+E Transcription factors KO
#
Transcription Factors - Oceanobacillus iheyensis
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D OB0173 site-specific DNA-methyltransferase (cytosine-specific) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D OB3333 cytosine-specific DNA-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D OB3336 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D OB0722 transcriptional regulator (AraC/XylS family) K13653 K13653; AraC family transcriptional regulator
D OB1237 transcriptional regulator (AraC/XylS family) (partial) K13653 K13653; AraC family transcriptional regulator
D OB0911 transcriptional regulator (AraC/XylS family) (divided with OB0911 and OB0912) K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D OB2873 transcriptional regulator (LysR family) K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D OB3407 transcriptional regulator (LysR family) K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D OB0840 fruR; transcriptional repressor of fructose operon K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D OB2959 transcriptional regulator of sigma-E- and sigma-K-dependent K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D OB2808 transcriptional repressor of phosphotransferase system K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D OB1947 hypothetical conserved protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D OB2361 hypothetical conserved protein K09012 sufR; DeoR family transcriptional regulator, suf operon transcriptional repressor
C LacI family
D OB3241 transcriptional regulator (LacI-family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OB2577 rbsR; transcriptional repressor of ribose operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OB2226 ccpA; transcriptional regulator involved in carbon catabolite control K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OB2705 transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D OB3476 transcriptional repressor (LacI family) K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D OB2800 transcriptional repressor of the arabinose operon K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D OB2272 transcriptional regulator (GntR family) K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D OB0612 transcriptional regulator (GntR family) K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D OB1615 transcriptional regulator (GntR family) K03710 K03710; GntR family transcriptional regulator
D OB0967 transcriptional regulator (GntR family) K03710 K03710; GntR family transcriptional regulator
D OB0369 transcriptional regulator (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OB2175 transcriptional regulator (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OB2606 transcriptional regulator (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OB2842 transcriptional regulator (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OB2688 transcriptional regulator (GntR family) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OB3190 gntR; transcriptional repressor of gluconate operon K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D OB3380 transcriptional regulator (TetR-family) K09017 rutR; TetR/AcrR family transcriptional regulator
D OB2121 transcriptional regulator (TetR/AcrR family) K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
C Lrp/AsnC family
C LuxR family
D OB2110 transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D OB1198 transcriptional regulator (MarR family) K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D OB0603 transcriptional regulator (MarR family) K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D OB3458 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D OB1650 glnR; glutamine synthetase transcription repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D OB0950 transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
C Fur family
D OB1849 ferric uptake regulation protein (Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D OB2398 zinc-specific metalloregulatory protein (Fur family) K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D OB0905 transcriptional regulator (Fur family) K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D OB2820 transcriptional regulator (IclR family) K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
C Rrf2 family
D OB0292 hypothetical conserved protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D OB2016 hypothetical conserved protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D OB0325 transcriptional regulator (ArsR family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D OB2425 transcriptional regulator (ArsR family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D OB0277 cadmium efflux system accessory protein (cadC protein) K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D OB1400 transcriptional regulator (ArsR family) K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D OB0962 transcriptional regulator (ArsR family) K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D OB2524 sinR; transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
C PadR family
D OB0567 hypothetical conserved protein K10947 K10947; PadR family transcriptional regulator
D OB0394 hypothetical conserved protein K10947 K10947; PadR family transcriptional regulator
D OB0948 hypothetical conserved protein K10947 K10947; PadR family transcriptional regulator
D OB3277 hypothetical conserved protein K10947 K10947; PadR family transcriptional regulator
C Other families
D OB1900 transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D OB1764 birA; biotin [acetyl-CoA carboxylase] ligase : transcriptional repressor of the biotin operon K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D OB1308 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D OB0350 transcriptional activator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D OB0762 nprA; transcriptional activator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D OB2597 transcriptional activator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D OB0154 hypothetical conserved protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D OB0056 transcriptional repressor of purine operon K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D OB1348 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D OB2548 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D OB2784 hypothetical conserved protein K02647 cdaR; carbohydrate diacid regulator
D OB2830 hypothetical conserved protein K02647 cdaR; carbohydrate diacid regulator
D OB0652 hypothetical conserved protein K01926 rex; redox-sensing transcriptional repressor
D OB1551 transcriptional pleiotropic repressor K03706 codY; transcriptional pleiotropic repressor
D OB0417 transcriptional regulator K07727 K07727; putative transcriptional regulator
D OB3139 transcriptional regulator K07729 K07729; putative transcriptional regulator
D OB1121 repressor protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D OB0622 hypothetical conserved protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D OB1883 glcT; transcriptional antiterminator K03480 glcT; transcriptional antiterminator
D OB2602 transcriptional antiterminator (BglG family) K03483 mtlR; mannitol operon transcriptional activator
D OB2764 transcriptional antiterminator of lichenan operon K03491 licR; probable licABCH operon transcriptional regulator
C Others
D OB1141 hypothetical conserved protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D OB2953 hypothetical conserved protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D OB0045 transcriptional pleiotropic regulator of transition state genes K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D OB0064 stage V sporulation protein T (transcriptional regulator) K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D OB3486 spo0J; stage 0 sporulation protein J (Soj antagonist : chromosome positioning and transport protein) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OB3488 hypothetical conserved protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OB2477 transcriptional antiterminator of glycerol uptake operon K02443 glpP; glycerol uptake operon antiterminator
D OB2720 transcriptional antiterminator of glycerol uptake operon K02443 glpP; glycerol uptake operon antiterminator
D OB1875 ahrC; arginine repressor (arginine metabolism regulator) K03402 argR; transcriptional regulator of arginine metabolism
D OB1970 hrcA; transcriptional repressor of class I heat-shock genes K03705 hrcA; heat-inducible transcriptional repressor
D OB0641 transcriptional activator of extracellular enzyme K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D OB0475 transcriptional activator of extracellular enzyme genes K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D OB0090 transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response
D OB2439 cggR; transcriptional repressor of gapA operon (central glycolytic genes regulator) K05311 cggR; central glycolytic genes regulator
D OB1203 med; transcriptional activator of comK gene K05519 med; transcriptional activator of comK gene
D OB1791 traP; tryptophan operon RNA-binding attenuation protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D OB1487 pyrR; uracil phosphoribosyltransferase (transcriptional attenuation of the pyrimidine operon) K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D OB2018 hypothetical protein K06314 rsfA; prespore-specific regulator
D OB2328 unknown conserved protein (partial) K06204 dksA; RNA polymerase-binding transcription factor
D OB2158 hypothetical conserved protein K07738 nrdR; transcriptional repressor NrdR
D OB1177 comK; competence transcription factor (CTF) K02250 comK; competence protein ComK
D OB3331 hypothetical conserved protein K02250 comK; competence protein ComK
D OB1461 hypothetical conserved protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
#
Classification taken and modified from TRANSFAC 7.0