+D GENES KO #

  KEGG Orthology (KO) - Neorickettsia risticii

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:nri00010] D NRI_0568 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D NRI_0142 fructose-bisphosphate aldolase, class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D NRI_0245 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NRI_0410 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NRI_0411 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NRI_0858 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NRI_0354 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NRI_0768 pdhA; pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D NRI_0720 pdhB; pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D NRI_0910 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00020 Citrate cycle (TCA cycle) [PATH:nri00020] D NRI_0705 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D NRI_0573 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D NRI_0168 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D NRI_0553 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D NRI_0525 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0241 succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D NRI_0242 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D NRI_0359 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0360 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0511 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D NRI_0045 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D NRI_0054 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D NRI_0768 pdhA; pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D NRI_0720 pdhB; pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D NRI_0910 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:nri00030] D NRI_0329 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D NRI_0682 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D NRI_0733 transaldolase, putative K00616 TALDO1; transaldolase [EC:2.2.1.2] D NRI_0209 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D NRI_0782 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D NRI_0142 fructose-bisphosphate aldolase, class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D NRI_0568 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] C 00040 Pentose and glucuronate interconversions D NRI_0329 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:nri00051] D NRI_0568 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D NRI_0142 fructose-bisphosphate aldolase, class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D NRI_0245 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NRI_0209 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism C 00520 Amino sugar and nucleotide sugar metabolism D NRI_0565 putative UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] C 00620 Pyruvate metabolism [PATH:nri00620] D NRI_0768 pdhA; pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D NRI_0720 pdhB; pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D NRI_0910 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0399 NADP-dependent malic enzyme, N-terminal fragment K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D NRI_0400 NADP-dependent malic enzyme, C-terminal fragment K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D NRI_0054 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D NRI_0354 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:nri00630] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D NRI_0705 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D NRI_0573 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D NRI_0781 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D NRI_0763 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D NRI_0894 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0210 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00640 Propanoate metabolism [PATH:nri00640] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0781 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D NRI_0763 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D NRI_0242 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D NRI_0241 succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism D NRI_0359 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0360 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0511 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D NRI_0045 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit C 00660 C5-Branched dibasic acid metabolism D NRI_0242 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D NRI_0241 succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:nri00562] D NRI_0767 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D NRI_0245 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:nri00190] D NRI_0406 NADH dehydrogenase i, a subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D NRI_0407 NADH-quinone oxidoreductase chain b K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D NRI_0408 NADH-quinone oxidoreductase chain c 1 K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D NRI_0539 nuoD; NADH dehydrogenase (quinone), d subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D NRI_0607 NADH-quinone oxidoreductase chain e K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D NRI_0692 nuoF; NADH oxidoreductase (quinone), f subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D NRI_0051 nuoG; NADH dehydrogenase (quinone), g subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D NRI_0052 nuoH; NADH-quinone oxidoreductase chain h (nadh dehydrogenasei, chain h) (ndh-1, chain h) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D NRI_0787 NADH-quinone oxidoreductase subunit i K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D NRI_0010 NADH dehydrogenase i, j subunit K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D NRI_0011 NADH dehydrogenase i, k subunit K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D NRI_0013 NADH-quinone oxidoreductase chain l K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D NRI_0668 NADH-quinone oxidoreductase chain m K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D NRI_0669 NADH dehydrogenase i, n subunit K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D NRI_0359 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0360 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0511 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D NRI_0045 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D NRI_0595 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D NRI_0596 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D NRI_0597 petC; ubiquinol-Cytochrome c reductase, cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D NRI_0594 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D NRI_0652 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D NRI_0593 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D NRI_0592 coxB; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D NRI_0249 cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D NRI_0824 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D NRI_0448 cycM; cytochrome c family protein K08738 CYC; cytochrome c D NRI_0132 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D NRI_0735 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D NRI_0563 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D NRI_0133 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D NRI_0734 ATP synthase, Delta/Epsilon chain, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D NRI_0377 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D NRI_0379 ATP synthase F0, B' chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b D NRI_0378 conserved domain protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D NRI_0708 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:nri00710] D NRI_0411 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NRI_0410 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NRI_0142 fructose-bisphosphate aldolase, class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D NRI_0568 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D NRI_0682 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D NRI_0209 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D NRI_0245 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NRI_0329 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D NRI_0733 transaldolase, putative K00616 TALDO1; transaldolase [EC:2.2.1.2] D NRI_0354 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NRI_0399 NADP-dependent malic enzyme, N-terminal fragment K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D NRI_0400 NADP-dependent malic enzyme, C-terminal fragment K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:nri00720] D NRI_0354 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D NRI_0054 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D NRI_0359 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0360 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D NRI_0511 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D NRI_0045 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D NRI_0241 succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D NRI_0242 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D NRI_0168 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D NRI_0573 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D NRI_0790 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] C 00680 Methane metabolism [PATH:nri00680] D NRI_0210 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D NRI_0142 fructose-bisphosphate aldolase, class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D NRI_0568 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D NRI_0858 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] C 00910 Nitrogen metabolism [PATH:nri00910] D NRI_0487 NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:nri00061] D NRI_0427 acyl carrier protein K02078 acpP; acyl carrier protein D NRI_0919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D NRI_0603 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D NRI_0428 