+D Transcription factors KO #

  Transcription Factors - Nitrosococcus oceani

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Noc_2104 DNA-O6-methylguanine--protein-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D Noc_1837 transcriptional regulatory protein, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Noc_2292 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Noc_0334 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family C LacI family C GntR family D Noc_0891 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D Noc_0199 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator C Lrp/AsnC family C LuxR family C MarR family C MerR family D Noc_2760 Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Noc_0203 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D Noc_1194 Ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Noc_2424 Ferric-uptake regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D Noc_0954 transcriptional regulatory protein, Crp family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Noc_1061 transcriptional regulatory protein, Crp family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family D Noc_1648 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Noc_1716 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Noc_2967 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family C PadR family C Other families D Noc_0188 Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Noc_1049 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Noc_2942 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Noc_2944 transcription regulator containing HTH domain-like protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Noc_2362 Sigma-54 specific, transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Noc_0283 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Noc_2738 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D Noc_1705 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D Noc_2387 transcriptional regulator, BolA protein family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Noc_3082 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Noc_A0014 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Noc_2484 Transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D Noc_2813 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Noc_2525 Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D Noc_1918 transcription elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Noc_0366 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Noc_0616 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Noc_0368 Protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Noc_0879 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Noc_1557 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D Noc_2010 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D Noc_2026 Protein of unknown function DUF193 K07738 nrdR; transcriptional repressor NrdR D Noc_2870 Protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0