+D
#
Spliceosome - Nannochloropsis gaditana
%
!
ACommon components
B Common spliceosomal components
C Cap binding complex
C hnRNP proteins
C SR proteins
C General mRNP proteins
#
AComplex A
B U1 snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C U1 snRNP specific factors
C U1 related factors
B U2 snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C U2 snRNP specific factors
D NGA_0232600 SNRPB2; U2 small nuclear ribonucleoprotein B'' K11094 SNRPB2; U2 small nuclear ribonucleoprotein B''
D NGA_0492700 SF3A1; splicing factor 3A subunit 1 K12825 SF3A1; splicing factor 3A subunit 1
D NGA_0471300 SF3A3; splicing factor 3A subunit 3 K12827 SF3A3; splicing factor 3A subunit 3
D NGA_0723920 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0723910 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0331720 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
D NGA_0331710 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
C U2 related factors
D NGA_0191100 U2AF1; splicing factor U2AF 35 kDa subunit K12836 U2AF1; splicing factor U2AF 35 kDa subunit
D NGA_0085300 retinitis pigmentosa 9 (autosomal dominant) K19604 RP9; retinitis pigmentosa 9 protein
B Other components
C Complex A specific factors
D NGA_0334002 BUB3; cell cycle arrest protein BUB3 K02180 BUB3; cell cycle arrest protein BUB3
D NGA_0334001 BUB3; cell cycle arrest protein BUB3 K02180 BUB3; cell cycle arrest protein BUB3
D NGA_0419300 hypothetical protein K13095 SF1; splicing factor 1
#
AComplex B
B U1 snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C U1 snRNP specific factors
C U1 related factors
B U2 snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C U2 snRNP specific factors
D NGA_0232600 SNRPB2; U2 small nuclear ribonucleoprotein B'' K11094 SNRPB2; U2 small nuclear ribonucleoprotein B''
D NGA_0492700 SF3A1; splicing factor 3A subunit 1 K12825 SF3A1; splicing factor 3A subunit 1
D NGA_0471300 SF3A3; splicing factor 3A subunit 3 K12827 SF3A3; splicing factor 3A subunit 3
D NGA_0723920 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0723910 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0331720 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
D NGA_0331710 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
C U2 related factors
D NGA_0191100 U2AF1; splicing factor U2AF 35 kDa subunit K12836 U2AF1; splicing factor U2AF 35 kDa subunit
D NGA_0085300 retinitis pigmentosa 9 (autosomal dominant) K19604 RP9; retinitis pigmentosa 9 protein
B U4/U6.U5 tri-snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C LSm proteins
D NGA_0181000 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
C U4/U6 snRNP specific factors
D NGA_0094600 PPIH; peptidyl-prolyl isomerase H (cyclophilin H) K09567 PPIH; peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8]
D NGA_0448500 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C U5 snRNP specific factors
D NGA_2061700 SNRNP40; Prp8 binding protein K12857 SNRNP40; Prp8 binding protein
D NGA_0168600 DDX23; ATP-dependent RNA helicase DDX23/PRP28 K12858 DDX23; ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
C U4/U6.U5 tri-snRNP specific factors
C U4/U6.U5 tri-snRNP related factors
D NGA_2020400 deah (asp-glu-ala-his) box polypeptide 16 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
D NGA_0085300 retinitis pigmentosa 9 (autosomal dominant) K19604 RP9; retinitis pigmentosa 9 protein
B Other components
C Prp19 complex
D NGA_0587600 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D NGA_0587900 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D NGA_0167902 PLRG1; pleiotropic regulator 1 K12862 PLRG1; pleiotropic regulator 1
D NGA_0499110 CTNNBL1; beta-catenin-like protein 1 K12864 CTNNBL1; beta-catenin-like protein 1
D NGA_0449600 heat shock protein 70 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
C Prp19-related factors
D NGA_0680000 SNW1; SNW domain-containing protein 1 K06063 SNW1; SNW domain-containing protein 1
D NGA_0248201 SYF1; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
D NGA_0248202 SYF1; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
D NGA_0239720 myosin light chain kinase K12868 SYF2; pre-mRNA-splicing factor SYF2
D NGA_0056602 BUD31; bud site selection protein 31 K12873 BUD31; bud site selection protein 31
D NGA_0333700 coiled-coil domain-containing protein 12 K12871 CCDC12; coiled-coil domain-containing protein 12
D NGA_0377800 RBM22; pre-mRNA-splicing factor RBM22/SLT11 K12872 RBM22; pre-mRNA-splicing factor RBM22/SLT11
C RES complex
D NGA_0434700 u2 snrnp component ist3 K13107 RBMX2; RNA-binding motif protein, X-linked 2
C Complex B specific factors
D NGA_0692800 smu-1 suppressor of mec-8 and unc-52-like protein K13111 SMU1; WD40 repeat-containing protein SMU1
D NGA_0334600 ubiquitin-like protein 5 K13113 UBL5; ubiquitin-like protein 5
#
AComplex C
B U2 snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C LSm proteins