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D NRI_0642 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NRI_0640 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D NRI_0041 enoyl-[acyl-carrier-protein] reductase [NADH] 1 K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D NRI_0521 fabK; enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] C 00062 Fatty acid elongation C 00071 Fatty acid degradation C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:nri00561] D NRI_0604 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D NRI_0712 membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D NRI_0386 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:nri00564] D NRI_0220 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D NRI_0712 membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D NRI_0386 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NRI_0902 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D NRI_0238 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D NRI_0239 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D NRI_0283 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D NRI_0009 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D NRI_0900 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:nri00230] D NRI_0782 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D NRI_0187 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NRI_0888 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D NRI_0449 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D NRI_0424 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NRI_0778 phosphoribosylformylglycinamidine synthase K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D NRI_0029 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D NRI_0925 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D NRI_0227 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D NRI_0821 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D NRI_0059 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D NRI_0180 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NRI_0358 acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D NRI_0502 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D NRI_0534 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NRI_0854 GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NRI_0702 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D NRI_0390 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NRI_0495 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D NRI_0433 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1] D NRI_0217 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D NRI_0277 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:nri00240] D NRI_0213 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NRI_0475 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NRI_0483 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D NRI_0151 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D NRI_0174 pyrD; dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D NRI_0515 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D NRI_0760 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D NRI_0905 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D NRI_0534 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NRI_0848 conserved hypothetical protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D NRI_0843 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D NRI_0358 acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D NRI_0923 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D NRI_0390 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NRI_0495 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D NRI_0524 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D NRI_0915 dut; deoxyuridine 5triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NRI_0159 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:nri00250] D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NRI_0217 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D NRI_0059 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D NRI_0483 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D NRI_0487 NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0213 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NRI_0475 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NRI_0424 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NRI_0187 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:nri00260] D NRI_0251 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NRI_0210 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NRI_0858 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D NRI_0797 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0238 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] C 00270 Cysteine and methionine metabolism [PATH:nri00270] D NRI_0461 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D NRI_0251 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NRI_0299 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D NRI_0181 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NRI_0913 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00280 Valine, leucine and isoleucine degradation [PATH:nri00280] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0781 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D NRI_0763 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:nri00300] D NRI_0251 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NRI_0891 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D NRI_0819 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D NRI_0236 Mur ligase middle domain family K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D NRI_0453 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:nri00310] D NRI_0525 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00220 Arginine biosynthesis [PATH:nri00220] D NRI_0424 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0213 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NRI_0475 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NRI_0487 NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NRI_0819 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00360 Phenylalanine metabolism D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism D NRI_0525 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:nri00400] D NRI_0175 putative 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism D NRI_0487 NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism D NRI_0555 metallo-beta-lactamase family protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:nri00450] D NRI_0532 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D NRI_0746 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D NRI_0860 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D NRI_0210 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism D NRI_0424 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] C 00480 Glutathione metabolism [PATH:nri00480] D NRI_0299 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D NRI_0181 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D NRI_0450 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D NRI_0168 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:nri00550] D NRI_0565 putative UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D NRI_0236 Mur ligase middle domain family K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D NRI_0453 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D NRI_0903 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:nri00730] D NRI_0911 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D NRI_0294 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0295 Rrf2/aminotransferase, class V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0458 thiG; thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10] D NRI_0212 putative thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D NRI_0339 thiamine monophosphate synthase/teni subfamily K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D NRI_0244 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D NRI_0277 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:nri00740] D NRI_0719 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D NRI_0472 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D NRI_0622 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D NRI_0382 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D NRI_0822 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D NRI_0038 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:nri00750] D NRI_0355 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D NRI_0314 pdxJ; pyridoxal phosphate biosynthesis protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] C 00760 Nicotinate and nicotinamide metabolism [PATH:nri00760] D NRI_0929 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D NRI_0123 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D NRI_0358 acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D NRI_0302 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:nri00770] D NRI_0930 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D NRI_0301 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D NRI_0921 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:nri00780] D NRI_0587 bioC; biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D NRI_0428 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D NRI_0642 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NRI_0640 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D NRI_0041 enoyl-[acyl-carrier-protein] reductase [NADH] 1 K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D NRI_0586 conserved hypothetical protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D NRI_0585 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D NRI_0589 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D NRI_0588 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D NRI_0583 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D NRI_0670 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:nri00785] D NRI_0095 lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D NRI_0316 