+E Ribosome biogenesis KO
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Ribosome Biogenesis - Nitrobacter winogradskyi
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Nwi_1918 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Nwi_1917 GTP-binding protein Era K03595 era; GTPase
C Nwi_0442 GTP-binding protein, HSR1-related protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Nwi_1113 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C Nwi_0022 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Nwi_1722 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C Nwi_1345 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
C Nwi_1549 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Nwi_1682 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Nwi_0156 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Nwi_2144 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Nwi_2549 Conserved hypothetical protein 95 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Nwi_2564 Conserved hypothetical protein 46 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Nwi_0096 Glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Nwi_1043 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Nwi_0115 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Nwi_0632 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D Nwi_2062 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Nwi_2150 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Nwi_0447 Protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Nwi_2528 Protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Nwi_2806 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Nwi_0632 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Nwi_0631 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Nwi_0315 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Nwi_2550 pseudouridine synthase, Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Nwi_1394 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Nwi_2431 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C Nwi_0012 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Nwi_0231 [SSU ribosomal protein S5P]-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C Nwi_2781 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Nwi_2367 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C Nwi_2522 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C Nwi_1918 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Nwi_1720 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
C Nwi_2004 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C Nwi_1917 GTP-binding protein Era K03595 era; GTPase
C Nwi_2020 Small GTP-binding protein K03977 engA; GTPase
C Nwi_0442 GTP-binding protein, HSR1-related protein K03979 obgE; GTPase [EC:3.6.5.-]
C Nwi_1450 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C Nwi_2696 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Nwi_1922 RelA/SpoT protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Nwi_0025 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Nwi_0021 Protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Nwi_0446 Iojap-related protein K09710 ybeB; ribosome-associated protein
C Nwi_0016 Protein of unknown function K07042 ybeY; probable rRNA maturation factor
C Nwi_0178 SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
C Nwi_2510 Conserved hypothetical protein 92 K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024