C U2 SnRNP specific factors
D NGA_0232600 SNRPB2; U2 small nuclear ribonucleoprotein B'' K11094 SNRPB2; U2 small nuclear ribonucleoprotein B''
D NGA_0492700 SF3A1; splicing factor 3A subunit 1 K12825 SF3A1; splicing factor 3A subunit 1
D NGA_0471300 SF3A3; splicing factor 3A subunit 3 K12827 SF3A3; splicing factor 3A subunit 3
D NGA_0723920 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0723910 SF3B2; splicing factor 3B subunit 2 K12829 SF3B2; splicing factor 3B subunit 2
D NGA_0331720 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
D NGA_0331710 SF3B4; splicing factor 3B subunit 4 K12831 SF3B4; splicing factor 3B subunit 4
B U4/U6.U5 tri-snRNP components
C Sm proteins
D NGA_0346820 SNRPD1; small nuclear ribonucleoprotein D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
C U5 SnRNP specific factors
D NGA_2061700 SNRNP40; Prp8 binding protein K12857 SNRNP40; Prp8 binding protein
D NGA_0168600 DDX23; ATP-dependent RNA helicase DDX23/PRP28 K12858 DDX23; ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
C U4/U6.U5 tri-SnRNP specific factors
C U4/U6.U5 tri-SnRNP related factors
D NGA_2020400 deah (asp-glu-ala-his) box polypeptide 16 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
D NGA_0085300 retinitis pigmentosa 9 (autosomal dominant) K19604 RP9; retinitis pigmentosa 9 protein
B Other components
C Prp19-CDC5 complex
D NGA_0587600 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D NGA_0587900 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D NGA_0499110 CTNNBL1; beta-catenin-like protein 1 K12864 CTNNBL1; beta-catenin-like protein 1
D NGA_0167902 PLRG1; pleiotropic regulator 1 K12862 PLRG1; pleiotropic regulator 1
D NGA_0449600 heat shock protein 70 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
C Prp19-related factors
D NGA_0680000 SNW1; SNW domain-containing protein 1 K06063 SNW1; SNW domain-containing protein 1
D NGA_0248201 SYF1; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
D NGA_0248202 SYF1; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
D NGA_0239720 myosin light chain kinase K12868 SYF2; pre-mRNA-splicing factor SYF2
D NGA_0056602 BUD31; bud site selection protein 31 K12873 BUD31; bud site selection protein 31
D NGA_0333700 coiled-coil domain-containing protein 12 K12871 CCDC12; coiled-coil domain-containing protein 12
D NGA_0377800 RBM22; pre-mRNA-splicing factor RBM22/SLT11 K12872 RBM22; pre-mRNA-splicing factor RBM22/SLT11
C RES complex
D NGA_0434700 u2 snrnp component ist3 K13107 RBMX2; RNA-binding motif protein, X-linked 2
C EJC/TREX
D NGA_0049302 MAGOH; protein mago nashi K12877 MAGOH; protein mago nashi
D NGA_0098800 rna-binding protein 8a K12876 RBM8A; RNA-binding protein 8A
C Step II factors
D NGA_0640100 CDC40; pre-mRNA-processing factor 17 K12816 CDC40; pre-mRNA-processing factor 17
D NGA_0446101 deah (asp-glu-ala-his) box polypeptide 35 K12818 DHX8; ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
D NGA_2007900 DHX38; pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 K12815 DHX38; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
C PPlases
C hnRNP proteins
D NGA_0169420 rna binding protein K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H
D NGA_0169410 rna binding protein K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H
C Complex C specific factors
D NGA_2046600 g patch domain-containing protein 1 K13123 GPATCH1; G patch domain-containing protein 1
D NGA_0474300 mitogen-activated protein kinase K13124 MORG1; mitogen-activated protein kinase organizer 1
D NGA_0402100 nitric oxide synthase interacting protein K13125 NOSIP; nitric oxide synthase-interacting protein
#
AOther splicing related proteins
B Proteins involved in snRNP biogenesis
C SMN complex factors
C Integrator complex
C Other proteins involved in snRNP biogenesis
B Minor spliceosome components
C Minor spliceosome specific factors
C Minor spliceosome associated proteins
B Spliceosome associated proteins (SAPs)
C hnRNP proteins
C SR proteins
C SR-related proteins
C TREX complex
C RNA helicase-like proteins
C RNA binding proteins (RBPs)
C Other SAPs
D NGA_0166900 kh domain protein K13210 FUBP; far upstream element-binding protein
D NGA_0401010 hypothetical protein K13210 FUBP; far upstream element-binding protein
D NGA_0049402 PPP1C; protein phosphatase 1, catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
D NGA_0353600 serine threonine-protein phosphatase pp1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
D NGA_2015400 PRMT5; protein arginine N-methyltransferase 5 K02516 PRMT5; type II protein arginine methyltransferase [EC:2.1.1.320]
D NGA_0462400 hypothetical protein K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1]
D NGA_0680100 hypothetical protein K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1]
D NGA_2100000 ania-6a type cyclin K23966 CCNL; cyclin L
#
ASplicing related RNAs
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 15, 2024