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0768 pdhA; pyruvate dehydrogenase E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D NRI_0720 pdhB; pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D NRI_0910 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D NRI_0553 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D NRI_0525 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] C 00790 Folate biosynthesis [PATH:nri00790] D NRI_0561 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D NRI_0474 putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D NRI_0460 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D NRI_0459 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D NRI_0693 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D NRI_0719 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] C 00670 One carbon pool by folate [PATH:nri00670] D NRI_0790 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D NRI_0210 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NRI_0449 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D NRI_0180 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NRI_0090 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D NRI_0159 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D NRI_0135 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:nri00860] D NRI_0797 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D NRI_0493 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0492 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0711 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0375 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D NRI_0366 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D NRI_0415 conserved hypothetical protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D NRI_0928 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D NRI_0429 hemF; coproporphyrinogen III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D NRI_0340 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D NRI_0756 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D NRI_0594 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D NRI_0824 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D NRI_0337 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:nri00130] D NRI_0772 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D NRI_0599 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D NRI_0365 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D NRI_0909 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D NRI_0331 Coq7 family protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:nri00900] D NRI_0419 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D NRI_0173 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D NRI_0697 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D NRI_0136 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D NRI_0766 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D NRI_0412 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D NRI_0671 ispA; putative geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D NRI_0231 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D NRI_0903 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D NRI_0682 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:nri00261] D NRI_0251 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NRI_0891 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis D NRI_0767 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D NRI_0919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D NRI_0642 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NRI_0041 enoyl-[acyl-carrier-protein] reductase [NADH] 1 K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D NRI_0427 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D NRI_0461 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:nri03020] D NRI_0655 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D NRI_0653 bifunctional DNA-directed RNA polymerase, beta and beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0654 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0280 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:nri03010] D NRI_0387 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D NRI_0907 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D NRI_0263 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D NRI_0559 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D NRI_0274 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D NRI_0062 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D NRI_0665 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D NRI_0271 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D NRI_0807 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D NRI_0256 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D NRI_0279 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D NRI_0666 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D NRI_0278 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D NRI_0270 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D NRI_0058 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D NRI_0124 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D NRI_0266 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D NRI_0061 conserved domain protein K02963 RP-S18; small subunit ribosomal protein S18 D NRI_0261 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D NRI_0758 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D NRI_0798 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D NRI_0658 L1P family of ribosomal proteins K02863 RP-L1; large subunit ribosomal protein L1 D NRI_0260 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D NRI_0257 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D NRI_0258 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D NRI_0269 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D NRI_0272 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D NRI_0656 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D NRI_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D NRI_0657 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D NRI_0659 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D NRI_0808 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D NRI_0267 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D NRI_0275 ribosomal protein L15 amino region K02876 RP-L15; large subunit ribosomal protein L15 D NRI_0264 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D NRI_0281 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D NRI_0273 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D NRI_0862 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D NRI_0207 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D NRI_0865 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D NRI_0262 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D NRI_0259 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D NRI_0268 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D NRI_0297 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D NRI_0864 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D NRI_0315 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D NRI_0265 conserved domain protein K02904 RP-L29; large subunit ribosomal protein L29 D NRI_0476 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D NRI_0605 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D NRI_0248 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D NRI_0206 conserved domain protein K02916 RP-L35; large subunit ribosomal protein L35 D NRI_16SA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D NRI_23SB 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D NRI_5SC 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:nri00970] D NRI_0844 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D NRI_0319 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0775 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0874 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0601 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0540 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D NRI_0816 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D NRI_0148 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D NRI_0164 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D NRI_0371 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D NRI_0255 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D NRI_0795 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D NRI_0451 tRNA-His K14226 tRNA-His; tRNA His D NRI_0215 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D NRI_0091 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D NRI_0723 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0409 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0156 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0558 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0286 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D NRI_0243 tRNA-Met K14230 tRNA-Met; tRNA Met D NRI_0392 tRNA-Met K14230 tRNA-Met; tRNA Met D NRI_0167 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D NRI_0528 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D NRI_0791 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0803 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0509 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0673 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D NRI_0138 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D NRI_0662 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D NRI_0254 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D NRI_0590 tRNA-Val K14237 tRNA-Val; tRNA Val D NRI_0374 tRNA-Val K14237 tRNA-Val; tRNA Val D NRI_0493 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0492 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0711 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0247 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D NRI_0082 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D NRI_0152 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NRI_0452 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D NRI_0729 