+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Noviherbaspirillum sp. UKPF54
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D FAY22_11225 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C FAY22_05870 GTPase Era K03595 era; GTPase
C FAY22_13685 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C FAY22_14930 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C FAY22_05550 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C FAY22_03035 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C FAY22_04470 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C FAY22_20530 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D FAY22_08450 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D FAY22_00095 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D FAY22_15430 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D FAY22_02815 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D FAY22_14560 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D FAY22_11340 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D FAY22_18805 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D FAY22_13900 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D FAY22_15260 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D FAY22_05770 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D FAY22_09535 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D FAY22_10450 RlmE family RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D FAY22_00835 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D FAY22_14915 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D FAY22_05435 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D FAY22_13135 class I SAM-dependent RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D FAY22_09620 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D FAY22_01880 RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D FAY22_09645 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D FAY22_03025 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D FAY22_05750 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D FAY22_06080 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D FAY22_02955 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D FAY22_06275 rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C FAY22_07285 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C FAY22_02230 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C FAY22_06100 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C FAY22_04235 OsmC domain/YcaO domain-containing protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C FAY22_13575 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C FAY22_06215 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C FAY22_05210 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C FAY22_05745 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C FAY22_00825 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C FAY22_13455 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C FAY22_05870 GTPase Era K03595 era; GTPase
C FAY22_11240 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C FAY22_09585 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
C FAY22_13685 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C FAY22_12585 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C FAY22_09575 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C FAY22_12815 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C FAY22_05455 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C FAY22_03045 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
C FAY22_03030 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C FAY22_01240 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
C FAY22_00840 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
C FAY22_00145 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C FAY22_10455 YhbY family RNA-binding protein K07574 yhbY; RNA-binding protein
C FAY22_10860 DUF615 domain-containing protein K09889 yjgA; ribosome-associated protein
C FAY22_20875 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
C FAY22_07195 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
C FAY22_14535 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C FAY22_05780 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024