+E Transcription factors KO #

  Transcription Factors - Nitrosospira multiformis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D Nmul_A2635 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Nmul_A1110 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Nmul_A1145 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Nmul_A1739 transcriptional regulator, LysR family K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D Nmul_A0687 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family C LacI family C GntR family D Nmul_A0801 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D Nmul_A0693 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Nmul_A1117 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D Nmul_A1967 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family C LuxR family C MarR family C MerR family C Fur family D Nmul_A0475 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Nmul_A2512 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D Nmul_A1773 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D Nmul_A0674 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Nmul_A0694 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Nmul_A1774 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family C PadR family C Other families D Nmul_A2082 Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Nmul_A0132 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Nmul_A2210 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D Nmul_A2211 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D Nmul_A1531 transcriptional regulator, XRE family K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D Nmul_A0841 conserved hypothetical protein K07726 K07726; putative transcriptional regulator D Nmul_A2160 hypothetical protein K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family D Nmul_A1234 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D Nmul_A1546 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Nmul_A0599 Helix-turn-helix protein, CopG K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D Nmul_A0325 Helix-turn-helix protein, CopG K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D Nmul_A2278 Protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Nmul_A2113 transcriptional regulator, BolA protein family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Nmul_A2767 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Nmul_A2465 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Nmul_A2423 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Nmul_A0938 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Nmul_A2480 Phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Nmul_A2182 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Nmul_A0932 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Nmul_A2478 Protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Nmul_A2552 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Nmul_A0025 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Nmul_A0005 Protein of unknown function DUF193 K07738 nrdR; transcriptional repressor NrdR D Nmul_A2503 Protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0