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D NRI_0727 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D NRI_0285 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NRI_0544 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NRI_0326 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NRI_0860 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NRI_0090 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D NRI_0575 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NRI_0479 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NRI_0514 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NRI_0743 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NRI_0047 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NRI_0352 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NRI_0747 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NRI_0208 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NRI_0403 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NRI_0336 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NRI_0205 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:nri03060] D NRI_0276 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D NRI_0661 conserved domain protein K03073 secE; preprotein translocase subunit SecE D NRI_0842 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D NRI_0598 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D NRI_0397 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D NRI_0313 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D NRI_0383 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D NRI_0224 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D NRI_0347 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D NRI_0517 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NRI_0522 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D NRI_0456 Twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D NRI_0128 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D NRI_0750 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D NRI_0879 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:nri04122] D NRI_0294 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0295 Rrf2/aminotransferase, class V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0443 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D NRI_0745 molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D NRI_0042 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:nri03018] D NRI_0122 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NRI_0056 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D NRI_0067 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D NRI_0800 metallo-beta-lactamase family, beta-casp subfamily K12574 rnj; ribonuclease J [EC:3.1.-.-] D NRI_0017 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NRI_0614 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D NRI_0619 pcnB; poly A polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:nri03030] D NRI_0445 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D NRI_0163 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D NRI_0465 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D NRI_0361 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D NRI_0166 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D NRI_0529 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D NRI_0920 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0644 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D NRI_0680 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:nri03410] D NRI_0237 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D NRI_0895 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D NRI_0394 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D NRI_0690 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:nri03420] D NRI_0343 DNA helicase II, UvrD/Rep family, N-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0344 DNA helicase II, UvrD/Rep family, C-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:nri03430] D NRI_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D NRI_0581 DNA mismatch repair protein, MutL/HexB family K03572 mutL; DNA mismatch repair protein MutL D NRI_0343 DNA helicase II, UvrD/Rep family, N-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0344 DNA helicase II, UvrD/Rep family, C-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0690 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0163 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D NRI_0166 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D NRI_0465 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D NRI_0361 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D NRI_0445 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:nri03440] D NRI_0690 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0193 putative DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D NRI_0434 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D NRI_0866 recR; recombination protein RecR K06187 recR; recombination protein RecR D NRI_0507 recA; protein RecA K03553 recA; recombination protein RecA D NRI_0550 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D NRI_0552 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D NRI_0912 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D NRI_0667 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D NRI_0163 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D NRI_0166 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D NRI_0465 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D NRI_0361 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D NRI_0445 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D NRI_0199 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:nri02010] D NRI_0005 iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D NRI_0296 putative transporter K02011 afuB; iron(III) transport system permease protein D NRI_0455 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D NRI_0897 conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D NRI_0504 mce-related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D NRI_0676 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D NRI_0677 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D NRI_0063 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D NRI_0197 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D NRI_0454 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D NRI_0774 phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D NRI_0139 lolC; lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D NRI_0308 glnQ; ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D NRI_0482 heme exporter protein, CcmC family K02195 ccmC; heme exporter protein C D NRI_0157 CcmB-related protein K02194 ccmB; heme exporter protein B D NRI_0678 ABC transporter, ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D NRI_0040 aprD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:nri03070] D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein D NRI_0598 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D NRI_0397 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D NRI_0661 conserved domain protein K03073 secE; preprotein translocase subunit SecE D NRI_0842 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D NRI_0276 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D NRI_0313 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D NRI_0383 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D NRI_0224 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D NRI_0522 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D NRI_0347 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D NRI_0517 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NRI_0456 Twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D NRI_0128 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D NRI_0832 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3 D NRI_0202 type IV secretion system protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D NRI_0717 virB9; type IV secretion system protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D NRI_0828 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0830 type IV secretion system protein VirB6 K03201 virB6; type IV secretion system protein VirB6 D NRI_0827 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0829 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0203 type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8 D NRI_0718 type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8 D NRI_0715 type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D NRI_0831 type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D NRI_0737 type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D NRI_0714 virB; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D NRI_0713 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:nri02020] D NRI_0063 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D NRI_0162 periplasmic serine protease, DO/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D NRI_0824 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D NRI_0250 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0003 pleC; Sensor histidine kinase PleC K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D NRI_0485 pleD; Response regulator/GGDEF domain protein PleD K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D NRI_0351 cckA; Sensor histidine kinase/response regulator CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D NRI_0226 ctrA; DNA-binding response regulator CtrA K13584 ctrA; two-component system, cell cycle response regulator CtrA D NRI_0595 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D NRI_0596 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D NRI_0597 petC; ubiquinol-Cytochrome c reductase, cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D NRI_0448 cycM; cytochrome c family protein K08738 CYC; cytochrome c D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D NRI_0595 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:nri02024] D NRI_0719 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D NRI_0472 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D NRI_0383 