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Transcription Machinery - Opisthorchis viverrini (Southeast Asian liver fluke)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E T265_00004 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E T265_13991 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E T265_05699 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
D Pol II specific subunits
E T265_09179 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E T265_10407 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E T265_06245 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E T265_14648 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E T265_09412 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E T265_07434 hypothetical protein K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E T265_02353 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E T265_13439 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_05686 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_13707 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_10984 hypothetical protein K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E T265_14113 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E T265_04366 hypothetical protein K03129 TAF4; transcription initiation factor TFIID subunit 4
E T265_10741 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E T265_05533 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E T265_01621 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E T265_10596 hypothetical protein K14649 TAF8; transcription initiation factor TFIID subunit 8
E T265_10196 hypothetical protein K14535 TAF9; transcription initiation factor TFIID subunit 9
E T265_08087 hypothetical protein K14535 TAF9; transcription initiation factor TFIID subunit 9
E T265_01404 hypothetical protein K03135 TAF11; transcription initiation factor TFIID subunit 11
E T265_14412 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
D TFIIE
E T265_14828 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFIIF
E T265_04996 hypothetical protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E T265_09693 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E T265_06498 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E T265_06756 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E T265_00261 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E T265_00138 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
E T265_04746 hypothetical protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E T265_03567 hypothetical protein K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E T265_03317 hypothetical protein K15131 MED11; mediator of RNA polymerase II transcription subunit 11
E T265_14195 hypothetical protein K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E T265_09421 hypothetical protein K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E T265_02780 hypothetical protein K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E T265_05387 hypothetical protein K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E T265_13903 hypothetical protein K15141 MED28; mediator of RNA polymerase II transcription subunit 28
D Middle
E T265_00356 hypothetical protein K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E T265_04180 hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E T265_11866 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E T265_03768 hypothetical protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E T265_09892 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E T265_06436 hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14
D CDK-module
E T265_03334 hypothetical protein K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E T265_03681 hypothetical protein K15161 CCNC; cyclin-C
E T265_10348 hypothetical protein K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E T265_00098 hypothetical protein K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E T265_00965 hypothetical protein K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E T265_06471 hypothetical protein K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E T265_12020 hypothetical protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E T265_15568 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein
E T265_14127 hypothetical protein K15127 TADA2B; transcriptional adapter 2-beta
E T265_15035 hypothetical protein K15127 TADA2B; transcriptional adapter 2-beta
E T265_14113 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E T265_04366 hypothetical protein K03129 TAF4; transcription initiation factor TFIID subunit 4
E T265_10741 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E T265_05533 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E T265_01621 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E T265_10196 hypothetical protein K14535 TAF9; transcription initiation factor TFIID subunit 9
E T265_08087 hypothetical protein K14535 TAF9; transcription initiation factor TFIID subunit 9
E T265_14412 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E T265_04064 hypothetical protein K11364 SGF29; SAGA-associated factor 29
E T265_01798 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E T265_12142 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E T265_00326 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E T265_04882 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E T265_11823 hypothetical protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E T265_02371 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E T265_03399 hypothetical protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E T265_07270 hypothetical protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E T265_02983 hypothetical protein K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E T265_12763 hypothetical protein K11652 ACTL6B; actin-like protein 6B
E T265_07301 hypothetical protein K11653 ARID1; AT-rich interactive domain-containing protein 1
E T265_03195 hypothetical protein K11765 ARID2; AT-rich interactive domain-containing protein 2
