+D GENES KO #

  KEGG Orthology (KO) - Polycladomyces abyssicola

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pabs00010] D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_19890 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_30690 fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D JIR001_30720 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D JIR001_28830 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D JIR001_28850 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D JIR001_08680 gapB; glyceraldehyde-3-phosphate dehydrogenase 2 K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D JIR001_28840 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D JIR001_24450 alpha-ribazole phosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D JIR001_28820 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D JIR001_08380 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D JIR001_21880 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D JIR001_04590 pdhA; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D JIR001_04600 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D JIR001_04610 pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_05350 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_17860 porA; pyruvate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_20880 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_17850 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20870 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_25460 ldh1; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_05540 aldA; aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_04520 pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D JIR001_28690 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D JIR001_19000 ptsG; PTS system glucose-specific EIICBA component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:pabs00020] D JIR001_24260 hypothetical protein K01647 CS; citrate synthase [EC:2.3.3.1] D JIR001_08420 citZ; citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D JIR001_05010 citB; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D JIR001_08430 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D JIR001_24710 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_17860 porA; pyruvate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_20880 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_17850 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20870 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_18680 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D JIR001_18690 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D JIR001_09560 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D JIR001_09570 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D JIR001_09550 sdhC; succinate dehydrogenase cytochrome B558 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D JIR001_09610 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_04520 pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D JIR001_04590 pdhA; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D JIR001_04600 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D JIR001_04610 pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_05350 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:pabs00030] D JIR001_19890 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D JIR001_28930 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D JIR001_29330 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D JIR001_02510 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D JIR001_19650 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D JIR001_22960 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D JIR001_30710 tal; putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D JIR001_30540 ywlF; putative sugar phosphate isomerase YwlF K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D JIR001_22120 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D JIR001_04890 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D JIR001_14580 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D JIR001_11000 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_29060 prs_2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D JIR001_00670 prs_1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D JIR001_13560 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D JIR001_29310 gluconate kinase K25031 gntK; gluconokinase [EC:2.7.1.12] D JIR001_13550 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D JIR001_30720 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D JIR001_30690 fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:pabs00040] D JIR001_13590 D-galactarate dehydratase K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D JIR001_13600 carbohydrate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D JIR001_03990 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D JIR001_23170 hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D JIR001_19650 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D JIR001_13580 hpaG; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] D JIR001_13610 ycbD; putative aldehyde dehydrogenase YcbD K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D JIR001_11180 carbohydrate kinase K22935 XK1; D-ribulokinase [EC:2.7.1.47] D JIR001_11160 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:pabs00051] D JIR001_07780 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D JIR001_25120 manA_2; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_08600 manA_1; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_17110 mannose-1-phosphate guanyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D JIR001_25160 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D JIR001_11160 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_30690 fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D JIR001_17280 mtlD; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D JIR001_04490 tagatose-6-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D JIR001_11150 hypothetical protein K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D JIR001_30720 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D JIR001_28830 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D JIR001_30540 ywlF; putative sugar phosphate isomerase YwlF K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D JIR001_04510 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_08570 hypothetical protein K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_04500 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D JIR001_08580 PTS fructose transporter subunit IIBC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D JIR001_17290 mtlF; mannitol-specific phosphotransferase enzyme IIA component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D JIR001_17310 mtlA; PTS system mannitol-specific EIICB component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:pabs00052] D JIR001_19870 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D JIR001_19880 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D JIR001_19860 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_30050 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_11120 pts35A; PTS galactitol transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D JIR001_11130 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D JIR001_11140 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D JIR001_21680 tagatose-6-phosphate kinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_21690 fructose-bisphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D JIR001_13520 dgoA; galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] C 00053 Ascorbate and aldarate metabolism [PATH:pabs00053] D JIR001_03990 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D JIR001_00510 epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D JIR001_26120 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D JIR001_26110 ulaA; PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D JIR001_23170 hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D JIR001_13580 hpaG; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] D JIR001_24760 yitF; putative isomerase YitF K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27] C 00500 Starch and sucrose metabolism [PATH:pabs00500] D JIR001_31550 ybbF; putative PTS system EIIBC component YbbF K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D JIR001_28260 PTS beta-glucoside transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D JIR001_28250 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03380 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03370 celB; permease IIC component K02761 celB; cellobiose PTS system EIIC component D JIR001_28690 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D JIR001_17120 hypothetical protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D JIR001_02550 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1] D JIR001_11230 hypothetical protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D JIR001_29370 treP; PTS system trehalose-specific EIIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D JIR001_29360 treA; trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_19890 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D JIR001_07780 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pabs00520] D JIR001_12050 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D JIR001_24700 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D JIR001_00420 PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D JIR001_23150 nagA-2; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D JIR001_24830 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D JIR001_23160 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D JIR001_07780 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D JIR001_23370 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_02270 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_02260 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D JIR001_00660 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D JIR001_31560 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D JIR001_20300 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30700 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_20310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D JIR001_30130 UDP-N-acetyl-D-glucosamine dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D JIR001_23250 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D JIR001_30150 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D JIR001_30170 UDP-N-acetyl glucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] D JIR001_19000 ptsG; PTS system glucose-specific EIICBA component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_03990 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D JIR001_19870 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D JIR001_19880 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D JIR001_19860 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_30050 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_00510 epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D JIR001_19890 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D JIR001_25120 manA_2; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_08600 manA_1; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_17110 mannose-1-phosphate guanyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D JIR001_25160 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D JIR001_23190 polysaccharide biosynthesis protein K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:pabs00620] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_17860 porA; pyruvate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_20880 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_17850 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20870 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_04590 pdhA; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D JIR001_04600 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D JIR001_04610 pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_05350 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_16300 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D JIR001_08380 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D JIR001_08360 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D JIR001_12220 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13700 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_20510 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13710 accC1; biotin carboxylase 1 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_20520 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_08350 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D JIR001_05540 aldA; aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D JIR001_16450 pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3] D JIR001_04290 pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3] D JIR001_25460 ldh1; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D JIR001_28530 ytbE; putative oxidoreductase YtbE K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D JIR001_08980 glyoxal reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D JIR001_31440 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D JIR001_05780 yetH; hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D JIR001_09350 fosmidomycin resistance protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D JIR001_20700 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D JIR001_05370 MBL fold hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D JIR001_30190 yqkJ; putative NAD-dependent malic enzyme 1 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D JIR001_08320 ytsJ; putative NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_09610 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D JIR001_02230 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D JIR001_04520 pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D JIR001_21880 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D JIR001_13170 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D JIR001_04900 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_09050 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pabs00630] D JIR001_04910 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_13170 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D JIR001_04900 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_24260 hypothetical protein K01647 CS; citrate synthase [EC:2.3.3.1] D JIR001_08420 citZ; citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D JIR001_05010 citB; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_08470 enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D JIR001_14130 mceE; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D JIR001_14140 propionyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D JIR001_14120 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D JIR001_14110 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D JIR001_13160 hypothetical protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D JIR001_31420 glcD; glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D JIR001_13150 glcE; glycolate oxidase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D JIR001_31410 glcF; putative glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D JIR001_13620 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D JIR001_23140 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D JIR001_01360 pfs; MTA/SAH nucleosidase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_30520 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D JIR001_11900 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D JIR001_11910 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D JIR001_11890 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04350 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D JIR001_18840 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D JIR001_13560 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D JIR001_19980 yjgC; putative oxidoreductase YjgC K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D JIR001_09700 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D JIR001_28920 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D JIR001_07290 kynB; kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:pabs00640] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_16300 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D JIR001_14050 bfmbAa; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_05330 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_14060 bfmbAb; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D JIR001_14070 bfmBB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_16900 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_30820 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_08360 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D JIR001_12220 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13700 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_20510 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13710 accC1; biotin carboxylase 1 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_20520 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_08350 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D JIR001_26290 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_14140 propionyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D JIR001_14130 mceE; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D JIR001_14120 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D JIR001_14110 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D JIR001_18690 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D JIR001_18680 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D JIR001_05840 iolA2; methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D JIR001_25460 ldh1; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D JIR001_16080 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D JIR001_28530 ytbE; putative oxidoreductase YtbE K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D JIR001_08980 glyoxal reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] C 00650 Butanoate metabolism [PATH:pabs00650] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_16290 hbd_2; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_23790 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_30840 hbd_3; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03850 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03860 hbd_1; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07550 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07560 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_27930 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_23690 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_29740 crt1; crotonase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_03720 crotonase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_03790 crotonase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_03890 hypothetical protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_20490 crt_2; enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_16900 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_30820 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_14030 buk; putative butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D JIR001_14010 phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D JIR001_08470 enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D JIR001_03700 catI; 3-oxoadipate--succinyl-CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D JIR001_03690 catJ; 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D JIR001_09560 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D JIR001_09570 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D JIR001_09550 sdhC; succinate dehydrogenase cytochrome B558 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D JIR001_26290 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_12210 gadD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_30060 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31110 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_17860 porA; pyruvate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_20880 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_17850 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20870 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20500 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D JIR001_23760 hypothetical protein K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D JIR001_08450 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D JIR001_25360 adh; alcohol dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D JIR001_09020 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D JIR001_09030 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:pabs00660] D JIR001_09020 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D JIR001_09030 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D JIR001_18690 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D JIR001_18680 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D JIR001_25500 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D JIR001_25510 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D JIR001_09060 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:pabs00562] D JIR001_26560 hisN; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D JIR001_05840 iolA2; methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D JIR001_28830 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pabs00190] D JIR001_30380 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D JIR001_30370 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D JIR001_30360 hypothetical protein K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D JIR001_21700 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D JIR001_30350 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D JIR001_30340 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D JIR001_30330 nuoJ; NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D JIR001_30320 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D JIR001_30310 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D JIR001_30300 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D JIR001_30290 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D JIR001_04850 dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D JIR001_07080 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D JIR001_09560 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D JIR001_09570 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D JIR001_09550 sdhC; succinate dehydrogenase cytochrome B558 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D JIR001_15900 menaquinol-cytochrome C reductase iron-sulfur subunit K03886 qcrA; quinol---cytochrome c reductase iron-sulfur subunit, bacillus type [EC:7.1.1.8] D JIR001_15910 cytochrome b6 K03887 qcrB; quinol---cytochrome c reductase cytochrome b subunit, bacillus type [EC:7.1.1.8] D JIR001_15920 qcrC; menaquinol-cytochrome c reductase cytochrome b/c subunit K03888 qcrC; quinol---cytochrome c reductase cytochrome c subunit, bacillus type [EC:7.1.1.8] D JIR001_25210 hypothetical protein K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_27240 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_27200 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D JIR001_30760 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D JIR001_10680 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D JIR001_27210 ctaE; cytochrome B oxidoreductase K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D JIR001_27220 cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D JIR001_27230 ctaC; cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D JIR001_09280 hypothetical protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D JIR001_14760 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_25200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_25220 hypothetical protein K02829 qoxD; cytochrome aa3-600 menaquinol oxidase subunit IV [EC:7.1.1.5] D JIR001_10850 cytochrome aa3 quinol oxidase subunit IV K02829 qoxD; cytochrome aa3-600 menaquinol oxidase subunit IV [EC:7.1.1.5] D JIR001_25230 cytochrome aa3 quinol oxidase subunit III K02828 qoxC; cytochrome aa3-600 menaquinol oxidase subunit III [EC:7.1.1.5] D JIR001_10840 cytochrome aa3 quinol oxidase subunit III K02828 qoxC; cytochrome aa3-600 menaquinol oxidase subunit III [EC:7.1.1.5] D JIR001_25240 qoxB_2; cytochrome ubiquinol oxidase subunit I K02827 qoxB; cytochrome aa3-600 menaquinol oxidase subunit I [EC:7.1.1.5] D JIR001_10830 qoxB_1; quinol oxidase subunit 1 K02827 qoxB; cytochrome aa3-600 menaquinol oxidase subunit I [EC:7.1.1.5] D JIR001_25250 qoxA_2; quinol oxidase subunit 2 K02826 qoxA; cytochrome aa3-600 menaquinol oxidase subunit II [EC:7.1.1.5] D JIR001_10820 qoxA_1; quinol oxidase subunit 2 K02826 qoxA; cytochrome aa3-600 menaquinol oxidase subunit II [EC:7.1.1.5] D JIR001_21060 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D JIR001_25430 cydA; cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D JIR001_21070 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D JIR001_25440 cydB; cytochrome c oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D JIR001_30430 ATP synthase F0F1 subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D JIR001_30410 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D JIR001_30420 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D JIR001_30440 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D JIR001_30400 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D JIR001_30470 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D JIR001_30450 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D JIR001_30460 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D JIR001_15320 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D JIR001_29240 ppaX; pyrophosphatase PpaX K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pabs00710] D JIR001_28840 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D JIR001_28850 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D JIR001_08680 gapB; glyceraldehyde-3-phosphate dehydrogenase 2 K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D JIR001_30720 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D JIR001_30690 fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D JIR001_22960 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D JIR001_30540 ywlF; putative sugar phosphate isomerase YwlF K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D JIR001_28830 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D JIR001_19650 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D JIR001_30710 tal; putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D JIR001_02230 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D JIR001_04520 pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D JIR001_21880 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:pabs00720] D JIR001_21880 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D JIR001_02230 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_09610 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D JIR001_09560 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D JIR001_09570 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D JIR001_09550 sdhC; succinate dehydrogenase cytochrome B558 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D JIR001_18680 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D JIR001_18690 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_17860 porA; pyruvate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_20880 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D JIR001_17850 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_20870 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D JIR001_08430 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D JIR001_05010 citB; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D JIR001_08360 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D JIR001_12220 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13700 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_20510 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13710 accC1; biotin carboxylase 1 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_20520 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_08350 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D JIR001_20550 enoyl-CoA hydratase K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] D JIR001_14130 mceE; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D JIR001_14110 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D JIR001_14120 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D JIR001_13770 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D JIR001_16300 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pabs00680] D JIR001_14360 yycR; putative zinc-type alcohol dehydrogenase-like protein YycR K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D JIR001_19980 yjgC; putative oxidoreductase YjgC K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D JIR001_09700 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D JIR001_30520 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D JIR001_02230 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_30720 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D JIR001_30690 fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_07770 FMN-binding glutamate synthase family protein K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D JIR001_16300 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24450 alpha-ribazole phosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D JIR001_28820 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D JIR001_13490 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_15130 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_13220 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19] D JIR001_13210 comB; putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D JIR001_23600 hypothetical protein K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:pabs00910] D JIR001_01320 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D JIR001_05850 nasC; assimilatory nitrate reductase catalytic subunit K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D JIR001_25700 ferredoxin--nitrite reductase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D JIR001_25390 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D JIR001_12010 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D JIR001_22340 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D JIR001_13680 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D JIR001_12330 gdhA_1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_15390 gdhA_2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_27150 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D JIR001_28230 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:pabs00920] D JIR001_27990 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D JIR001_27970 sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein D JIR001_27960 ssuB1; aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D JIR001_27980 ssuD; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D JIR001_25660 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D JIR001_18360 phosphoesterase RecJ-like protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D JIR001_25680 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D JIR001_29750 sulfite oxidase K17225 soxC; sulfane dehydrogenase subunit SoxC D JIR001_12870 hypothetical protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2] D JIR001_01520 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D JIR001_20580 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D JIR001_00890 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D JIR001_09540 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D JIR001_14970 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_22450 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_06880 cystathionine gamma-synthase K17217 mccB; cystathionine gamma-lyase / homocysteine desulfhydrase [EC:4.4.1.1 4.4.1.2] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pabs00061] D JIR001_08360 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D JIR001_12220 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13700 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_20510 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D JIR001_13710 accC1; biotin carboxylase 1 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_20520 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D JIR001_08350 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D JIR001_19400 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D JIR001_19420 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D JIR001_19430 3-oxoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_03840 3-oxoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_06180 fabHB; 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_19390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_23100 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_16870 fabG-2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_18090 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19410 fabG_3; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19990 fabG_4; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_23570 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_24230 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_04160 ytkK; putative oxidoreductase YtkK K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_06700 fabG_1; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_30180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D JIR001_28300 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D JIR001_03900 enoyl-ACP reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D JIR001_13670 desA1; acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D JIR001_16880 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_23610 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_26850 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_02390 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_09370 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation [PATH:pabs00062] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00071 Fatty acid degradation [PATH:pabs00071] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_27930 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_16900 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_30820 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_23640 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D JIR001_02340 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D JIR001_16880 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_23610 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_26850 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_02390 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_09370 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pabs00561] D JIR001_18840 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D JIR001_17330 dhaK1; dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D JIR001_17340 dhaK2; dihydroxyacetone kinase subunit L K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D JIR001_17350 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D JIR001_13400 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D JIR001_19440 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D JIR001_15540 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_04190 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_15450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D JIR001_21980 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_17790 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_24440 bis(5'-nucleosyl)-tetraphosphatase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_27610 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_13380 hypothetical protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D JIR001_21220 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_25830 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_27580 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00564 Glycerophospholipid metabolism [PATH:pabs00564] D JIR001_15550 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D JIR001_13410 glpD; aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D JIR001_15540 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_04190 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_15450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D JIR001_21980 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_17790 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_24440 bis(5'-nucleosyl)-tetraphosphatase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_27610 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D JIR001_28670 lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D JIR001_20800 glpQ_2; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D JIR001_01000 glpQ_1; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D JIR001_07640 PmtA; SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D JIR001_18560 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D JIR001_01450 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D JIR001_23440 hypothetical protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D JIR001_18000 pgsA_1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D JIR001_04110 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D JIR001_30200 pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D JIR001_04030 pcrB; heptaprenylglyceryl phosphate synthase K07094 pcrB; heptaprenylglyceryl phosphate synthase [EC:2.5.1.-] D JIR001_29230 acetyltransferase K24872 yvoF; heptaprenylglycerol acetyltransferase [EC:2.3.1.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:pabs00592] D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:pabs01040] D JIR001_13670 desA1; acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pabs00230] D JIR001_14520 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D JIR001_14580 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D JIR001_11000 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_29060 prs_2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D JIR001_00670 prs_1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D JIR001_03530 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D JIR001_03580 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D JIR001_03550 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D JIR001_03520 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D JIR001_03500 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D JIR001_03510 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D JIR001_03540 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D JIR001_03470 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D JIR001_03460 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D JIR001_03490 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D JIR001_03480 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D JIR001_03560 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D JIR001_11340 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D JIR001_04320 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_05940 yunD; putative metallophosphoesterase YunD K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_14590 deoD; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D JIR001_14600 punA; purine nucleoside phosphorylase 1 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D JIR001_20220 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D JIR001_00850 hprT; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D JIR001_00100 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D JIR001_15700 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D JIR001_09880 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D JIR001_29170 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D JIR001_03440 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D JIR001_19800 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D JIR001_12820 transcriptional regulator K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25090 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25080 nrdF; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D JIR001_11780 dGTPase K01129 dgt; dGTPase [EC:3.1.5.1] D JIR001_27560 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D JIR001_22980 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D JIR001_31700 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D JIR001_03950 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D JIR001_28310 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D JIR001_17890 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D JIR001_01960 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D JIR001_25660 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:pabs00240] D JIR001_20050 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_29660 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_20060 pyrAA; carbamoyl-phosphate synthase pyrimidine-specific small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_29670 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_20080 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D JIR001_20070 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D JIR001_29190 pyrD; dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D JIR001_20030 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D JIR001_20040 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D JIR001_18590 smbA; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D JIR001_15700 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D JIR001_10450 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D JIR001_30770 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D JIR001_15440 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D JIR001_04470 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D JIR001_04320 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_05940 yunD; putative metallophosphoesterase YunD K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_30510 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D JIR001_20100 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D JIR001_28310 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D JIR001_17890 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D JIR001_14610 pyn; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D JIR001_21970 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D JIR001_22430 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D JIR001_12820 transcriptional regulator K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25090 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25080 nrdF; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D JIR001_27560 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D JIR001_00350 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D JIR001_18290 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D JIR001_30650 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pabs00250] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_26320 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D JIR001_13340 aspG; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D JIR001_26260 asnO_2; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D JIR001_00160 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D JIR001_11810 hydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D JIR001_14560 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D JIR001_14740 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D JIR001_13330 ansB; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D JIR001_29490 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D JIR001_13120 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_29480 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_31700 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D JIR001_03480 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D JIR001_20080 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D JIR001_26290 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_12210 gadD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_30060 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31110 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_27150 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D JIR001_12330 gdhA_1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_15390 gdhA_2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_27830 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_20050 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_29660 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_20060 pyrAA; carbamoyl-phosphate synthase pyrimidine-specific small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_29670 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_24290 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D JIR001_03510 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D JIR001_23370 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_02270 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_03530 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pabs00260] D JIR001_18230 dapG; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_09490 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_18240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D JIR001_25810 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D JIR001_10640 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D JIR001_31150 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_06220 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_10630 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_30520 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D JIR001_18840 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D JIR001_24450 alpha-ribazole phosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D JIR001_28820 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D JIR001_13490 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_15130 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_17820 kbl; 8-amino-7-oxononanoate synthase 1 K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D JIR001_17830 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_11900 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D JIR001_11910 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D JIR001_11890 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04350 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D JIR001_01450 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D JIR001_26220 gbsB; alcohol dehydrogenase K11440 gbsB; choline dehydrogenase [EC:1.1.1.1] D JIR001_12350 gbsA_3; betaine-aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D JIR001_26210 gbsA_4; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D JIR001_31160 mdeA; methionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D JIR001_06880 cystathionine gamma-synthase K17217 mccB; cystathionine gamma-lyase / homocysteine desulfhydrase [EC:4.4.1.1 4.4.1.2] D JIR001_19570 sdaAA; putative L-serine dehydratase, alpha chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D JIR001_19580 sdaAB; putative L-serine dehydratase, beta chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D JIR001_06110 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D JIR001_10890 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D JIR001_15820 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D JIR001_15810 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D JIR001_09760 trpB-1; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D JIR001_28600 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D JIR001_28610 ectA; diaminobutyrate acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D JIR001_28590 ectC; L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] D JIR001_28580 ectoine hydroxylase K10674 ectD; ectoine hydroxylase [EC:1.14.11.55] C 00270 Cysteine and methionine metabolism [PATH:pabs00270] D JIR001_01520 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D JIR001_20580 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D JIR001_00890 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D JIR001_31160 mdeA; methionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D JIR001_06880 cystathionine gamma-synthase K17217 mccB; cystathionine gamma-lyase / homocysteine desulfhydrase [EC:4.4.1.1 4.4.1.2] D JIR001_22440 metC-2; cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D JIR001_06870 cysM; cysteine synthase K17216 mccA; cystathionine beta-synthase (O-acetyl-L-serine) [EC:2.5.1.134] D JIR001_28430 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D JIR001_28420 yitJ; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D JIR001_29960 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D JIR001_28290 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D JIR001_25570 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D JIR001_31500 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D JIR001_24600 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D JIR001_28050 mtnK; methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] D JIR001_20220 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D JIR001_16240 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D JIR001_28040 mtnA1; methylthioribose-1-phosphate isomerase 1 K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D JIR001_28070 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D JIR001_28090 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase K08965 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [EC:5.3.2.5] D JIR001_28080 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D JIR001_28060 mtnD; acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D JIR001_24370 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D JIR001_24400 putative methyltransferase K17462 yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-] D JIR001_04280 MerR family transcriptional regulator K17462 yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-] D JIR001_20430 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D JIR001_16070 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D JIR001_18230 dapG; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_09490 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_18240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D JIR001_25810 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D JIR001_09540 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D JIR001_14970 