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D NRI_0661 conserved domain protein K03073 secE; preprotein translocase subunit SecE D NRI_0842 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D NRI_0276 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D NRI_0313 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D NRI_0224 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D NRI_0522 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D NRI_0347 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D NRI_0517 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D NRI_0305 rpoD; RNA polymerase sigma-70 factor (RpoD) K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:nri01501] D NRI_0780 putative permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein C 01502 Vancomycin resistance [PATH:nri01502] D NRI_0453 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:nri01503] D NRI_0162 periplasmic serine protease, DO/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:nri01000] C 01001 Protein kinases [BR:nri01001] D NRI_0003 pleC; Sensor histidine kinase PleC K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D NRI_0351 cckA; Sensor histidine kinase/response regulator CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:nri01009] D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:nri01002] D NRI_0879 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D NRI_0854 GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NRI_0187 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NRI_0878 peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-] D NRI_0877 peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-] D NRI_0450 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D NRI_0330 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D NRI_0446 metallopeptidase, M24 family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D NRI_0880 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D NRI_0402 metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D NRI_0696 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D NRI_0162 periplasmic serine protease, DO/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D NRI_0725 clpP; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D NRI_0338 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D NRI_0750 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D NRI_0388 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D NRI_0530 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease D NRI_0171 hslV; ATP-dependent protease HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D NRI_0526 PmbA protein K03592 pmbA; PmbA protein D NRI_0216 tldD; TldD protein K03568 tldD; TldD protein D NRI_0161 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D NRI_0160 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:nri01011] D NRI_0565 putative UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D NRI_0236 Mur ligase middle domain family K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D NRI_0535 membrane protein, MviN family K03980 murJ; putative peptidoglycan lipid II flippase C 01004 Lipid biosynthesis proteins [BR:nri01004] D NRI_0919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D NRI_0603 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D NRI_0428 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D NRI_0642 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NRI_0640 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D NRI_0041 enoyl-[acyl-carrier-protein] reductase [NADH] 1 K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D NRI_0521 fabK; enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D NRI_0604 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D NRI_0712 membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D NRI_0386 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:nri01006] D NRI_0671 ispA; putative geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D NRI_0231 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D NRI_0903 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D NRI_0545 tRNA delta K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D NRI_0772 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D NRI_0594 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:nri01007] D NRI_0743 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NRI_0493 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0492 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0711 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0336 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NRI_0205 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D NRI_0326 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NRI_0047 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NRI_0860 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NRI_0514 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NRI_0575 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NRI_0479 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NRI_0452 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D NRI_0747 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NRI_0729 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D NRI_0727 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D NRI_0544 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NRI_0352 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NRI_0285 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NRI_0152 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NRI_0208 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NRI_0403 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NRI_0730 aspartate aminotransferase A K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NRI_0797 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D NRI_0585 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D NRI_0819 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D NRI_0589 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:nri00194] D NRI_0734 ATP synthase, Delta/Epsilon chain, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D NRI_0735 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D NRI_0563 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D NRI_0132 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D NRI_0133 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D NRI_0379 ATP synthase F0, B' chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b D NRI_0378 conserved domain protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D NRI_0377 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:nri03000] D NRI_0670 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NRI_0748 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D NRI_0001 parB; chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NRI_0158 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D NRI_0342 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:nri03021] D NRI_0280 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D NRI_0655 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D NRI_0653 bifunctional DNA-directed RNA polymerase, beta and beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0654 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0305 rpoD; RNA polymerase sigma-70 factor (RpoD) K03086 rpoD; RNA polymerase primary sigma factor D NRI_0333 rpoH; RNA polymerase sigma-32 factor (RpoH) K03089 rpoH; RNA polymerase sigma-32 factor D NRI_0496 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D NRI_0847 putative N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D NRI_0660 putative transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D NRI_0158 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D NRI_0646 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D NRI_0067 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:nri03019] D NRI_0122 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D NRI_0883 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D NRI_0800 metallo-beta-lactamase family, beta-casp subfamily K12574 rnj; ribonuclease J [EC:3.1.-.-] D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NRI_0056 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D NRI_0067 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D NRI_0017 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NRI_0614 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D NRI_0619 pcnB; poly A polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] C 03041 Spliceosome C 03011 Ribosome [BR:nri03011] D NRI_0387 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D NRI_0907 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D NRI_0263 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D NRI_0559 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D NRI_0274 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D NRI_0062 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D NRI_0665 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D NRI_0271 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D NRI_0807 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D NRI_0256 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D NRI_0279 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D NRI_0666 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D NRI_0278 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D NRI_0270 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D NRI_0058 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D NRI_0124 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D NRI_0266 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D NRI_0061 conserved domain protein K02963 RP-S18; small subunit ribosomal protein S18 D NRI_0261 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D NRI_0758 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D NRI_0798 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D NRI_0658 L1P family of ribosomal proteins K02863 RP-L1; large subunit ribosomal protein L1 D NRI_0260 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D NRI_0257 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D NRI_0258 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D