E T265_05798 hypothetical protein K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E T265_02371 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E T265_05065 hypothetical protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E T265_06123 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E T265_09833 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E T265_06784 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E T265_06732 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E T265_01349 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E T265_00534 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E T265_15517 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E T265_10243 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_15333 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_08568 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_15800 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_00446 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_12540 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_02881 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_03762 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_13111 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_13657 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_05025 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_10500 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E T265_09261 hypothetical protein K06100 SYMPK; symplekin
E T265_05761 hypothetical protein K15559 RTT103; regulator of Ty1 transposition protein 103
D PAF1 complex
E T265_13266 hypothetical protein K15175 CDC73; parafibromin
E T265_09719 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E T265_13585 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E T265_08694 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E T265_05441 hypothetical protein K15179 WHSC2; negative elongation factor A
E T265_02478 hypothetical protein K15180 COBRA1; negative elongation factor B
E T265_12692 hypothetical protein K15181 TH1L; negative elongation factor C/D
D Super elongation complex (SEC)
E T265_05456 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
E T265_10258 hypothetical protein K15186 EAF; ELL-associated factor
E T265_10272 hypothetical protein K15188 CCNT; cyclin T
E T265_09542 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
E T265_11575 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E T265_05456 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Brd4/P-TEFb complex
E T265_10272 hypothetical protein K15188 CCNT; cyclin T
E T265_09542 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
E T265_11575 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E T265_08082 hypothetical protein K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E T265_07793 hypothetical protein K15191 LARP7; La-related protein 7
E T265_10272 hypothetical protein K15188 CCNT; cyclin T
E T265_09542 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
E T265_11575 hypothetical protein K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
D Others
E T265_13336 hypothetical protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E T265_13305 hypothetical protein K21751 DR1; down-regulator of transcription 1
E T265_09762 hypothetical protein K15193 SPTY2D1; protein SPT2
E T265_07244 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E T265_10535 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E T265_08806 hypothetical protein K17498 SPN1; transcription factor SPN1
E T265_11992 hypothetical protein K17494 CSRNP; cysteine/serine-rich nuclear protein
E T265_14908 hypothetical protein K20826 RPAP1; RNA polymerase II-associated protein 1
E T265_14969 hypothetical protein K23002 RPAP3; RNA polymerase II-associated protein 3
E T265_03710 hypothetical protein K23326 CCNK; cyclin K
E T265_01252 hypothetical protein K24104 GPN; GPN-loop GTPase
E T265_08212 hypothetical protein K24104 GPN; GPN-loop GTPase
E T265_10686 hypothetical protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E T265_04576 hypothetical protein K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E T265_10182 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
D Pol III specific subunits
E T265_13274 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E T265_01600 hypothetical protein K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E T265_14634 hypothetical protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E T265_14169 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E T265_08878 hypothetical protein K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E T265_00110 hypothetical protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E T265_06245 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E T265_14648 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E T265_09412 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D TFIIIA
D TFIIIB
E T265_13439 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_05686 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_13707 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_10695 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E T265_15147 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E T265_00740 hypothetical protein K15199 GTF3C1; general transcription factor 3C polypeptide 1
E T265_01590 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E T265_05902 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E T265_05902 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E T265_01590 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E T265_04289 hypothetical protein K15208 SNAPC1; snRNA-activating protein complex subunit 1
E T265_07586 hypothetical protein K15210 SNAPC3; snRNA-activating protein complex subunit 3
D Octamer transcription factors
D Others
E T265_04591 hypothetical protein K20828 ZNF143_76; zinc finger protein 143/76
E T265_08330 hypothetical protein K20828 ZNF143_76; zinc finger protein 143/76
E T265_15650 hypothetical protein K20828 ZNF143_76; zinc finger protein 143/76
E T265_03128 hypothetical protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E T265_10182 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
D Pol I specific subunits
E T265_03178 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
D Pol I, II, III common subunits
E T265_06245 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E T265_14648 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E T265_09412 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D SL1/TIF-1B
E T265_13439 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_05686 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_13707 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E T265_15200 hypothetical protein K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
C Other transcription-related factors
D UBF
D Transcription initiation factors
E T265_07919 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E T265_08389 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E T265_06123 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E T265_09833 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E T265_00769 hypothetical protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E T265_02353 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E T265_14828 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024