+E Ribosome biogenesis KO
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Ribosome Biogenesis - Nitrosomonas eutropha
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Neut_1778 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D Neut_2290 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Neut_1777 GTP-binding protein Era K03595 era; GTPase
C Neut_0957 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Neut_1117 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C Neut_0882 transcriptional regulator, TraR/DksA family protein K06204 dksA; RNA polymerase-binding transcription factor
C Neut_1647 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Neut_2518 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C Neut_1800 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Neut_1219 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Neut_0390 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Neut_2280 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Neut_2342 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Neut_1049 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Neut_2436 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Neut_0254 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Neut_0843 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Neut_1660 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Neut_1618 23S rRNA Gm-2251 2'-O-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Neut_0997 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Neut_1612 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Neut_1512 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Neut_2171 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Neut_0592 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Neut_1706 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Neut_1230 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Neut_2203 Pseudouridine synthase, Rsu K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D Neut_0005 ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C Neut_1297 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Neut_0444 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Neut_1389 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Neut_1898 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C Neut_0593 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C Neut_1778 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Neut_1707 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
C Neut_1614 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
C Neut_0449 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C Neut_1777 GTP-binding protein Era K03595 era; GTPase
C Neut_2287 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Neut_2164 small GTP-binding protein K03977 engA; GTPase
C Neut_0957 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-]
C Neut_0962 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C Neut_2320 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Neut_1601 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Neut_1645 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Neut_1648 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Neut_1611 iojap-like protein K09710 ybeB; ribosome-associated protein
C Neut_1787 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C Neut_0996 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
C Neut_0689 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
C Neut_2304 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
C Neut_1143 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C Neut_0473 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024