+F Repair protein KO
#
DNA Repair and Recombination Proteins - Novosphingobium pentaromativorans
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D JI59_01305 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E JI59_11125 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E JI59_09225 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E JI59_13425 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D JI59_01790 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D JI59_13495 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D JI59_02685 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D JI59_01305 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E JI59_11125 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E JI59_01515 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E JI59_14290 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E JI59_09225 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E JI59_13465 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E JI59_13425 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E JI59_11670 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E JI59_07665 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E JI59_00480 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E JI59_01215 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E JI59_12440 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E JI59_15630 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E JI59_13335 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E JI59_02290 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E JI59_01410 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E JI59_12440 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
E JI59_01215 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F JI59_12375 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F JI59_12370 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F JI59_15485 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F JI59_05845 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F JI59_01965 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E JI59_11055 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E JI59_03965 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E JI59_11830 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E JI59_00545 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E JI59_01350 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E JI59_18985 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E JI59_18120 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E JI59_11150 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E JI59_03595 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E JI59_11640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E JI59_00180 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E JI59_18880 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E JI59_01215 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E JI59_01410 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E JI59_18635 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_26395 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_24015 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_06150 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_05285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_07520 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E JI59_04345 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E JI59_25740 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E JI59_01175 recombinase RecA K03553 recA; recombination protein RecA
E JI59_10105 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E JI59_10100 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E JI59_10115 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E JI59_02690 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E JI59_01175 recombinase RecA K03553 recA; recombination protein RecA
E JI59_03720 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E JI59_07150 recombinase RecF K03629 recF; DNA replication and repair protein RecF
E JI59_01980 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E JI59_00480 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E JI59_17950 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E JI59_02405 recombinase RecR K06187 recR; recombination protein RecR
E JI59_01205 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E JI59_10105 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E JI59_10100 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E JI59_10115 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E JI59_01885 ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E JI59_01880 helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E JI59_10220 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
E JI59_24270 AAA ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F JI59_03495 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F JI59_09980 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F JI59_01635 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F JI59_05675 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
F JI59_23815 integration host factor K03530 hupB; DNA-binding protein HU-beta
F JI59_26090 integration host factor K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F JI59_00480 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F JI59_17950 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F JI59_02405 recombinase RecR K06187 recR; recombination protein RecR
F JI59_01215 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F JI59_02770 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F JI59_10615 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F JI59_10075 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F JI59_15630 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F JI59_13335 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D JI59_14765 DNA repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D JI59_01175 recombinase RecA K03553 recA; recombination protein RecA
D JI59_03045 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D JI59_01205 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D JI59_19290 hypothetical protein K14160 imuA; protein ImuA
D JI59_19295 hypothetical protein K14161 imuB; protein ImuB
D JI59_19300 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D JI59_18635 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_26395 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_24015 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_06150 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_05285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_07520 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JI59_16015 hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D JI59_02785 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D JI59_10500 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D JI59_00220 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D JI59_01790 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D JI59_13495 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D JI59_12855 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D JI59_12875 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024