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_22450 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_22470 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D JIR001_10660 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D JIR001_28910 cdoA; cysteine dioxygenase K00456 CDO1; cysteine dioxygenase [EC:1.13.11.20] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_25460 ldh1; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D JIR001_08440 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D JIR001_19570 sdaAA; putative L-serine dehydratase, alpha chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D JIR001_19580 sdaAB; putative L-serine dehydratase, beta chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D JIR001_13490 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_15130 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:pabs00280] D JIR001_10660 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D JIR001_14020 yqiT; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D JIR001_14050 bfmbAa; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_05330 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_14060 bfmbAb; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D JIR001_14070 bfmBB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_16900 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_30820 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_23640 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D JIR001_02340 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_14140 propionyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D JIR001_14130 mceE; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D JIR001_14120 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D JIR001_14110 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D JIR001_02770 tartronate semialdehyde reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D JIR001_05840 iolA2; methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_20500 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D JIR001_23760 hypothetical protein K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pabs00290] D JIR001_06110 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D JIR001_10890 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D JIR001_25500 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D JIR001_25510 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D JIR001_09060 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D JIR001_09020 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D JIR001_09030 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D JIR001_09040 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D JIR001_13530 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D JIR001_09010 ilvD_1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D JIR001_10660 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D JIR001_14020 yqiT; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D JIR001_09050 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pabs00300] D JIR001_25810 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D JIR001_18230 dapG; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_09490 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_18240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D JIR001_18220 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D JIR001_16060 dapB_1; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D JIR001_29680 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D JIR001_05710 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D JIR001_26550 dipeptidase PepV K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D JIR001_19910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D JIR001_14710 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D JIR001_05720 dapH; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K05822 dapH; tetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89] D JIR001_05700 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D JIR001_20370 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D JIR001_17240 murF_1; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_20360 murF_2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_31920 murF_3; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:pabs00310] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_12360 patA; putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_12210 gadD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_30060 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31110 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31250 lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D JIR001_31220 L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3] D JIR001_31210 L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3] D JIR001_31260 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase K18012 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase [EC:1.4.1.11] D JIR001_30730 kce; 3-keto-5-aminohexanoate cleavage enzyme K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D JIR001_30740 kal; 3-aminobutyryl-CoA ammonia lyase K18014 kal; 3-aminobutyryl-CoA ammonia-lyase [EC:4.3.1.14] D JIR001_12810 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00220 Arginine biosynthesis [PATH:pabs00220] D JIR001_29650 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D JIR001_29490 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D JIR001_13120 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_29480 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_02220 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D JIR001_12250 allophanate hydrolase K01941 uca; urea carboxylase [EC:6.3.4.6] D JIR001_24290 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D JIR001_03510 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_20050 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_29660 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D JIR001_20060 pyrAA; carbamoyl-phosphate synthase pyrimidine-specific small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_29670 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D JIR001_12330 gdhA_1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_15390 gdhA_2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_30590 hypothetical protein K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D JIR001_29700 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D JIR001_29690 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D JIR001_29710 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D JIR001_29680 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D JIR001_05710 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:pabs00330] D JIR001_20890 cad; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D JIR001_12310 speB_1; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D JIR001_12560 speB_2; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D JIR001_31490 speB_3; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D JIR001_25570 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D JIR001_31500 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D JIR001_28290 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D JIR001_12360 patA; putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_02220 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D JIR001_22480 rocD; ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D JIR001_27310 proC_2; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D JIR001_27840 putA; proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D JIR001_27830 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_12810 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:pabs00340] D JIR001_29150 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D JIR001_29160 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D JIR001_29090 hisI; histidine biosynthesis bifunctional protein HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D JIR001_29110 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D JIR001_29120 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D JIR001_29100 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D JIR001_29130 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_29140 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D JIR001_12940 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D JIR001_04740 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D JIR001_04750 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D JIR001_04770 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] C 00350 Tyrosine metabolism [PATH:pabs00350] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05320 ldh; leucine dehydrogenase K00270 pdh; phenylalanine dehydrogenase [EC:1.4.1.20] D JIR001_21830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D JIR001_11450 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_13630 sbnG; staphyloferrin B biosynthesis citrate synthase SbnG K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D JIR001_12210 gadD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_30060 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31110 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:pabs00360] D JIR001_09750 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_07530 phenylacetate-coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D JIR001_03740 paaA_1; phenylacetic acid degradation protein K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D JIR001_07490 paaA_2; phenylacetate-CoA oxygenase subunit PaaA K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D JIR001_07500 hypothetical protein K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D JIR001_03770 phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D JIR001_07510 phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D JIR001_07520 phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D JIR001_23580 paaB1; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D JIR001_05310 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_16290 hbd_2; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_23790 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_30840 hbd_3; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03850 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03860 hbd_1; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07550 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07560 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_05320 ldh; leucine dehydrogenase K00270 pdh; phenylalanine dehydrogenase [EC:1.4.1.20] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_21830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D JIR001_12810 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00380 Tryptophan metabolism [PATH:pabs00380] D JIR001_07300 kynA; tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D JIR001_28920 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D JIR001_07290 kynB; kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D JIR001_07280 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_16410 yobN; putative L-amino-acid oxidase YobN K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_29820 hypothetical protein K00274 MAO; monoamine oxidase [EC:1.4.3.4] D JIR001_13680 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pabs00400] D JIR001_24100 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D JIR001_24630 aroA_2; protein AroA(G) K13853 aroG; 3-deoxy-7-phosphoheptulonate synthase / chorismate mutase [EC:2.5.1.54 5.4.99.5] D JIR001_15760 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D JIR001_13030 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D JIR001_22560 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D JIR001_02500 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D JIR001_15850 aroA_1; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D JIR001_15750 aroC1; chorismate synthase 1 K01736 aroC; chorismate synthase [EC:4.2.3.5] D JIR001_22240 anthranilate synthase component I K13503 trpEG; anthranilate synthase [EC:4.1.3.27] D JIR001_15780 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D JIR001_15800 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D JIR001_15790 trpC; indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D JIR001_15820 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D JIR001_15810 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D JIR001_09760 trpB-1; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D JIR001_15770 hypothetical protein K06208 aroH; chorismate mutase [EC:5.4.99.5] D JIR001_10620 yszB; UPF0735 ACT domain-containing protein YszB K06209 pheB; chorismate mutase [EC:5.4.99.5] D JIR001_15840 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D JIR001_10650 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05320 ldh; leucine dehydrogenase K00270 pdh; phenylalanine dehydrogenase [EC:1.4.1.20] D JIR001_09750 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:pabs00410] D JIR001_11880 panD_1; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D JIR001_14930 hypothetical protein K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D JIR001_16150 panD_2; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D JIR001_26290 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_16140 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_16900 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_30820 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D JIR001_05840 iolA2; methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:pabs00430] D JIR001_28910 cdoA; cysteine dioxygenase K00456 CDO1; cysteine dioxygenase [EC:1.13.11.20] D JIR001_01010 ggt_1; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_04880 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_06930 ggt_2; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_12150 yhxA; putative aminotransferase YhxA K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D JIR001_14560 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D JIR001_14740 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D JIR001_12330 gdhA_1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_15390 gdhA_2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D JIR001_16300 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:pabs00440] D JIR001_16510 hypothetical protein K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D JIR001_16500 thiamine pyrophosphate enzyme K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] D JIR001_16490 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] C 00450 Selenocompound metabolism [PATH:pabs00450] D JIR001_14970 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_22450 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D JIR001_22440 metC-2; cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D JIR001_28430 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D JIR001_28420 yitJ; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D JIR001_31160 mdeA; methionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D JIR001_05650 sufS; cysteine desulfurase SufS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D JIR001_29030 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D JIR001_25660 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D JIR001_00540 metG1; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pabs00460] D JIR001_13680 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D JIR001_01010 ggt_1; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_04880 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_06930 ggt_2; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_13340 aspG; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D JIR001_30520 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:pabs00470] D JIR001_02570 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D JIR001_12810 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D JIR001_09970 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D JIR001_24290 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D JIR001_03510 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D JIR001_09850 racE; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D JIR001_20340 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D JIR001_19910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D JIR001_14710 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D JIR001_31220 L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3] D JIR001_31210 L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3] C 00480 Glutathione metabolism [PATH:pabs00480] D JIR001_01010 ggt_1; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_04880 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_06930 ggt_2; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_12230 UPF0271 protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D JIR001_03180 ycsF; UPF0271 protein YcsF K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D JIR001_08430 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D JIR001_29330 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D JIR001_02510 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D JIR001_28930 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D JIR001_30900 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D JIR001_25570 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D JIR001_31500 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:pabs00511] D JIR001_23280 hypothetical protein K14459 HEX; hexosaminidase [EC:3.2.1.52] D JIR001_17320 beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:pabs00540] D JIR001_26360 hypothetical protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pabs00541] D JIR001_19860 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_30050 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D JIR001_03990 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D JIR001_00510 epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D JIR001_17230 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D JIR001_17220 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D JIR001_17200 spore coat protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D JIR001_17210 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D JIR001_25120 manA_2; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_08600 manA_1; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D JIR001_23190 polysaccharide biosynthesis protein K13010 per; perosamine synthetase [EC:2.6.1.102] D JIR001_00660 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D JIR001_30130 UDP-N-acetyl-D-glucosamine dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D JIR001_23250 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D JIR001_30150 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D JIR001_30170 UDP-N-acetyl glucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] C 00550 Peptidoglycan biosynthesis [PATH:pabs00550] D JIR001_20300 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30700 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_20310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D JIR001_10340 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D JIR001_20340 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D JIR001_20370 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D JIR001_09970 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D JIR001_17240 murF_1; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_20360 murF_2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_31920 murF_3; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_18570 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D JIR001_25010 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_05380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_20950 pgpB; phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_26060 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_16980 mraY_1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20350 mraY_2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20320 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D JIR001_23000 pbp2A_1; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_26490 pbpF_2; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_28220 pbp2A_2; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_04170 pbpF_1; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_31510 penicillin-binding protein K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D JIR001_23470 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D JIR001_20380 spoVD_1; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D JIR001_20390 spoVD_2; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D JIR001_14630 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_14900 dacB_1; D-alanyl-D-alanine carboxypeptidase DacB K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_00110 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_11680 hypothetical protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_21500 dacB_2; peptidase M15 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_22670 ampC; serine hydrolase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4] D JIR001_24580 pbp1b; membrane protein K03693 pbp1b; penicillin-binding protein 1B C 00552 Teichoic acid biosynthesis [PATH:pabs00552] D JIR001_25010 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_05380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_20950 pgpB; phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_26060 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_29980 lytR_1; LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D JIR001_30070 lytR_2; transcriptional regulator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D JIR001_21220 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_25830 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_27580 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:pabs00543] D JIR001_25150 hypothetical protein K20999 pslF; polysaccharide biosynthesis protein PslF D JIR001_01520 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pabs00730] D JIR001_04960 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D JIR001_09120 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D JIR001_21270 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_22860 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26330 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_21260 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D JIR001_21590 glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D JIR001_13830 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D JIR001_21570 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D JIR001_21600 thiE_2; thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D JIR001_25020 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D JIR001_09110 thiE_1; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D JIR001_02880 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D JIR001_19660 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D JIR001_19630 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D JIR001_01960 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pabs00740] D JIR001_14790 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D JIR001_14770 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D JIR001_14800 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D JIR001_14780 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D JIR001_18340 ribC; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D JIR001_21310 nfrA2; FMN reductase [NAD(P)H] K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39] D JIR001_06230 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D JIR001_25020 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D JIR001_14520 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D JIR001_15670 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pabs00750] D JIR001_05400 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D JIR001_31150 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_06220 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_10630 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D JIR001_00120 pdxS_1; pyridoxal 5'-phosphate synthase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D JIR001_10390 pdxS_2; pyridoxal 5'-phosphate synthase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D JIR001_00130 pdxT; pyridoxal 5'-phosphate synthase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:pabs00760] D JIR001_26320 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D JIR001_26300 nadA; quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D JIR001_26310 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D JIR001_05890 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D JIR001_14590 deoD; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D JIR001_14600 punA; purine nucleoside phosphorylase 1 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D JIR001_04320 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_05940 yunD; putative metallophosphoesterase YunD K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D JIR001_17380 hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D JIR001_22550 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D JIR001_10780 nadE; NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D JIR001_22620 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D JIR001_13860 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D JIR001_12210 