+F Repair protein KO #

  DNA Repair and Recombination Proteins - Oxynema aestuarii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HCG48_18645 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HCG48_11780 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HCG48_15830 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HCG48_17405 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HCG48_02390 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_02950 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_05730 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_22045 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HCG48_18645 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HCG48_06880 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HCG48_11780 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HCG48_15830 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HCG48_15555 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HCG48_17405 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HCG48_11995 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HCG48_08420 nfi; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E HCG48_01800 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HCG48_04560 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HCG48_04075 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E HCG48_06555 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E HCG48_21245 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E HCG48_13335 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E HCG48_18750 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E HCG48_04550 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HCG48_08905 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HCG48_04075 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E HCG48_06555 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HCG48_20210 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HCG48_20215 DNA-directed RNA polymerase subunit gamma K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HCG48_20220 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HCG48_05980 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HCG48_00635 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HCG48_07975 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HCG48_03660 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HCG48_03580 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HCG48_16025 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HCG48_06800 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HCG48_14250 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HCG48_16970 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HCG48_17005 trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HCG48_22830 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HCG48_07655 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HCG48_13080 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HCG48_12180 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HCG48_04075 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E HCG48_06555 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HCG48_04550 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HCG48_08905 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HCG48_13855 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HCG48_10080 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E HCG48_10925 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HCG48_06795 recA; recombinase RecA K03553 recA; recombination protein RecA E HCG48_05555 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HCG48_02765 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HCG48_11435 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HCG48_07595 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E HCG48_15155 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E HCG48_19260 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HCG48_00560 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E HCG48_15630 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HCG48_06795 recA; recombinase RecA K03553 recA; recombination protein RecA E HCG48_05185 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HCG48_20050 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E HCG48_20805 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HCG48_01800 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HCG48_04560 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HCG48_10425 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HCG48_09595 recR; recombination protein RecR K06187 recR; recombination protein RecR E HCG48_21550 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HCG48_05555 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HCG48_02765 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HCG48_11435 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E HCG48_04125 cas1d; type I-D CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E HCG48_14650 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E HCG48_17285 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E HCG48_17290 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E HCG48_17695 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E HCG48_15155 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E HCG48_19260 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HCG48_00560 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E HCG48_15630 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HCG48_05095 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HCG48_21500 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HCG48_09810 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HCG48_25250 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F HCG48_02590 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HCG48_08005 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HCG48_01800 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HCG48_04560 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HCG48_10425 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HCG48_09595 recR; recombination protein RecR K06187 recR; recombination protein RecR F HCG48_04075 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F HCG48_06555 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HCG48_15300 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HCG48_21755 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HCG48_21245 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F HCG48_13335 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D HCG48_06795 recA; recombinase RecA K03553 recA; recombination protein RecA D HCG48_21550 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HCG48_13855 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HCG48_09765 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D HCG48_02390 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_02950 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_05730 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HCG48_22045 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024