+E Ribosome biogenesis KO
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Ribosome Biogenesis - Candidatus Nitrohelix vancouverensis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D G3M78_10875 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D G3M78_05405 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C G3M78_13420 GTPase Era K03595 era; GTPase
C G3M78_00015 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C G3M78_12465 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C G3M78_01565 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C G3M78_03420 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C G3M78_13660 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C G3M78_08720 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C G3M78_02205 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D G3M78_06205 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D G3M78_13195 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D G3M78_11550 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D G3M78_03795 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D G3M78_14570 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D G3M78_03775 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D G3M78_00675 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D G3M78_05720 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D G3M78_04805 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D G3M78_08150 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D G3M78_14345 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D G3M78_10755 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D G3M78_00675 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D G3M78_14305 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D G3M78_06105 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D G3M78_03360 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D G3M78_04250 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D G3M78_08185 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D G3M78_03350 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C G3M78_01890 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C G3M78_00125 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C G3M78_02390 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
B rRNA processing factors
C G3M78_10875 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C G3M78_11710 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C G3M78_04260 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-]
B rRNA helicases
B GTPases
C G3M78_13420 GTPase Era K03595 era; GTPase
C G3M78_08735 ribosome biogenesis GTPase Der K03977 engA; GTPase
C G3M78_00015 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C G3M78_01215 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C G3M78_08645 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C G3M78_13950 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C G3M78_13675 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
C G3M78_13655 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C G3M78_03415 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
C G3M78_08805 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C G3M78_09770 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
C G3M78_04275 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C G3M78_10835 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024