+F Repair protein KO
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DNA Repair and Recombination Proteins - Natrinema pellirubrum
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Natpe_3292 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Natpe_0551 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Natpe_2281 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Natpe_2081 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Natpe_1204 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E Natpe_2789 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E Natpe_1632 putative endoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E Natpe_0139 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
E Natpe_3667 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
E Natpe_2793 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E Natpe_2230 ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Natpe_1279 DNA/RNA helicase, superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Natpe_3696 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Natpe_3871 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E Natpe_3439 single-stranded DNA-binding protein K07466 RFA1; replication factor A1
D Other NER factors
E Natpe_2230 ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E Natpe_3439 single-stranded DNA-binding protein K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E Natpe_0139 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
E Natpe_3667 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
E Natpe_2230 ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E Natpe_3439 single-stranded DNA-binding protein K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D Natpe_0139 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Natpe_3667 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Natpe_0465 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Natpe_0760 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Natpe_0516 deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Natpe_3292 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Natpe_0551 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Natpe_2281 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Natpe_0073 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Natpe_1036 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Natpe_2585 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Natpe_2162 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Natpe_2629 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Natpe_2081 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Natpe_2789 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E Natpe_1632 putative endoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Natpe_0794 apurinic endonuclease APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E Natpe_2042 deoxyinosine 3'endonuclease (endonuclease V) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Natpe_3796 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Natpe_0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Natpe_0625 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Natpe_0157 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E Natpe_0165 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E Natpe_0402 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Natpe_0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Natpe_0702 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Natpe_1624 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Natpe_1390 MutS domain V K07456 mutS2; DNA mismatch repair protein MutS2
E Natpe_0152 mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Natpe_0707 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
E Natpe_0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Natpe_0402 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Natpe_2780 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
E Natpe_2781 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Natpe_3796 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
E Natpe_4444 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Natpe_4310 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Natpe_0619 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Natpe_4445 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E Natpe_3765 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Natpe_1161 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB
E Natpe_0132 Holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
E Natpe_2780 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
E Natpe_2781 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
E Natpe_3833 superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Natpe_1507 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Natpe_1508 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Natpe_2833 topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F Natpe_0207 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Natpe_3796 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Natpe_0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Natpe_0625 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Natpe_0157 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Natpe_2062 nucleotidyltransferase/DNA polymerase involved in DNA repair K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
D Natpe_2046 DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X)
C DNA helicases
D Natpe_0818 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Natpe_0915 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Natpe_0465 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Natpe_0760 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Natpe_0516 deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Natpe_1146 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Natpe_1174 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Natpe_3545 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Natpe_0638 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D Natpe_1407 hypothetical protein K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024