NRI_0269 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D NRI_0272 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D NRI_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D NRI_0657 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D NRI_0659 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D NRI_0656 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D NRI_0808 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D NRI_0267 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D NRI_0275 ribosomal protein L15 amino region K02876 RP-L15; large subunit ribosomal protein L15 D NRI_0264 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D NRI_0281 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D NRI_0273 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D NRI_0862 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D NRI_0207 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D NRI_0865 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D NRI_0262 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D NRI_0259 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D NRI_0268 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D NRI_0864 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D NRI_0315 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D NRI_0265 conserved domain protein K02904 RP-L29; large subunit ribosomal protein L29 D NRI_0476 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D NRI_0605 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D NRI_0248 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D NRI_0206 conserved domain protein K02916 RP-L35; large subunit ribosomal protein L35 D NRI_0297 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D NRI_5SC 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D NRI_16SA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D NRI_23SB 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:nri03009] D NRI_0883 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D NRI_0918 era; GTP-binding protein Era K03595 era; GTPase D NRI_0420 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D NRI_0158 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D NRI_0496 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D NRI_0847 putative N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D NRI_0660 putative transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D NRI_0349 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D NRI_0194 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D NRI_0035 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D NRI_0885 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D NRI_0253 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D NRI_0523 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D NRI_0531 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D NRI_0146 ribosomal large subunit pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D NRI_0125 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D NRI_0122 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D NRI_0006 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D NRI_0513 putative GTP-binding protein EngA K03977 engA; GTPase D NRI_0554 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D NRI_0884 iojap-related protein K09710 ybeB; ribosome-associated protein D NRI_0240 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor D NRI_0873 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:nri03016] D NRI_0493 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0492 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0711 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0352 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NRI_0514 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NRI_0479 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NRI_0860 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NRI_0047 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NRI_0452 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D NRI_0152 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NRI_0285 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NRI_0544 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NRI_0326 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NRI_0575 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NRI_0747 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NRI_0208 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NRI_0403 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NRI_0336 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NRI_0205 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D NRI_0393 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D NRI_0886 putative tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D NRI_0018 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D NRI_0098 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D NRI_0294 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0295 Rrf2/aminotransferase, class V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0554 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D NRI_0545 tRNA delta K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D NRI_0694 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D NRI_0683 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D NRI_0825 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D NRI_rnpB1 rnpB1 K01978 rnpB; M1 RNA D NRI_0506 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D NRI_0743 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NRI_0729 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D NRI_0727 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D NRI_0083 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D NRI_0357 nifR; NifR3 family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D NRI_0802 miaB; tRNA-I(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D NRI_0751 conserved hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D NRI_0863 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D NRI_0443 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D NRI_0292 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D NRI_0311 aminomethyl transferase family protein K06980 ygfZ; tRNA-modifying protein YgfZ D NRI_0015 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D NRI_0812 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D NRI_0228 sialoglycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D NRI_0679 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D NRI_0056 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:nri03012] D NRI_0497 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D NRI_0284 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D NRI_0906 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D NRI_0663 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D NRI_0664 fusA; translation elongation factor G K02355 fusA; elongation factor G D NRI_0385 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D NRI_0904 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D NRI_0129 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D NRI_0298 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D NRI_0849 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D NRI_0189 efp; translation elongation factor P K02356 efp; elongation factor P D NRI_0576 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:nri03110] D NRI_0306 ATP-dependent Clp protease, ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D NRI_0120 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D NRI_0726 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D NRI_0172 hslU; heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG D NRI_0017 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NRI_0289 chaperone protein K04044 hscA; molecular chaperone HscA D NRI_0614 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D NRI_0512 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D NRI_0290 putative chaperone protein HscB K04082 hscB; molecular chaperone HscB D NRI_0291 putative chaperone protein HscB K04082 hscB; molecular chaperone HscB D NRI_0204 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D NRI_0615 groS; chaperonin GroS K04078 groES; chaperonin GroES D NRI_0162 periplasmic serine protease, DO/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D NRI_0402 metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D NRI_0377 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D NRI_0347 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D NRI_0820 peptidyl-prolyl cis-trans isomerase, cyclophilin-type K09565 PPIF; peptidyl-prolyl isomerase F (cyclophilin D) [EC:5.2.1.8] D NRI_0617 Rotamase family protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D NRI_0861 trx; thioredoxin K03671 TXN; thioredoxin D NRI_0303 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D NRI_0196 putative glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin C 04131 Membrane trafficking [BR:nri04131] D NRI_0534 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NRI_0410 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:nri04121] C 03051 Proteasome [BR:nri03051] D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:nri03032] D NRI_0644 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D NRI_0612 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D NRI_0250 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D NRI_0529 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D NRI_0920 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0163 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D NRI_0166 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D NRI_0361 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D NRI_0445 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D NRI_0465 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D NRI_0680 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D NRI_0917 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D NRI_0698 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D NRI_0570 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:nri03036] D NRI_0883 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D