+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Novosphingobium sp. EMRT-2
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
E FA702_12770 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E FA702_05285 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12]
E FA702_16810 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E FA702_05130 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
E FA702_02035 VacB/RNase II family 3'-5' exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Helicases
E FA702_10650 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E FA702_00960 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E FA702_08655 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E FA702_04050 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E FA702_15565 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E FA702_16680 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E FA702_11350 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C Other RNA degradation factors
D Chaperones
E FA702_03135 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
E FA702_12285 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E FA702_02135 RNA chaperone Hfq K03666 hfq; host factor-I protein
D Others
E FA702_03910 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E FA702_08610 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
E FA702_08960 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E FA702_03690 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E FA702_16145 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
E FA702_04335 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024