gadD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_30060 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D JIR001_31110 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:pabs00770] D JIR001_09020 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D JIR001_09030 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D JIR001_09040 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D JIR001_13530 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D JIR001_09010 ilvD_1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D JIR001_16130 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D JIR001_20460 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D JIR001_04400 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D JIR001_16140 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D JIR001_00870 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D JIR001_19780 dfp; phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D JIR001_19510 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D JIR001_08660 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D JIR001_02430 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D JIR001_10660 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D JIR001_11880 panD_1; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D JIR001_14930 hypothetical protein K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D JIR001_16150 panD_2; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:pabs00780] D JIR001_28160 bioC; malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D JIR001_19390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_23100 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_16870 fabG-2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_18090 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19410 fabG_3; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19990 fabG_4; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_23570 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_24230 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_04160 ytkK; putative oxidoreductase YtkK K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_06700 fabG_1; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_30180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D JIR001_28300 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D JIR001_28170 bioH; transporter K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D JIR001_28180 bioF; putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D JIR001_28210 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D JIR001_28200 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D JIR001_28190 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D JIR001_16120 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:pabs00785] D JIR001_14080 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D JIR001_12410 lipM; octanoyltransferase LipM K23734 lipM; lipoyl(octanoyl) transferase [EC:2.3.1.181] D JIR001_06510 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04590 pdhA; pyruvate dehydrogenase E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D JIR001_04600 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D JIR001_04610 pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_05350 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D JIR001_14050 bfmbAa; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_05330 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D JIR001_14060 bfmbAb; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D JIR001_14070 bfmBB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D JIR001_11900 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D JIR001_11910 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D JIR001_11890 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D JIR001_04350 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pabs00790] D JIR001_15610 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D JIR001_22590 phosphodiesterase/alkaline phosphatase D K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D JIR001_00930 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D JIR001_00940 hypothetical protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D JIR001_00920 sul; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D JIR001_10330 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D JIR001_14790 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D JIR001_00900 pabA; glutamine amidotransferase K25575 pabA; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component II [EC:2.6.1.123] D JIR001_00910 pabC; 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D JIR001_08760 ygcM; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D JIR001_21250 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D JIR001_09750 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D JIR001_08750 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D JIR001_08740 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D JIR001_21330 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D JIR001_15310 moaA_2; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D JIR001_02840 moaA_1; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D JIR001_02850 cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D JIR001_02790 hypothetical protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D JIR001_02860 molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D JIR001_02830 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D JIR001_09740 moeA; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D JIR001_15300 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D JIR001_09460 mobA; putative molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:pabs00670] D JIR001_13770 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D JIR001_30520 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D JIR001_03550 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D JIR001_03560 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D JIR001_19750 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D JIR001_11890 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D JIR001_28430 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D JIR001_28420 yitJ; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D JIR001_03270 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pabs00860] D JIR001_10070 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D JIR001_18740 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_27130 hemL1; glutamate-1-semialdehyde 2,1-aminomutase 1 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_10270 hemL2; glutamate-1-semialdehyde 2,1-aminomutase 2 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_10120 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D JIR001_10100 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D JIR001_22950 coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D JIR001_02300 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D JIR001_25190 ywfI; putative heme-dependent peroxidase YwfI K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5] D JIR001_10110 hypothetical protein K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D JIR001_10090 hypothetical protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D JIR001_10130 transcriptional regulator K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D JIR001_25210 hypothetical protein K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_27240 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_14760 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_25200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_27650 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D JIR001_02970 cobalamin biosynthesis protein CbiX K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D JIR001_03020 cbiL; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D JIR001_02960 hypothetical protein K21479 cbiH60; cobalt-factor III methyltransferase [EC:2.1.1.272] D JIR001_03030 cbiF; cobalt-precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D JIR001_03040 cbiG; cobalamin biosynthesis protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D JIR001_02980 precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D JIR001_03000 cbiD; cobalt-precorrin-5B C(1)-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D JIR001_03010 cbiE; precorrin-6Y C5,15-methyltransferase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D JIR001_02990 cbiC; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D JIR001_03050 cbiA; cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D JIR001_04250 yvqK; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D JIR001_03060 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D JIR001_03070 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D JIR001_24990 cbiB; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D JIR001_25000 hypothetical protein K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D JIR001_25060 adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D JIR001_25050 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D JIR001_25470 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D JIR001_25040 alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D JIR001_25070 threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D JIR001_04580 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pabs00130] D JIR001_15660 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D JIR001_15670 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D JIR001_15650 menG; demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D JIR001_15680 mqnA; chorismate dehydratase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151] D JIR001_06960 mqnE_1; aminodeoxyfutalosine synthase K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D JIR001_06970 mqnE_2; aminodeoxyfutalosine synthase K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D JIR001_08860 mqnC; cyclic dehypoxanthine futalosine synthase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D JIR001_21830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pabs00900] D JIR001_13830 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D JIR001_18550 dxr1; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D JIR001_01490 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D JIR001_00620 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D JIR001_01500 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D JIR001_21100 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D JIR001_28380 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_15670 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D JIR001_11990 fni; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D JIR001_13800 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D JIR001_15640 hypothetical protein K00805 hepS; heptaprenyl diphosphate synthase component 1 [EC:2.5.1.30] D JIR001_15690 hepT; heptaprenyl diphosphate synthase component 2 K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D JIR001_18570 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:pabs00907] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_20500 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D JIR001_22960 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pabs00523] D JIR001_17230 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D JIR001_17220 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D JIR001_17200 spore coat protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D JIR001_17210 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D JIR001_17220 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:pabs00261] D JIR001_25660 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D JIR001_18230 dapG; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_09490 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D JIR001_18240 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D JIR001_18220 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D JIR001_16060 dapB_1; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pabs00521] D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_02320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D JIR001_25130 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D JIR001_26560 hisN; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D JIR001_17230 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D JIR001_17220 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D JIR001_17200 spore coat protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D JIR001_17210 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D JIR001_23360 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_29000 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31330 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D JIR001_31370 xylR; xylose repressor K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:pabs00525] D JIR001_17230 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D JIR001_17220 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pabs00401] D JIR001_15840 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D JIR001_19420 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D JIR001_16870 fabG-2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_18090 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19410 fabG_3; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19990 fabG_4; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_23570 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_24230 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_04160 ytkK; putative oxidoreductase YtkK K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_06700 fabG_1; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_28300 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:pabs00998] D JIR001_19400 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D JIR001_05090 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D JIR001_05100 sbnB; N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase SbnB K21721 sbnB; N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase [EC:1.5.1.51] D JIR001_16510 hypothetical protein K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D JIR001_16500 thiamine pyrophosphate enzyme K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:pabs00999] D JIR001_29960 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D JIR001_22560 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites [PATH:pabs00997] D JIR001_05160 sbnI; bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI K23371 sbnI; L-serine kinase (ATP) / ParB family transcriptional regulator, heme-responsive regulator [EC:2.7.1.225] D JIR001_05090 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D JIR001_05100 sbnB; N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase SbnB K21721 sbnB; N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase [EC:1.5.1.51] D JIR001_05130 sbnE; L-2,3-diaminopropanoate--citrate ligase SbnE K23372 sbnE; L-2,3-diaminopropanoate---citrate ligase [EC:6.3.2.54] D JIR001_05150 hypothetical protein K23373 sbnH; 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase [EC:4.1.1.117] D JIR001_05140 siderophore biosynthesis protein K23374 sbnF; 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase [EC:6.3.2.55] D JIR001_05110 siderophore biosynthesis protein IucA K23375 sbnC; staphyloferrin B synthase [EC:6.3.2.56] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:pabs00362] D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_03910 echA8; putative enoyl-CoA hydratase echA8 K07537 dch; cyclohexa-1,5-dienecarbonyl-CoA hydratase [EC:4.2.1.100] D JIR001_27930 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D JIR001_23680 butyryl-CoA dehydrogenase K16173 acd; glutaryl-CoA dehydrogenase (non-decarboxylating) [EC:1.3.99.32] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_16290 hbd_2; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_23790 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_30840 hbd_3; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03850 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_03860 hbd_1; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07550 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_07560 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:pabs00627] D JIR001_13680 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D JIR001_06430 hypothetical protein K16239 bsdC; 4-hydroxybenzoate decarboxylase subunit C [EC:4.1.1.61] D JIR001_15670 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:pabs00625] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_14360 yycR; putative zinc-type alcohol dehydrogenase-like protein YycR K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D JIR001_27720 dheII; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation D JIR001_27720 dheII; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D JIR001_16860 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_02360 fadA; acetyl-CoA acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D JIR001_27920 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:pabs00643] D JIR001_11450 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D JIR001_13680 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D JIR001_03700 catI; 3-oxoadipate--succinyl-CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D JIR001_03690 catJ; 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation D JIR001_12250 allophanate hydrolase K01941 uca; urea carboxylase [EC:6.3.4.6] C 00930 Caprolactam degradation [PATH:pabs00930] D JIR001_23770 acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D JIR001_05300 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D JIR001_23780 hypothetical protein K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:pabs00626] D JIR001_25270 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D JIR001_26830 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pabs03020] D JIR001_01660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D JIR001_01670 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D JIR001_02020 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D JIR001_19790 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D JIR001_30780 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors D JIR001_24040 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pabs03010] D JIR001_15470 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D JIR001_18610 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D JIR001_01800 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D JIR001_24550 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D JIR001_01910 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D JIR001_31780 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D JIR001_01700 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D JIR001_01880 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D JIR001_02090 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D JIR001_01730 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D JIR001_02010 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D JIR001_01690 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D JIR001_02000 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D JIR001_01870 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D JIR001_18330 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D JIR001_19300 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D JIR001_01830 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D JIR001_31760 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D JIR001_01780 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D JIR001_22280 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D JIR001_22080 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21 D JIR001_01620 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D JIR001_01770 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D JIR001_01740 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D JIR001_01750 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D JIR001_01860 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D JIR001_01890 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D JIR001_01640 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D JIR001_31720 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D JIR001_01630 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D JIR001_01610 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D JIR001_02080 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D JIR001_01840 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D JIR001_01930 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D JIR001_01940 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D JIR001_01810 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D JIR001_02030 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D JIR001_01900 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D JIR001_19260 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D JIR001_08930 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D JIR001_10540 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D JIR001_01790 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D JIR001_01760 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D JIR001_01850 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D JIR001_00680 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D JIR001_10560 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D JIR001_19620 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D JIR001_01820 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D JIR001_01920 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D JIR001_30660 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D JIR001_19460 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D JIR001_01580 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D JIR001_32000 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D JIR001_08920 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D JIR001_01680 rplGB; ribosome-associated protein L7Ae-like K07590 RP-L7A; large subunit ribosomal protein L7A D JIR001_01980 hypothetical protein K02875 RP-L14e; large subunit ribosomal protein L14e D JIR001_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D JIR001_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pabs00970] D JIR001_t00550 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00480 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00570 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00360 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00090 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D JIR001_t00170 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D JIR001_t00210 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D JIR001_t00440 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D JIR001_t00400 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D JIR001_t00500 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D JIR001_t00140 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00230 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00110 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D JIR001_t00190 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D JIR001_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00340 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00220 tRNA-His K14226 tRNA-His; tRNA His D JIR001_t00070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D JIR001_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D JIR001_t00350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00490 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00260 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D JIR001_t00240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D JIR001_t00040 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00450 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00050 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00430 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00330 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D JIR001_t00530 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D JIR001_t00410 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00270 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00320 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D JIR001_t00010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D JIR001_t00520 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00100 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00560 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00390 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D JIR001_t00510 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D JIR001_t00200 tRNA-Val K14237 tRNA-Val; tRNA Val D JIR001_t00120 tRNA-Val K14237 tRNA-Val; tRNA Val D JIR001_01510 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D JIR001_19100 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D JIR001_27680 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D JIR001_27670 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D JIR001_27690 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D JIR001_22790 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D JIR001_22900 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D JIR001_17400 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D JIR001_21930 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D JIR001_21920 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D