NRI_0612 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D NRI_0250 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D NRI_0404 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D NRI_0626 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D NRI_0560 putative cell division protein K03589 ftsQ; cell division protein FtsQ D NRI_0334 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D NRI_0722 conserved hypothetical protein K09888 zapA; cell division protein ZapA D NRI_0001 parB; chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NRI_0683 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D NRI_0423 site-specific recombinase, phage integrase family K03733 xerC; integrase/recombinase XerC D NRI_0144 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D NRI_0855 mrp; Mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:nri03400] D NRI_0805 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NRI_0237 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D NRI_0915 dut; deoxyuridine 5triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NRI_0895 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D NRI_0394 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D NRI_0690 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NRI_0473 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D NRI_0343 DNA helicase II, UvrD/Rep family, N-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0344 DNA helicase II, UvrD/Rep family, C-terminal fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NRI_0655 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D NRI_0653 bifunctional DNA-directed RNA polymerase, beta and beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0654 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D NRI_0280 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D NRI_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D NRI_0581 DNA mismatch repair protein, MutL/HexB family K03572 mutL; DNA mismatch repair protein MutL D NRI_0163 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D NRI_0166 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D NRI_0361 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D NRI_0445 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D NRI_0465 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0507 recA; protein RecA K03553 recA; recombination protein RecA D NRI_0550 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D NRI_0552 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D NRI_0912 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D NRI_0199 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D NRI_0193 putative DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D NRI_0667 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D NRI_0434 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D NRI_0866 recR; recombination protein RecR K06187 recR; recombination protein RecR D NRI_0442 ATP-dependent DNA helicase, UvrD/REP family K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D NRI_0499 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D NRI_0917 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D NRI_0698 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D NRI_0570 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D NRI_0612 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D NRI_0390 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NRI_0495 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:nri03029] D NRI_0596 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D NRI_0497 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D NRI_0284 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D NRI_0906 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D NRI_0663 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D NRI_0664 fusA; translation elongation factor G K02355 fusA; elongation factor G D NRI_0918 era; GTP-binding protein Era K03595 era; GTPase D NRI_0336 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NRI_0479 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NRI_0452 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D NRI_0047 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NRI_0247 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D NRI_0082 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D NRI_0731 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D NRI_0695 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D NRI_0017 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NRI_0204 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D NRI_0614 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D NRI_0615 groS; chaperonin GroS K04078 groES; chaperonin GroES D NRI_0512 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D NRI_0294 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0295 Rrf2/aminotransferase, class V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0293 iscU; FeS cluster assembly scaffold IscU K22068 ISCU; iron-sulfur cluster assembly enzyme ISCU, mitochondrial D NRI_0288 iron-sulfur cluster binding protein K22071 FDX2; ferredoxin-2, mitochondrial D NRI_0290 putative chaperone protein HscB K04082 hscB; molecular chaperone HscB D NRI_0291 putative chaperone protein HscB K04082 hscB; molecular chaperone HscB D NRI_0196 putative glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D NRI_0432 putative iron-sulfur cluster assembly accessory protein K22072 ISCA2; iron-sulfur cluster assembly 2 D NRI_0784 hira-interacting protein 5 K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial D NRI_0645 methyltransferase domain family K18162 NDUFAF5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 [EC:2.1.1.-] D NRI_0574 ATP synthase beta subunit/transription termination factor rho K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D NRI_0855 mrp; Mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D NRI_0594 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D NRI_0249 cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D NRI_0824 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D NRI_0383 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D NRI_0066 lipoprotein, putative K14998 SURF1; surfeit locus 1 family protein D NRI_0527 major surface protein K07152 SCO1; protein SCO1 D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:nri02000] D NRI_0389 putative ABC transporter, ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NRI_0833 efflux ABC transporter, heavy metal transporter (HMT) family, permease/ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NRI_0040 aprD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D NRI_0005 iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D NRI_0296 putative transporter K02011 afuB; iron(III) transport system permease protein D NRI_0455 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D NRI_0504 mce-related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D NRI_0676 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D NRI_0677 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D NRI_0897 conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D NRI_0063 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D NRI_0197 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D NRI_0454 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D NRI_0774 phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D NRI_0139 lolC; lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D NRI_0308 glnQ; ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D NRI_0482 heme exporter protein, CcmC family K02195 ccmC; heme exporter protein C D NRI_0157 CcmB-related protein K02194 ccmB; heme exporter protein B D NRI_0678 ABC transporter, ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D NRI_0749 major facilitator family transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D NRI_0780 putative permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D NRI_0064 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D NRI_0815 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein D NRI_0440 magnesium transporter K06213 mgtE; magnesium transporter D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein D NRI_0695 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D NRI_0887 putative competence protein ComL K05807 bamD; outer membrane protein assembly factor BamD D NRI_0186 transporter, AcrB/AcrD/AcrF family K18989 vexF; multidrug efflux pump D NRI_0700 putative sodium:proline symporter K11928 putP; sodium/proline symporter D NRI_0853 glutathione-regulated potassium-efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D NRI_0032 multisubunit Na+/H+ antiporter, MnhB subunit K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D NRI_0033 multisubunit Na+/H+ antiporter, MnhB subunit K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D NRI_0030 monovalent cation/proton antiporter, MnhC/PhaC subunit family K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D NRI_0684 NADH-ubiquinone/plastoquinone oxidoreductase family protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D NRI_0536 NADH-ubiquinone/plastoquinone oxidoreductase family protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D NRI_0494 conserved hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D NRI_0178 multiple resistance and pH regulation protein F (MrpF / PhaF) K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D NRI_0034 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D NRI_0535 membrane protein, MviN family K03980 murJ; putative peptidoglycan lipid II flippase D NRI_0169 auxin Efflux Carrier K24180 mleP; malate permease and related proteins D NRI_0027 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D NRI_0856 ompA; putative peptidoglycan-associated lipoprotein (PAL/OmpA) K03640 pal; peptidoglycan-associated lipoprotein D NRI_0149 efflux transporter, RND family, MFP subunit K18990 vexE; membrane fusion protein, multidrug efflux system D NRI_0549 cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:nri02044] D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein D NRI_0040 aprD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D NRI_0310 ComEC/Rec2 