoxyuridine 5''-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NCHU2750_14190 ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024