+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Candidatus Nitrohelix vancouverensis

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D G3M78_10875 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D G3M78_05405 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C G3M78_13420 GTPase Era K03595 era; GTPase C G3M78_00015 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C G3M78_12465 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor C G3M78_01565 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C G3M78_03420 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor C G3M78_13660 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C G3M78_08720 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C G3M78_02205 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D G3M78_06205 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D G3M78_13195 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D G3M78_11550 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D G3M78_03795 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D G3M78_14570 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D G3M78_03775 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D G3M78_00675 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D G3M78_05720 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D G3M78_04805 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D G3M78_08150 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D G3M78_14345 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D G3M78_10755 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D G3M78_00675 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D G3M78_14305 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D G3M78_06105 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D G3M78_03360 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D G3M78_04250 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D G3M78_08185 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D G3M78_03350 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C G3M78_01890 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C G3M78_00125 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C G3M78_02390 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] B rRNA processing factors C G3M78_10875 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C G3M78_11710 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C G3M78_04260 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] B rRNA helicases B GTPases C G3M78_13420 GTPase Era K03595 era; GTPase C G3M78_08735 ribosome biogenesis GTPase Der K03977 engA; GTPase C G3M78_00015 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C G3M78_01215 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C G3M78_08645 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C G3M78_13950 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C G3M78_13675 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A C G3M78_13655 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C G3M78_03415 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein C G3M78_08805 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C G3M78_09770 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor C G3M78_04275 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C G3M78_10835 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024