family protein K02238 comEC; competence protein ComEC D NRI_0832 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3 D NRI_0831 type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D NRI_0737 type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D NRI_0828 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0830 type IV secretion system protein VirB6 K03201 virB6; type IV secretion system protein VirB6 D NRI_0827 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0829 type IV secretion system protein, VirB6 family K03201 virB6; type IV secretion system protein VirB6 D NRI_0203 type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8 D NRI_0718 type IV secretion system protein VirB8 K03203 virB8; type IV secretion system protein VirB8 D NRI_0202 type IV secretion system protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D NRI_0717 virB9; type IV secretion system protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D NRI_0715 type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D NRI_0714 virB; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D NRI_0713 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D NRI_0224 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D NRI_0347 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D NRI_0598 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D NRI_0661 conserved domain protein K03073 secE; preprotein translocase subunit SecE D NRI_0397 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D NRI_0842 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D NRI_0276 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D NRI_0517 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NRI_0522 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D NRI_0313 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D NRI_0383 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D NRI_0456 Twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D NRI_0128 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins C 02022 Two-component system [BR:nri02022] D NRI_0003 pleC; Sensor histidine kinase PleC K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D NRI_0485 pleD; Response regulator/GGDEF domain protein PleD K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D NRI_0351 cckA; Sensor histidine kinase/response regulator CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D NRI_0226 ctrA; DNA-binding response regulator CtrA K13584 ctrA; two-component system, cell cycle response regulator CtrA C 02035 Bacterial motility proteins C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:nri04812] D NRI_0334 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D NRI_0404 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D NRI_0001 parB; chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:nri04147] D NRI_0467 htpG; chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG D NRI_0707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NRI_0410 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NRI_0411 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NRI_0533 antioxidant, AhpC/Tsa family K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D NRI_0614 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D NRI_0017 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NRI_0502 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D NRI_0663 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D NRI_0393 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D NRI_0277 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D NRI_0341 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0674 glnA; glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NRI_0375 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D NRI_0180 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NRI_0438 lpdA-1; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0648 lpdA-2; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NRI_0245 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:nri02048] D NRI_0334 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D NRI_0493 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0492 glutamyl-tRNA synthetase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0711 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NRI_0901 TPR repeat region superfamily K09159 cptB; antitoxin CptB D NRI_0294 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NRI_0295 Rrf2/aminotransferase, class V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:nri01504] D NRI_0765 outer membrane efflux protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:nri03100] D NRI_0844 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D NRI_0319 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0775 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0874 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0601 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D NRI_0540 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D NRI_0816 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D NRI_0148 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D NRI_0164 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D NRI_0371 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D NRI_0255 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D NRI_0795 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D NRI_0451 tRNA-His K14226 tRNA-His; tRNA His D NRI_0215 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D NRI_0091 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D NRI_0723 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0409 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0156 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0558 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D NRI_0286 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D NRI_0243 tRNA-Met K14230 tRNA-Met; tRNA Met D NRI_0392 tRNA-Met K14230 tRNA-Met; tRNA Met D NRI_0167 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D NRI_0528 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D NRI_0791 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0803 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0509 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D NRI_0673 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D NRI_0138 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D NRI_0662 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D NRI_0254 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D NRI_0590 tRNA-Val K14237 tRNA-Val; tRNA Val D NRI_0374 tRNA-Val K14237 tRNA-Val; tRNA Val D NRI_16SA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D NRI_23SB 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D NRI_5SC 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D NRI_rnpB1 rnpB1 K01978 rnpB; M1 RNA D NRI_tmRNA1 NRI_tmRNA1 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D NRI_0466 tena/thi-4 family K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D NRI_0362 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D NRI_0699 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D NRI_0470 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D NRI_0823 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D NRI_0318 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D NRI_0345 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D NRI_0373 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D NRI_0043 hexapeptide transferase family protein K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D NRI_0323 ferredoxin K05524 fdxA; ferredoxin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D NRI_0608 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D NRI_0732 RpsU-divergently transcribed protein K18587 COQ9; ubiquinone biosynthesis protein COQ9 D NRI_0317 aromatic rich family protein K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D NRI_0405 conserved hypothetical protein K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription C 99974 Translation C 99975 Protein processing D NRI_0724 putative trigger factor K03545 tig; trigger factor D NRI_0777 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D NRI_0068 putative Mg chelatase-like protein K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D NRI_0222 DNA repair protein RadC K03630 radC; DNA repair protein RadC D NRI_0126 RmuC domain protein K09760 rmuC; DNA recombination protein RmuC D NRI_0439 conserved hypothetical protein K07460 yraN; putative endonuclease D NRI_0369 DNA processing chain A K04096 smf; DNA processing protein D NRI_0709 conserved hypothetical protein K07501 K07501; 3'-5' exonuclease C 99979 Viral proteins C 99998 Others D NRI_0463 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D NRI_0150 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D NRI_0813 branched-chain amino acid transporter K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth C 99993 Cell motility C 99995 Signaling proteins D NRI_0650 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein C 99992 Structural proteins D NRI_0896 putative VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D NRI_0899 aprE; secretion protein, HlyD family K02022 ABC.MR.TX; HlyD family secretion protein D NRI_0799 cytoChrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D NRI_0809 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D NRI_0834 phospholipase, patatin family K07001 K07001; NTE family protein D NRI_0376 YihY family protein K07058 K07058; membrane protein D NRI_0246 rhodanese domain protein K07146 K07146; UPF0176 protein C 99997 Function unknown D NRI_0048 membrane protein K06890 K06890; uncharacterized protein D NRI_0859 conserved hypothetical protein K07018 K07018; uncharacterized protein D NRI_0229 trap transporter solute receptor, taxi family K07080 K07080; uncharacterized protein D NRI_0233 domain of unknown function, putative K07090 K07090; uncharacterized protein D NRI_0826 conserved hypothetical protein K08998 K08998; uncharacterized protein D NRI_0436 conserved hypothetical protein K09985 K09985; uncharacterized protein D NRI_0478 conserved hypothetical protein K09987 K09987; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2024