JIR001_08900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D JIR001_00140 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D JIR001_01530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D JIR001_00540 metG1; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D JIR001_19750 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D JIR001_10320 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D JIR001_22520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D JIR001_20160 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D JIR001_00960 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D JIR001_31470 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D JIR001_18530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D JIR001_22910 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D JIR001_09210 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D JIR001_09220 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D JIR001_24570 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D JIR001_22290 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pabs03060] D JIR001_01950 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D JIR001_01590 hypothetical protein K03073 secE; preprotein translocase subunit SecE D JIR001_28800 secG; putative protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D JIR001_11300 hypothetical protein K03072 secD; preprotein translocase subunit SecD D JIR001_11310 hypothetical protein K03074 secF; preprotein translocase subunit SecF D JIR001_11090 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D JIR001_31970 misCA; membrane protein insertase MisCA K03217 yidC; YidC/Oxa1 family membrane protein insertase D JIR001_29850 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D JIR001_19310 ftsY_1; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D JIR001_19330 ftsY_2; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D JIR001_22700 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D JIR001_27740 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA D JIR001_03300 tatC2; Sec-independent protein translocase protein TatCy K03118 tatC; sec-independent protein translocase protein TatC D JIR001_19250 sipS_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_27290 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_00550 sipS_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_06170 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_20130 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pabs04122] D JIR001_21270 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_22860 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26330 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26740 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D JIR001_15310 moaA_2; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D JIR001_02840 moaA_1; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D JIR001_02790 hypothetical protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D JIR001_02780 moeB; thiamine/molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D JIR001_02850 cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D JIR001_02860 molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D JIR001_21260 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D JIR001_21580 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D JIR001_05900 hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome C 03018 RNA degradation [PATH:pabs03018] D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D JIR001_18320 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D JIR001_28760 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D JIR001_17980 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D JIR001_30680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D JIR001_17900 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D JIR001_18210 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_22190 dnaK_2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01040 dnaK_1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01050 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_03320 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D JIR001_17700 RNA-binding protein Hfq K03666 hfq; host factor-I protein B B 09124 Replication and repair C 03030 DNA replication [PATH:pabs03030] D JIR001_08280 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D JIR001_18450 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D JIR001_00280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D JIR001_00370 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D JIR001_22370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D JIR001_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D JIR001_31710 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D JIR001_21870 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_07820 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D JIR001_19230 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pabs03410] D JIR001_26930 nth_2; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D JIR001_27440 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D JIR001_27480 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D JIR001_08640 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D JIR001_27540 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D JIR001_20790 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_11330 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pabs03420] D JIR001_00710 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D JIR001_29390 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D JIR001_29400 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D JIR001_09450 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D JIR001_15160 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_04040 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_05970 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D JIR001_24040 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:pabs03430] D JIR001_17740 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D JIR001_31230 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D JIR001_09300 mutSB; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D JIR001_17730 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D JIR001_15160 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_04040 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_05970 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_13780 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D JIR001_13790 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D JIR001_11330 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_08280 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D JIR001_18450 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D JIR001_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D JIR001_00280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D JIR001_22370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D JIR001_00370 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:pabs03440] D JIR001_11330 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D JIR001_21940 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D JIR001_00300 recR; recombination protein RecR K06187 recR; recombination protein RecR D JIR001_17960 recA; protein RecA K03553 recA; recombination protein RecA D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_11040 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D JIR001_11050 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D JIR001_11030 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D JIR001_19560 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D JIR001_22840 recD; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D JIR001_08280 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D JIR001_18450 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D JIR001_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D JIR001_00280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D JIR001_22370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D JIR001_00370 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D JIR001_19770 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:pabs03450] D JIR001_16170 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D JIR001_16200 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D JIR001_16230 DNA polymerase domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pabs02010] D JIR001_27990 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D JIR001_27970 sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein D JIR001_27960 ssuB1; aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D JIR001_05510 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D JIR001_05520 yvgM; putative molybdenum transport system permease protein YvgM K02018 modB; molybdate transport system permease protein D JIR001_13090 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D JIR001_13110 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D JIR001_13100 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D JIR001_12290 ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein D JIR001_12270 hypothetical protein K11070 potC; spermidine/putrescine transport system permease protein D JIR001_12280 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D JIR001_12260 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D JIR001_28470 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D JIR001_28490 hypothetical protein K05846 opuBD; osmoprotectant transport system permease protein D JIR001_28480 glycine/betaine ABC transporter ATPase K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D JIR001_29280 msmX; ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D JIR001_24500 putative ABC transporter-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D JIR001_24490 hypothetical protein K10237 thuF; trehalose/maltose transport system permease protein D JIR001_24480 ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D JIR001_23200 sugar ABC transporter substrate-binding protein K17244 chiE; putative chitobiose transport system substrate-binding protein D JIR001_23210 lactose ABC transporter permease K17245 chiF; putative chitobiose transport system permease protein D JIR001_23220 lactose ABC transporter permease K17246 chiG; putative chitobiose transport system permease protein D JIR001_18160 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D JIR001_18140 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D JIR001_18130 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D JIR001_18150 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D JIR001_17500 ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D JIR001_17490 sugar ABC transporter permease K17316 gtsB; glucose/mannose transport system permease protein D JIR001_17480 ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein D JIR001_08500 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D JIR001_08510 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D JIR001_08520 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D JIR001_08530 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D JIR001_08540 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D JIR001_29900 basic amino acid ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D JIR001_29890 glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein D JIR001_29880 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_27780 glnH; ABC transporter glutamine-binding protein GlnH K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D JIR001_27760 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D JIR001_27770 glnM; putative glutamine ABC transporter permease protein GlnM K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D JIR001_27790 glnQ; glutamine transport ATP-binding protein GlnQ K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_11820 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D JIR001_11830 yckA; putative amino-acid ABC transporter permease protein YckA K10009 tcyB; L-cystine transport system permease protein D JIR001_11840 arginine ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_23740 ABC transporter ATP-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D JIR001_23730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D JIR001_23720 amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D JIR001_23710 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D JIR001_23700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D JIR001_30010 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D JIR001_30020 ABC transporter permease K02072 metI; D-methionine transport system permease protein D JIR001_30030 metN3; methionine import ATP-binding protein MetN 3 K02071 metN; D-methionine transport system ATP-binding protein D JIR001_07740 oppA_3; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_19090 oppA_4; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_31460 oppA_5; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06790 oppA_1; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06800 oppA_2; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09500 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09510 oppB_2; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein D JIR001_06810 oppB_1; peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D JIR001_06820 oppC; diguanylate cyclase K15582 oppC; oligopeptide transport system permease protein D JIR001_09520 dppC; dipeptide transport system permease protein DppC K15582 oppC; oligopeptide transport system permease protein D JIR001_06830 oppD_1; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_09530 oppD_2; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_06840 oppF; ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D JIR001_21480 dppE; dipeptide-binding protein DppE K16199 dppE; dipeptide transport system substrate-binding protein D JIR001_28400 iron citrate ABC transporter substrate-binding protein K23181 fecB; ferric citrate transport system substrate-binding protein D JIR001_05080 yfmC; Fe(3+)-citrate-binding protein YfmC K23181 fecB; ferric citrate transport system substrate-binding protein D JIR001_05060 yfmE; Fe(3+)-citrate import system permease protein YfmE K23182 fecD; ferric citrate transport system permease protein D JIR001_00210 adhesin K09815 znuA; zinc transport system substrate-binding protein D JIR001_00230 znuB; zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D JIR001_00220 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D JIR001_25550 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D JIR001_02060 ecfT; energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D JIR001_02040 ecfA_1; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D JIR001_02050 ecfA_2; energy-coupling factor transporter ATP-binding protein EcfA K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D JIR001_29460 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D JIR001_29470 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D JIR001_11630 multidrug ABC transporter permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D JIR001_11640 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D JIR001_25420 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D JIR001_25410 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) [PATH:pabs02060] D JIR001_28280 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D JIR001_28270 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D JIR001_19000 ptsG; PTS system glucose-specific EIICBA component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D JIR001_00420 PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D JIR001_31550 ybbF; putative PTS system EIIBC component YbbF K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D JIR001_29370 treP; PTS system trehalose-specific EIIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D JIR001_08580 PTS fructose transporter subunit IIBC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D JIR001_17290 mtlF; mannitol-specific phosphotransferase enzyme IIA component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D JIR001_17310 mtlA; PTS system mannitol-specific EIICB component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D JIR001_28260 PTS beta-glucoside transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D JIR001_28250 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03380 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03370 celB; permease IIC component K02761 celB; cellobiose PTS system EIIC component D JIR001_11120 pts35A; PTS galactitol transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D JIR001_11130 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D JIR001_11140 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D JIR001_26120 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D JIR001_26110 ulaA; PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D JIR001_04500 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D JIR001_04510 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_08570 hypothetical protein K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_04490 tagatose-6-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D JIR001_11150 hypothetical protein K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:pabs03070] D JIR001_21190 MSHA biogenesis protein MshG K02455 gspF; general secretion pathway protein F D JIR001_21170 hypothetical protein K02457 gspH; general secretion pathway protein H D JIR001_21200 hypothetical protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D JIR001_11300 hypothetical protein K03072 secD; preprotein translocase subunit SecD D JIR001_11310 hypothetical protein K03074 secF; preprotein translocase subunit SecF D JIR001_01590 hypothetical protein K03073 secE; preprotein translocase subunit SecE D JIR001_28800 secG; putative protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D JIR001_01950 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D JIR001_11090 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D JIR001_31970 misCA; membrane protein insertase MisCA K03217 yidC; YidC/Oxa1 family membrane protein insertase D JIR001_29850 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D JIR001_19330 ftsY_2; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D JIR001_19310 ftsY_1; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D JIR001_22700 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D JIR001_27740 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA D JIR001_03300 tatC2; Sec-independent protein translocase protein TatCy K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:pabs02020] D JIR001_08490 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D JIR001_08480 phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D JIR001_22590 phosphodiesterase/alkaline phosphatase D K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D JIR001_08500 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D JIR001_25580 hypothetical protein K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_31670 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_05590 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D JIR001_05580 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D JIR001_05570 tricarboxylic transport TctC K07795 tctC; putative tricarboxylic transport membrane protein D JIR001_15110 resE; sensor histidine kinase ResE K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D JIR001_15100 resD; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D JIR001_14760 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_25200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_31610 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D JIR001_31600 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D JIR001_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D JIR001_26980 hpk5; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D JIR001_26990 rrp5; DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D JIR001_07450 hypothetical protein K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D JIR001_30750 spo0F; sporulation initiation phosphotransferase F K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D JIR001_13910 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D JIR001_03150 hypothetical protein K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3] D JIR001_03140 malR_1; transcriptional regulatory protein MalR K11615 malR; two-component system, CitB family, response regulator MalR D JIR001_30190 yqkJ; putative NAD-dependent malic enzyme 1 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D JIR001_08320 ytsJ; putative NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D JIR001_29950 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D JIR001_01080 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D JIR001_01090 type II/IV secretion system-related protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D JIR001_01100 hypothetical protein K12510 tadB; tight adherence protein B D JIR001_01110 hypothetical protein K12511 tadC; tight adherence protein C D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_04730 atoE; short-chain fatty acids transporter K02106 atoE; short-chain fatty acids transporter D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_03130 dctA; C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D JIR001_28870 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D JIR001_24290 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D JIR001_21060 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D JIR001_25430 cydA; cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D JIR001_21070 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D JIR001_25440 cydB; cytochrome c oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D JIR001_10610 phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D JIR001_10220 phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D JIR001_02220 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pabs02024] D JIR001_17700 RNA-binding protein Hfq K03666 hfq; host factor-I protein D JIR001_26720 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D JIR001_23740 ABC transporter ATP-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D JIR001_23730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D JIR001_23720 amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D JIR001_23710 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D JIR001_23700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D JIR001_16880 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_23610 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_26850 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_02390 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_09370 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_14770 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D JIR001_07740 oppA_3; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_19090 oppA_4; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_31460 oppA_5; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06790 oppA_1; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06800 oppA_2; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09500 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09510 oppB_2; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein D JIR001_06810 oppB_1; peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D JIR001_06820 oppC; diguanylate cyclase K15582 oppC; oligopeptide transport system permease protein D JIR001_09520 dppC; dipeptide transport system permease protein DppC K15582 oppC; oligopeptide transport system permease protein D JIR001_06830 oppD_1; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_09530 oppD_2; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_06840 oppF; ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D JIR001_31970 misCA; membrane protein insertase MisCA K03217 yidC; YidC/Oxa1 family membrane protein insertase D JIR001_01590 hypothetical protein K03073 secE; preprotein translocase subunit SecE D JIR001_28800 secG; putative protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D JIR001_01950 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D JIR001_11090 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D JIR001_29850 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D JIR001_19330 ftsY_2; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D JIR001_19310 ftsY_1; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D JIR001_29950 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D JIR001_30750 spo0F; sporulation initiation phosphotransferase F K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D JIR001_13910 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D JIR001_04060 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly [PATH:pabs02040] D JIR001_11820 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D JIR001_21860 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor D JIR001_28870 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:pabs04980] D JIR001_04250 yvqK; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D JIR001_30810 methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D JIR001_28430 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:pabs01501] D JIR001_12050 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D JIR001_24700 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D JIR001_07740 