+E Ribosome biogenesis KO
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Ribosome Biogenesis - Neptunomonas japonica
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D NEJAP_3019 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D NEJAP_0197 RIO kinase 1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D NEJAP_3068 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C NEJAP_3018 era; GTP-binding protein Era K03595 era; GTPase
C NEJAP_3374 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C NEJAP_1505 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C NEJAP_3600 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C NEJAP_3617 nusA; utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C NEJAP_0392 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C NEJAP_3427 nusG; transcriptional antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D NEJAP_1581 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NEJAP_2754 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NEJAP_2900 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NEJAP_3609 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NEJAP_0777 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NEJAP_0019 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NEJAP_3610 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D NEJAP_0203 rsmD; 16S rRNA (guanine966-N2)-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NEJAP_0289 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NEJAP_0984 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NEJAP_3700 gidB; 16S rRNA (guanine527-N7)-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NEJAP_0951 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NEJAP_0947 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NEJAP_2882 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D NEJAP_3132 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D NEJAP_3000 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NEJAP_3624 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D NEJAP_1289 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D NEJAP_0503 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NEJAP_2215 23S rRNA (cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NEJAP_3446 23S rRNA (cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NEJAP_3339 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D NEJAP_2277 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase/23S rRNA (guanine2069-N7)-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D NEJAP_3035 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NEJAP_2090 rumA; 23S rRNA (uracil1939-C5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NEJAP_1611 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NEJAP_2091 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NEJAP_0879 rluB; 23S rRNA pseudouridine2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NEJAP_1633 rluC; 23S rRNA pseudouridine955/2504/2580 synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D NEJAP_3355 23S rRNA pseudouridine1911/1915/1917 synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NEJAP_3492 23S rRNA pseudouridine1911/1915/1917 synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NEJAP_2027 rluE; 23S rRNA pseudouridine2457 synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D NEJAP_0198 23S rRNA pseudouridine2605 synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C NEJAP_0543 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C NEJAP_1070 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C NEJAP_3547 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C NEJAP_0479 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C NEJAP_1780 ribosomal protein S12 methylthiotransferase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C NEJAP_2244 ribosomal protein S12 methylthiotransferase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C NEJAP_2976 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C NEJAP_1629 prmB; adenine-specific DNA-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C NEJAP_2045 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C NEJAP_3019 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C NEJAP_1632 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C NEJAP_2783 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C NEJAP_0285 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C NEJAP_1679 dbpA; ATP-independent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C NEJAP_2248 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C NEJAP_3018 era; GTP-binding protein Era K03595 era; GTPase
C NEJAP_3069 rsgA; ribosome biogenesis GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C NEJAP_3029 engA; GTP-binding protein K03977 engA; GTPase
C NEJAP_3374 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C NEJAP_1769 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C NEJAP_3052 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C NEJAP_0024 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C NEJAP_3510 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C NEJAP_3615 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C NEJAP_3618 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C NEJAP_0502 ybeB; ribosome-associated protein K09710 ybeB; ribosome-associated protein
C NEJAP_0531 ybeY; probable rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C NEJAP_3625 yhbY; RNA-binding protein K07574 yhbY; RNA-binding protein
C NEJAP_2780 yjgA; ribosome-associated protein K09889 yjgA; ribosome-associated protein
C NEJAP_2278 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
C NEJAP_1054 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C NEJAP_2775 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C NEJAP_3233 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C NEJAP_1349 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 18, 2025