oppA_3; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_19090 oppA_4; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_31460 oppA_5; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06790 oppA_1; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06800 oppA_2; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09500 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09510 oppB_2; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein D JIR001_06810 oppB_1; peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D JIR001_06820 oppC; diguanylate cyclase K15582 oppC; oligopeptide transport system permease protein D JIR001_09520 dppC; dipeptide transport system permease protein DppC K15582 oppC; oligopeptide transport system permease protein D JIR001_06830 oppD_1; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_09530 oppD_2; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_06840 oppF; ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D JIR001_24580 pbp1b; membrane protein K03693 pbp1b; penicillin-binding protein 1B D JIR001_23000 pbp2A_1; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_26490 pbpF_2; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_28220 pbp2A_2; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_04170 pbpF_1; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_23470 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:pabs01502] D JIR001_09970 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D JIR001_02570 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D JIR001_17240 murF_1; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_20360 murF_2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_31920 murF_3; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D JIR001_16980 mraY_1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20350 mraY_2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20320 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pabs01503] D JIR001_02110 cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D JIR001_04720 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D JIR001_25580 hypothetical protein K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_31670 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pabs01000] C 01001 Protein kinases [BR:pabs01001] D JIR001_19670 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D JIR001_27250 rsbT; serine/threonine-protein kinase RsbT K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D JIR001_02620 rsbW; serine-protein kinase RsbW K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D JIR001_08490 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D JIR001_15110 resE; sensor histidine kinase ResE K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D JIR001_31610 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D JIR001_26980 hpk5; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D JIR001_07450 hypothetical protein K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D JIR001_03150 hypothetical protein K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:pabs01009] D JIR001_20430 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_19680 stp; serine/threonine phosphatase stp K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:pabs01002] D JIR001_20130 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D JIR001_22270 gpr; germination protease K06012 gpr; spore protease [EC:3.4.24.78] D JIR001_20260 sporulation sigma-E factor-processing peptidase K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D JIR001_03440 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D JIR001_21080 peptidase C26 K07010 K07010; putative glutamine amidotransferase D JIR001_21490 peptidase P60 K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13] D JIR001_03530 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D JIR001_27150 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D JIR001_23370 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_02270 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D JIR001_26260 asnO_2; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D JIR001_00160 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D JIR001_21720 protease K05520 yhbO; deglycase [EC:3.5.1.124] D JIR001_05620 protease K05520 yhbO; deglycase [EC:3.5.1.124] D JIR001_04090 yhcS; hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D JIR001_05170 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D JIR001_15350 hypothetical protein K07052 K07052; CAAX protease family protein D JIR001_23130 CAAX amino protease K07052 K07052; CAAX protease family protein D JIR001_30630 hypothetical protein K07052 K07052; CAAX protease family protein D JIR001_00310 hypothetical protein K07052 K07052; CAAX protease family protein D JIR001_09640 hypothetical protein K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D JIR001_17870 diguanylate cyclase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D JIR001_31120 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D JIR001_26550 dipeptidase PepV K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D JIR001_14160 yqjE; hypothetical protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D JIR001_24200 yhaA; putative amidohydrolase YhaA K01436 yhaA; amidohydrolase [EC:3.5.1.-] D JIR001_05700 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D JIR001_06450 lytH; L-Ala--D-Glu endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D JIR001_01970 map_1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D JIR001_10700 map_2; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D JIR001_13040 pepQ_1; peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D JIR001_24360 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D JIR001_06980 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D JIR001_25750 carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D JIR001_16280 vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D JIR001_00860 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D JIR001_24340 yhfE; putative aminopeptidase YhfE K01269 yhfE; aminopeptidase [EC:3.4.11.-] D JIR001_10530 stage IV sporulation protein FB K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D JIR001_18540 putative zinc metalloprotease Lmo1318 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D JIR001_25580 hypothetical protein K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_31670 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_24090 hypothetical protein K01342 aprE; subtilisin [EC:3.4.21.62] D JIR001_29970 hypothetical protein K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_03610 thermitase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_09320 alkaline serine protease K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_09330 thermitase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_26750 hypothetical protein K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D JIR001_23480 aprX_1; serine protease AprX K17734 aprX; serine protease AprX [EC:3.4.21.-] D JIR001_27320 aprX_2; serine protease AprX K17734 aprX; serine protease AprX [EC:3.4.21.-] D JIR001_03330 hypothetical protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D JIR001_14630 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_14900 dacB_1; D-alanyl-D-alanine carboxypeptidase DacB K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_00110 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_22670 ampC; serine hydrolase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4] D JIR001_11680 hypothetical protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_21500 dacB_2; peptidase M15 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_14250 clpP_2; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D JIR001_28880 clpP1; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D JIR001_09910 clpP_1; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D JIR001_26430 peptidase K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D JIR001_09950 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D JIR001_09940 ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D JIR001_19480 ylbL; hypothetical protein K07177 K07177; Lon-like protease D JIR001_16340 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D JIR001_19250 sipS_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_27290 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_00550 sipS_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_06170 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D JIR001_29420 ctpB; carboxy-terminal processing protease CtpB K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D JIR001_13890 spoIVB; SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D JIR001_18640 clpQ; ATP-dependent protease subunit ClpQ K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D JIR001_01010 ggt_1; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_04880 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D JIR001_06930 ggt_2; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 01003 Glycosyltransferases [BR:pabs01003] D JIR001_21220 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_25830 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_27580 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D JIR001_26500 hasA; hyaluronan synthase K00752 hasA; hyaluronan synthase [EC:2.4.1.212] D JIR001_24580 pbp1b; membrane protein K03693 pbp1b; penicillin-binding protein 1B D JIR001_23000 pbp2A_1; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_26490 pbpF_2; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_28220 pbp2A_2; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_04170 pbpF_1; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_31510 penicillin-binding protein K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D JIR001_25150 hypothetical protein K20999 pslF; polysaccharide biosynthesis protein PslF C 01005 Lipopolysaccharide biosynthesis proteins [BR:pabs01005] D JIR001_26360 hypothetical protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pabs01011] D JIR001_20300 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_30700 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D JIR001_20310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D JIR001_10340 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D JIR001_20340 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D JIR001_20370 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D JIR001_09970 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D JIR001_02570 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D JIR001_09850 racE; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D JIR001_16980 mraY_1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20350 mraY_2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D JIR001_20320 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D JIR001_25010 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_05380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_20950 pgpB; phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_26060 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D JIR001_24580 pbp1b; membrane protein K03693 pbp1b; penicillin-binding protein 1B D JIR001_23000 pbp2A_1; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_26490 pbpF_2; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_28220 pbp2A_2; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_04170 pbpF_1; penicillin-binding protein 1F K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D JIR001_31510 penicillin-binding protein K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D JIR001_23470 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D JIR001_20380 spoVD_1; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D JIR001_20390 spoVD_2; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D JIR001_09600 penicillin-binding protein 2 K21467 pbpC; penicillin-binding protein 3 D JIR001_22690 pbpI; penicillin-binding protein 4B K21468 pbpI; penicillin-binding protein 4B D JIR001_14630 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_14900 dacB_1; D-alanyl-D-alanine carboxypeptidase DacB K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_00110 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D JIR001_11680 hypothetical protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_21500 dacB_2; peptidase M15 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D JIR001_22670 ampC; serine hydrolase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4] D JIR001_06450 lytH; L-Ala--D-Glu endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D JIR001_04090 yhcS; hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D JIR001_05170 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D JIR001_08670 transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D JIR001_22740 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D JIR001_09380 hypothetical protein K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D JIR001_15420 hypothetical protein K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D JIR001_25860 sleB_2; spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D JIR001_09270 sleB_1; spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D JIR001_30240 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D JIR001_02110 cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D JIR001_04720 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:pabs01004] D JIR001_19420 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D JIR001_19430 3-oxoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_03840 3-oxoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_06180 fabHB; 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D JIR001_19390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_23100 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D JIR001_16870 fabG-2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_18090 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19410 fabG_3; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_19990 fabG_4; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_23570 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_24230 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_04160 ytkK; putative oxidoreductase YtkK K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_06700 fabG_1; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D JIR001_30180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D JIR001_28300 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D JIR001_03900 enoyl-ACP reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D JIR001_04630 thioesterase K12500 tesC; thioesterase III [EC:3.1.2.-] D JIR001_13670 desA1; acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D JIR001_18820 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_23830 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_24590 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_05250 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D JIR001_16880 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_23610 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_26850 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_02390 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_09370 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_13060 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D JIR001_21840 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D JIR001_23530 long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D JIR001_19440 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D JIR001_15540 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_04190 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D JIR001_15450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:pabs01008] D JIR001_06360 bcsA; putative chalcone synthase K16167 bpsA; alkylresorcinol/alkylpyrone synthase D JIR001_06370 ypbQ; hypothetical protein K16168 bpsB; methyltransferase C 01006 Prenyltransferases [BR:pabs01006] D JIR001_13800 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D JIR001_15640 hypothetical protein K00805 hepS; heptaprenyl diphosphate synthase component 1 [EC:2.5.1.30] D JIR001_15690 hepT; heptaprenyl diphosphate synthase component 2 K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D JIR001_18570 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D JIR001_17710 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D JIR001_15660 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D JIR001_25210 hypothetical protein K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_27240 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pabs01007] D JIR001_01510 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D JIR001_24570 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D JIR001_22290 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D JIR001_01530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D JIR001_31470 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D JIR001_00540 metG1; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D JIR001_20160 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D JIR001_10320 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D JIR001_22520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D JIR001_00960 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D JIR001_22900 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D JIR001_17400 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D JIR001_22910 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D JIR001_21930 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D JIR001_21920 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D JIR001_00140 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D JIR001_18530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D JIR001_08900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D JIR001_22790 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D JIR001_09210 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D JIR001_09220 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D JIR001_16310 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D JIR001_15830 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_05050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D JIR001_17820 kbl; 8-amino-7-oxononanoate synthase 1 K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D JIR001_28180 bioF; putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D JIR001_22480 rocD; ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D JIR001_29680 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D JIR001_05710 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D JIR001_12200 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D JIR001_26290 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D JIR001_28600 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D JIR001_12360 patA; putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D JIR001_28210 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D JIR001_12150 yhxA; putative aminotransferase YhxA K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D JIR001_18740 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_27130 hemL1; glutamate-1-semialdehyde 2,1-aminomutase 1 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_10270 hemL2; glutamate-1-semialdehyde 2,1-aminomutase 2 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D JIR001_12810 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D JIR001_10660 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D JIR001_16490 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D JIR001_23190 polysaccharide biosynthesis protein K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 [BR:pabs00199] C 00194 Photosynthesis proteins [BR:pabs00194] D JIR001_30400 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D JIR001_30410 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D JIR001_30420 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D JIR001_30430 ATP synthase F0F1 subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D JIR001_30440 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D JIR001_30450 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D JIR001_30460 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D JIR001_30470 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D JIR001_30480 hypothetical protein K02116 atpI; ATP synthase protein I D JIR001_30490 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pabs03000] D JIR001_16630 GntR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D JIR001_04480 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D JIR001_30220 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D JIR001_16640 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D JIR001_21900 tlyC; hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D JIR001_24610 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D JIR001_07150 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D JIR001_29380 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D JIR001_26580 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D JIR001_08330 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D JIR001_09390 fadR; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D JIR001_07480 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D JIR001_09690 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D JIR001_13650 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D JIR001_03960 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D JIR001_09840 ysmB; putative HTH-type transcriptional regulator YsmB K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D JIR001_17630 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D JIR001_18870 hypothetical protein K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes D JIR001_26680 yfmP; HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon D JIR001_14550 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D JIR001_00240 zur; zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D JIR001_26920 perR; peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D JIR001_13570 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D JIR001_22870 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D JIR001_14830 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_14860 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_18470 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_18520 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_15970 czrA; HTH-type transcriptional repressor CzrA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D JIR001_09000 hypothetical protein K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons D JIR001_16010 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D JIR001_12980 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D JIR001_16120 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D JIR001_04060 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D JIR001_00630 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D JIR001_26820 aorR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_05550 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_05820 acoR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_31270 rocR; arginine utilization regulatory protein K06714 rocR; arginine utilization regulatory protein D JIR001_03290 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D JIR001_18620 codY_1; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D JIR001_27280 codY_2; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D JIR001_02580 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D JIR001_19010 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator D JIR001_17300 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator D JIR001_08560 manR_1; transcriptional regulator ManR K02538 manR; mannose operon transcriptional activator D JIR001_20670 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D JIR001_07720 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D JIR001_14750 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D JIR001_24350 abrB_3; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_00440 abrB_1; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_05290 abrB_2; SpoVT/AbrB family regulatory protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_00730 AbrB family transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D JIR001_31870 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_31890 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_05160 sbnI; bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI K23371 sbnI; L-serine kinase (ATP) / ParB family transcriptional regulator, heme-responsive regulator [EC:2.7.1.225] D JIR001_01470 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D JIR001_13420 glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D JIR001_13870 argR2; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D JIR001_19840 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D JIR001_22210 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D JIR001_21600 thiE_2; thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D JIR001_01380 ctsR; transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D JIR001_31010 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D JIR001_03680 phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D JIR001_28860 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D JIR001_15620 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D JIR001_20100 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D JIR001_20540 transcriptional regulator K06314 rsfA; prespore-specific regulator D JIR001_24810 hypothetical protein K06314 rsfA; prespore-specific regulator D JIR001_08690 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D JIR001_20420 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:pabs03021] D JIR001_24040 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D JIR001_02020 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D JIR001_01660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D JIR001_01670 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D JIR001_30780 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D JIR001_19790 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D JIR001_21860 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor D JIR001_24650 rpoE_2; RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D JIR001_05490 sigW_1; ECF RNA polymerase sigma factor SigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D JIR001_27460 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D JIR001_02630 sigB; RNA polymerase sigma-B factor K03090 sigB; RNA polymerase sigma-B factor D JIR001_14660 sigF; RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D JIR001_20240 RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D JIR001_20250 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D JIR001_22660 sigK; RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D JIR001_01570 RNA polymerase sporulation sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor D JIR001_05270 fliA3; RNA polymerase sigma factor SigI K03093 sigI; RNA polymerase sigma-I factor D JIR001_28870 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D JIR001_18420 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D JIR001_13750 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D JIR001_01600 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D JIR001_27250 rsbT; serine/threonine-protein kinase RsbT K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D JIR001_02600 rsbU; phosphoserine phosphatase RsbU K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D JIR001_02610 rsbV; anti-sigma-B factor antagonist K04749 rsbV; anti-sigma B factor antagonist D JIR001_02620 rsbW; serine-protein kinase RsbW K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D JIR001_23120 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D JIR001_30680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:pabs03019] D JIR001_19380 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D JIR001_18210 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D JIR001_17900 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D JIR001_28760 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D JIR001_17980 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D JIR001_18320 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D JIR001_30680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D JIR001_08370 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D JIR001_22190 dnaK_2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01040 dnaK_1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01050 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_03320 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D JIR001_17700 RNA-binding protein Hfq K03666 hfq; host factor-I protein D JIR001_12880 rraA; 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A D JIR001_28990 yvcJ; nucleotide-binding protein YvcJ K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:pabs03011] D JIR001_01980 hypothetical protein K02875 RP-L14e; large subunit ribosomal protein L14e D JIR001_15470 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D JIR001_18610 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D JIR001_01800 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D JIR001_24550 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D JIR001_01910 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D JIR001_31780 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D JIR001_01700 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D JIR001_01880 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D JIR001_02090 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D JIR001_01730 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D JIR001_02010 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D JIR001_01690 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D JIR001_02000 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D JIR001_01870 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D JIR001_18330 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D JIR001_19300 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D JIR001_01830 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D JIR001_31760 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D JIR001_01780 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D JIR001_22280 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D JIR001_22080 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21 D JIR001_01620 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D JIR001_01770 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D JIR001_01740 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D JIR001_01750 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D JIR001_01860 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D JIR001_01890 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D JIR001_31720 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D JIR001_01630 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D JIR001_01610 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D JIR001_01640 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D JIR001_02080 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D JIR001_01840 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D JIR001_01930 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D JIR001_01940 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D JIR001_01810 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D JIR001_02030 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D JIR001_01900 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D JIR001_19260 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D JIR001_08930 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D JIR001_10540 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D JIR001_01790 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D JIR001_01760 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D JIR001_01850 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D JIR001_10560 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D JIR001_19620 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D JIR001_01820 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D JIR001_01920 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D JIR001_30660 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D JIR001_19460 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D JIR001_01580 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D JIR001_32000 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D JIR001_08920 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D JIR001_00680 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D JIR001_01680 rplGB; ribosome-associated protein L7Ae-like K07590 RP-L7A; large subunit ribosomal protein L7A D JIR001_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D JIR001_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pabs03009] D JIR001_19380 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D JIR001_21960 era; GTPase Era K03595 era; GTPase D JIR001_10580 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] D JIR001_18420 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D JIR001_13750 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D JIR001_01600 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D JIR001_09480 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D JIR001_00580 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D JIR001_19740 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D JIR001_01650 ybxB; hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D JIR001_19520 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D JIR001_22160 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D JIR001_31930 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D JIR001_20410 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D JIR001_00410 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D JIR001_17720 ypiP; hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D JIR001_13840 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D JIR001_01550 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D JIR001_31690 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D JIR001_19690 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D JIR001_27600 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D JIR001_15070 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D JIR001_20120 ylyB; putative RNA pseudouridine synthase YlyB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D JIR001_04140 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D JIR001_05990 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D JIR001_02910 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D JIR001_19180 alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D JIR001_06270 hypothetical protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D JIR001_19280 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D JIR001_12530 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D JIR001_22170 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D JIR001_22770 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D JIR001_01540 rnc2; mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D JIR001_17980 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D JIR001_19660 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D JIR001_15530 der; GTPase Der K03977 engA; GTPase D JIR001_19240 ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A D JIR001_17680 hflX; GTPase HflX K03665 hflX; GTPase D JIR001_22570 ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase D JIR001_30580 ywlC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D JIR001_22980 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D JIR001_18370 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D JIR001_18430 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D JIR001_00030 hypothetical protein K14761 rlbA; ribosome-associated protein D JIR001_22530 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D JIR001_21990 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D JIR001_25400 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D JIR001_29860 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D JIR001_31790 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase D JIR001_19470 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:pabs03016] D JIR001_25770 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D JIR001_16110 cca; CCA-adding enzyme K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D JIR001_18530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D JIR001_20160 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D JIR001_22520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D JIR001_00540 metG1; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D JIR001_31470 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D JIR001_00960 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D JIR001_22900 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D JIR001_22790 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D JIR001_17400 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D JIR001_08900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D JIR001_00140 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D JIR001_01530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D JIR001_10320 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D JIR001_22910 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D JIR001_09210 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D JIR001_09220 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D JIR001_24570 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D JIR001_22290 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D JIR001_22970 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D JIR001_18830 hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D JIR001_22090 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D JIR001_24540 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D JIR001_02070 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D JIR001_18350 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D JIR001_21270 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_22860 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26330 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_30580 ywlC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D JIR001_17710 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D JIR001_31950 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D JIR001_31940 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D JIR001_31990 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D JIR001_09870 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D JIR001_04830 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D JIR001_21930 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D JIR001_21920 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D JIR001_01510 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D JIR001_00250 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D JIR001_00950 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D JIR001_17780 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D JIR001_22150 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D JIR001_18650 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D JIR001_19270 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D JIR001_29070 hypothetical protein K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D JIR001_21800 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D JIR001_07860 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D JIR001_09200 spoU; 23S rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D JIR001_26740 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D JIR001_20610 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D JIR001_07000 sufA; hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D JIR001_11070 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D JIR001_08740 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D JIR001_08760 ygcM; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D JIR001_08750 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D JIR001_21330 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D JIR001_07830 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D JIR001_11080 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D JIR001_21260 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D JIR001_00840 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D JIR001_02900 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D JIR001_02920 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D JIR001_02890 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D JIR001_28760 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D JIR001_18320 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:pabs03012] D JIR001_18390 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D JIR001_08910 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D JIR001_03240 uup; ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D JIR001_18600 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D JIR001_01720 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D JIR001_01710 fusA; elongation factor G K02355 fusA; elongation factor G D JIR001_30620 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D JIR001_18580 ribosome-recycling factor K02838 frr; ribosome recycling factor D JIR001_30610 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D JIR001_00690 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D JIR001_01990 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D JIR001_13050 efp; elongation factor P K02356 efp; elongation factor P D JIR001_29840 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:pabs03110] D JIR001_01410 clpC; negative regulator of genetic competence ClpC/MecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D JIR001_09920 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D JIR001_18630 clpY; ATP-dependent protease ATPase subunit ClpY K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D JIR001_22190 dnaK_2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01040 dnaK_1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01050 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_03320 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D JIR001_22180 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D JIR001_00880 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D JIR001_22200 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D JIR001_01030 hypothetical protein K03687 GRPE; molecular chaperone GrpE D JIR001_24470 hspA-1; molecular chaperone K13993 HSP20; HSP20 family protein D JIR001_27020 hypothetical protein K13993 HSP20; HSP20 family protein D JIR001_07750 hspA; heat-shock protein K13993 HSP20; HSP20 family protein D JIR001_09150 hypothetical protein K13993 HSP20; HSP20 family protein D JIR001_03310 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D JIR001_25580 hypothetical protein K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_31670 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D JIR001_16280 vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D JIR001_00860 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D JIR001_30470 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D JIR001_24090 hypothetical protein K01342 aprE; subtilisin [EC:3.4.21.62] D JIR001_29970 hypothetical protein K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_03610 thermitase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_09320 alkaline serine protease K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_09330 thermitase K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D JIR001_26750 hypothetical protein K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D JIR001_04310 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D JIR001_00720 hypothetical protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D JIR001_09420 trxA_1; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:pabs04131] D JIR001_15700 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D JIR001_03390 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D JIR001_28850 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D JIR001_08380 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D JIR001_01290 yxiO; putative MFS-type transporter YxiO K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:pabs03032] D JIR001_07820 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D JIR001_15600 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D JIR001_29910 hup_2; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D JIR001_00760 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D JIR001_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D JIR001_31710 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D JIR001_21870 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D JIR001_08700 replication initiation and membrane attachment protein K03346 dnaB; replication initiation and membrane attachment protein D JIR001_08710 primosomal protein DnaI K11144 dnaI; primosomal protein DnaI D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_08280 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D JIR001_18450 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D JIR001_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D JIR001_22370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D JIR001_00370 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D JIR001_00280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D JIR001_19230 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D JIR001_00070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D JIR001_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D JIR001_18660 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pabs03036] D JIR001_19380 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D JIR001_15600 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D JIR001_29910 hup_2; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D JIR001_00760 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D JIR001_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D JIR001_17700 RNA-binding protein Hfq K03666 hfq; host factor-I protein D JIR001_19340 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein D JIR001_14810 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D JIR001_14820 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D JIR001_20280 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D JIR001_00800 hypothetical protein K13052 divIC; cell division protein DivIC D JIR001_29470 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D JIR001_18170 spoIIIE; DNA translocase SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D JIR001_20400 hypothetical protein K03586 ftsL; cell division protein FtsL D JIR001_20290 hypothetical protein K03589 ftsQ; cell division protein FtsQ D JIR001_20330 spoVE_1; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D JIR001_21560 spoVE_2; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D JIR001_29460 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D JIR001_20270 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D JIR001_09230 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D JIR001_02110 cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D JIR001_04720 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D JIR001_10500 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D JIR001_23960 site-determining protein K03609 minD; septum site-determining protein MinD D JIR001_10510 minD; site-determining protein K03609 minD; septum site-determining protein MinD D JIR001_23950 hypothetical protein K03608 minE; cell division topological specificity factor D JIR001_20170 hypothetical protein K04074 divIVA; cell division initiation protein D JIR001_20200 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF D JIR001_10470 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D JIR001_10480 cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D JIR001_10490 hypothetical protein K03571 mreD; rod shape-determining protein MreD D JIR001_21550 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D JIR001_31880 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D JIR001_31870 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_31890 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_31940 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D JIR001_31930 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D JIR001_18650 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D JIR001_16400 xerC; tyrosine recombinase XerC K04763 xerD; integrase/recombinase XerD D JIR001_00750 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D JIR001_02120 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D JIR001_09960 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein D JIR001_28970 whiA; putative sporulation transcription regulator WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:pabs03400] D JIR001_07840 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D JIR001_27440 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D JIR001_27480 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D JIR001_26930 nth_2; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D JIR001_24040 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D JIR001_17470 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JIR001_23060 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JIR001_24380 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JIR001_29010 yvcI; putative Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JIR001_18290 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D JIR001_27540 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D JIR001_08640 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D JIR001_20790 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D JIR001_11330 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D JIR001_04050 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D JIR001_08630 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] D JIR001_29390 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D JIR001_29400 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D JIR001_09450 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D JIR001_15160 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_04040 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_05970 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D JIR001_01660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D JIR001_01670 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D JIR001_02020 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D JIR001_30780 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D JIR001_19790 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D JIR001_00710 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D JIR001_17740 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D JIR001_31230 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D JIR001_09300 mutSB; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D JIR001_17730 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D JIR001_13780 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D JIR001_13790 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D JIR001_08280 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D JIR001_18450 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D JIR001_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D JIR001_22370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D JIR001_00370 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D JIR001_00280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_22840 recD; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D JIR001_17960 recA; protein RecA K03553 recA; recombination protein RecA D JIR001_11040 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D JIR001_11050 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D JIR001_11030 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D JIR001_19770 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D JIR001_17930 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D JIR001_17940 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D JIR001_01430 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D JIR001_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D JIR001_19560 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D JIR001_21940 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D JIR001_00300 recR; recombination protein RecR K06187 recR; recombination protein RecR D JIR001_13880 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D JIR001_23010 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D JIR001_23020 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D JIR001_16170 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D JIR001_16200 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D JIR001_16230 DNA polymerase domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D JIR001_00070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D JIR001_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D JIR001_18660 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D JIR001_15600 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D JIR001_29910 hup_2; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D JIR001_00760 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D JIR001_20940 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D JIR001_16340 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D JIR001_17950 recX; regulatory protein RecX K03565 recX; regulatory protein D JIR001_12820 transcriptional regulator K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25090 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JIR001_25080 nrdF; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D JIR001_18360 phosphoesterase RecJ-like protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:pabs03029] D JIR001_18390 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D JIR001_08910 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D JIR001_18600 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D JIR001_01720 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D JIR001_01710 fusA; elongation factor G K02355 fusA; elongation factor G D JIR001_21960 era; GTPase Era K03595 era; GTPase D JIR001_24570 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D JIR001_22520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D JIR001_22900 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D JIR001_31470 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D JIR001_19100 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D JIR001_27680 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D JIR001_27670 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D JIR001_27690 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D JIR001_31770 ssbA; single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D JIR001_22190 dnaK_2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01040 dnaK_1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01050 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_22200 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D JIR001_01030 hypothetical protein K03687 GRPE; molecular chaperone GrpE D JIR001_03320 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D JIR001_03310 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D JIR001_22180 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D JIR001_21270 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_22860 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26330 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_02120 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D JIR001_25210 hypothetical protein K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_27240 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D JIR001_14760 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_25200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D JIR001_31970 misCA; membrane protein insertase MisCA K03217 yidC; YidC/Oxa1 family membrane protein insertase D JIR001_10380 cysteine ABC transporter ATP-binding protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pabs02000] D JIR001_27260 ygaD; putative multidrug export ATP-binding/permease protein YgaD K24708 K24708; ATP-binding cassette, subfamily B, putative efflux pump [EC:7.6.2.-] D JIR001_11630 multidrug ABC transporter permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D JIR001_11640 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D JIR001_25420 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D JIR001_25410 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D JIR001_05510 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D JIR001_05520 yvgM; putative molybdenum transport system permease protein YvgM K02018 modB; molybdate transport system permease protein D JIR001_27990 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D JIR001_27970 sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein D JIR001_27960 ssuB1; aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D JIR001_13090 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D JIR001_13110 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D JIR001_13100 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D JIR001_12290 ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein D JIR001_12270 hypothetical protein K11070 potC; spermidine/putrescine transport system permease protein D JIR001_12280 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D JIR001_12260 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D JIR001_26720 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D JIR001_28470 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D JIR001_28490 hypothetical protein K05846 opuBD; osmoprotectant transport system permease protein D JIR001_28480 glycine/betaine ABC transporter ATPase K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D JIR001_29580 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D JIR001_10060 ytlA; putative binding protein YtlA K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D JIR001_29600 nitrate ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D JIR001_10030 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D JIR001_29610 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D JIR001_10050 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D JIR001_29280 msmX; ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D JIR001_17500 ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D JIR001_17490 sugar ABC transporter permease K17316 gtsB; glucose/mannose transport system permease protein D JIR001_17480 ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein D JIR001_24500 putative ABC transporter-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D JIR001_24490 hypothetical protein K10237 thuF; trehalose/maltose transport system permease protein D JIR001_24480 ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D JIR001_23200 sugar ABC transporter substrate-binding protein K17244 chiE; putative chitobiose transport system substrate-binding protein D JIR001_23210 lactose ABC transporter permease K17245 chiF; putative chitobiose transport system permease protein D JIR001_23220 lactose ABC transporter permease K17246 chiG; putative chitobiose transport system permease protein D JIR001_18160 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D JIR001_18140 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D JIR001_18130 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D JIR001_18150 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D JIR001_02140 yjkA; UPF0014 membrane protein YjkA K02069 STAR2; UDP-glucose/iron transport system permease protein D JIR001_02130 ABC transporter ATP-binding protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D JIR001_11390 hypothetical protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D JIR001_23350 hypothetical protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D JIR001_31360 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D JIR001_11350 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D JIR001_31350 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D JIR001_11380 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D JIR001_31340 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D JIR001_08500 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D JIR001_08510 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D JIR001_08520 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D JIR001_08530 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D JIR001_08540 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D JIR001_29900 basic amino acid ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D JIR001_29890 glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein D JIR001_29880 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_27780 glnH; ABC transporter glutamine-binding protein GlnH K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D JIR001_27760 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D JIR001_27770 glnM; putative glutamine ABC transporter permease protein GlnM K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D JIR001_27790 glnQ; glutamine transport ATP-binding protein GlnQ K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_11820 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D JIR001_11830 yckA; putative amino-acid ABC transporter permease protein YckA K10009 tcyB; L-cystine transport system permease protein D JIR001_11840 arginine ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D JIR001_23740 ABC transporter ATP-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D JIR001_23730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D JIR001_23720 amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D JIR001_23710 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D JIR001_23700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D JIR001_30010 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D JIR001_30020 ABC transporter permease K02072 metI; D-methionine transport system permease protein D JIR001_30030 metN3; methionine import ATP-binding protein MetN 3 K02071 metN; D-methionine transport system ATP-binding protein D JIR001_28660 ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D JIR001_28640 ectoine/hydroxyectoine ABC transporter permease subunit EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein D JIR001_28650 ectoine/hydroxyectoine ABC transporter permease subunit EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein D JIR001_28630 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D JIR001_07740 oppA_3; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_19090 oppA_4; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_31460 oppA_5; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06790 oppA_1; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_06800 oppA_2; peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09500 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D JIR001_09510 oppB_2; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein D JIR001_06810 oppB_1; peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D JIR001_06820 oppC; diguanylate cyclase K15582 oppC; oligopeptide transport system permease protein D JIR001_09520 dppC; dipeptide transport system permease protein DppC K15582 oppC; oligopeptide transport system permease protein D JIR001_06830 oppD_1; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_09530 oppD_2; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein D JIR001_06840 oppF; ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D JIR001_21480 dppE; dipeptide-binding protein DppE K16199 dppE; dipeptide transport system substrate-binding protein D JIR001_28400 iron citrate ABC transporter substrate-binding protein K23181 fecB; ferric citrate transport system substrate-binding protein D JIR001_05080 yfmC; Fe(3+)-citrate-binding protein YfmC K23181 fecB; ferric citrate transport system substrate-binding protein D JIR001_05060 yfmE; Fe(3+)-citrate import system permease protein YfmE K23182 fecD; ferric citrate transport system permease protein D JIR001_07120 cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D JIR001_05070 fhuB; ferrichrome ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D JIR001_11440 hypothetical protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D JIR001_17610 fhuC; iron-dicitrate ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D JIR001_04220 yvrC; putative ABC transporter substrate-binding lipoprotein YvrC K25034 btuF; cobalamin transport system substrate-binding protein D JIR001_04230 corrinoid ABC transporter permease K25027 btuC; cobalamin transport system permease protein D JIR001_04240 ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D JIR001_00210 adhesin K09815 znuA; zinc transport system substrate-binding protein D JIR001_00230 znuB; zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D JIR001_00220 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D JIR001_25550 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D JIR001_02060 ecfT; energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D JIR001_02040 ecfA_1; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D JIR001_02050 ecfA_2; energy-coupling factor transporter ATP-binding protein EcfA K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D JIR001_11530 ABC transporter permease K25147 berB; beta-exotoxin I transport system permease protein D JIR001_11520 ABC transporter ATP-binding protein K25148 berA; beta-exotoxin I transport system ATP-binding protein D JIR001_29460 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D JIR001_29470 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D JIR001_27060 ABC transporter permease K25154 evrC; viologen exporter family transport system permease protein D JIR001_27070 daunorubicin ABC transporter permease K25155 evrB; viologen exporter family transport system permease protein D JIR001_27080 ABC transporter ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein D JIR001_25620 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_29620 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_29790 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_01340 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_02420 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_10720 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D JIR001_25600 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_25610 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_29630 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_29780 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_01350 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_02400 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_04990 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_10730 bacitracin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D JIR001_05630 sufC; vegetative protein 296 K09013 sufC; Fe-S cluster assembly ATP-binding protein D JIR001_26200 sodium:solute symporter K14387 SLC5A7; solute carrier family 5 (high affinity choline transporter), member 7 D JIR001_07730 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D JIR001_11020 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D JIR001_12930 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D JIR001_06120 MFS transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein D JIR001_07440 ywbF; putative transporter YwbF K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D JIR001_01320 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D JIR001_07320 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D JIR001_23990 MFS transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D JIR001_05120 sbnD; staphyloferrin B export MFS transporter K23361 sbnD; MFS transporter, DHA1 family, staphyloferrin B biosynthesis exporter D JIR001_13230 yitG; putative MFS-type transporter YitG K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D JIR001_26670 chloramphenicol resistance protein K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D JIR001_11500 yfnC; putative MFS-type transporter YfnC K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D JIR001_16960 yybF; putative MFS-type transporter YybF K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D JIR001_01290 yxiO; putative MFS-type transporter YxiO K06902 UMF1; MFS transporter, UMF1 family D JIR001_23410 MFS transporter K08222 yqgE; MFS transporter, YQGE family, putative transporter D JIR001_28280 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D JIR001_28270 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D JIR001_19000 ptsG; PTS system glucose-specific EIICBA component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D JIR001_00420 PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D JIR001_31550 ybbF; putative PTS system EIIBC component YbbF K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D JIR001_29370 treP; PTS system trehalose-specific EIIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D JIR001_04510 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_08570 hypothetical protein K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D JIR001_04500 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D JIR001_17290 mtlF; mannitol-specific phosphotransferase enzyme IIA component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D JIR001_17310 mtlA; PTS system mannitol-specific EIICB component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D JIR001_28260 PTS beta-glucoside transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D JIR001_28250 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03380 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D JIR001_03370 celB; permease IIC component K02761 celB; cellobiose PTS system EIIC component D JIR001_11120 pts35A; PTS galactitol transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D JIR001_11130 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D JIR001_11140 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D JIR001_08580 PTS fructose transporter subunit IIBC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D JIR001_26120 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D JIR001_26110 ulaA; PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D JIR001_17350 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D JIR001_18510 aquaporin K09874 NIP; aquaporin NIP D JIR001_13390 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D JIR001_17360 ammonium transporter K03320 amt; ammonium transporter, Amt family D JIR001_03250 ammonium transporter K03320 amt; ammonium transporter, Amt family D JIR001_24880 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D JIR001_01130 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D JIR001_01210 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D JIR001_04840 large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D JIR001_27520 mechanosensitive ion channel protein MscS K22044 ybiO; moderate conductance mechanosensitive channel D JIR001_15940 mgtE; magnesium transporter MgtE K06213 mgtE; magnesium transporter D JIR001_07620 yfjQ; putative metal ion transporter YfjQ K03284 corA; magnesium transporter D JIR001_27040 crcB2_1; putative fluoride ion transporter CrcB 2 K06199 crcB; fluoride exporter D JIR001_27050 crcB2_2; putative fluoride ion transporter CrcB 2 K06199 crcB; fluoride exporter D JIR001_24080 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D JIR001_27170 hypothetical protein K06518 cidA; holin-like protein D JIR001_31390 CidA/LrgA family protein K06518 cidA; holin-like protein D JIR001_02520 lysine-specific permease K11733 lysP; lysine-specific permease D JIR001_04460 lysine-specific permease K11733 lysP; lysine-specific permease D JIR001_12160 gabP; GABA permease K11735 gabP; GABA permease D JIR001_05860 amino acid permease K02205 rocE; arginine/ornithine permease D JIR001_12390 amino acid permease-associated protein K14052 puuP; putrescine importer D JIR001_26660 arginine-ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D JIR001_03630 hypothetical protein K06296 gerKB; spore germination protein KB D JIR001_19710 gerAB; spore germination protein A2 K06311 yndE; spore germination protein D JIR001_12460 amino acid permease K16263 yjeH; amino acid efflux transporter D JIR001_15960 czcD_2; cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D JIR001_24960 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D JIR001_20020 metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D JIR001_30560 hypothetical protein K07238 TC.ZIP; zinc transporter, ZIP family D JIR001_22650 hypothetical protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D JIR001_24670 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D JIR001_28020 membrane protein K03298 TC.DME; drug/metabolite transporter, DME family D JIR001_16360 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D JIR001_29320 permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D JIR001_13180 lutP; L-lactate permease K03303 lutP; lactate permease D JIR001_25450 L-lactate permease K03303 lutP; lactate permease D JIR001_24250 chaA; Ca(2+)/H(+) antiporter ChaA K07300 chaA; Ca2+:H+ antiporter D JIR001_12060 ywcA; putative symporter YwcA K14393 actP; cation/acetate symporter D JIR001_17640 proton glutamate symport protein K11102 gltP; proton glutamate symport protein D JIR001_03130 dctA; C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D JIR001_03110 hypothetical protein K03315 nhaC; Na+:H+ antiporter, NhaC family D JIR001_27800 sodium:proton antiporter K11105 cvrA; potassium/hydrogen antiporter D JIR001_26730 K+ transporter Trk K03498 trkH; trk/ktr system potassium uptake protein D JIR001_09190 potassium transporter Trk K03499 trkA; trk/ktr system potassium uptake protein D JIR001_20090 uracil transporter K02824 uraA; uracil permease D JIR001_15950 permease K06901 pbuG; adenine/guanine/hypoxanthine permease D JIR001_07420 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease D JIR001_09360 xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease D JIR001_04860 ywrB; putative transporter YwrB K07240 chrA; chromate transporter D JIR001_04870 ywrA; putative transporter YwrA K07240 chrA; chromate transporter D JIR001_02950 nickel/cobalt efflux system K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D JIR001_25780 mntH; divalent metal cation transporter MntH K03322 mntH; manganese transport protein D JIR001_13480 dehydroascorbate transporter K21393 yiaN; TRAP-type transport system large permease protein D JIR001_13470 ABC transporter permease K21394 yiaM; TRAP-type transport system small permease protein D JIR001_13460 hypothetical protein K21395 yiaO; TRAP-type transport system periplasmic protein D JIR001_13500 ABC transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein D JIR001_22110 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter D JIR001_11280 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D JIR001_22680 membrane protein K24180 mleP; malate permease and related proteins D JIR001_19900 hypothetical protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D JIR001_12080 lysine transporter LysE K05835 rhtC; threonine efflux protein D JIR001_16000 autotransporter K26605 azlC; branched chain amino acid efflux pump D JIR001_15990 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D JIR001_05590 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D JIR001_05580 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D JIR001_05570 tricarboxylic transport TctC K07795 tctC; putative tricarboxylic transport membrane protein D JIR001_19640 thiT; thiamine transporter ThiT K16789 thiT; thiamine transporter D JIR001_20330 spoVE_1; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D JIR001_21560 spoVE_2; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D JIR001_03390 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D JIR001_30570 mntP; putative manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein D JIR001_00470 hypothetical protein K07243 FTR; high-affinity iron transporter D JIR001_14350 hypothetical protein K03641 tolB; TolB protein D JIR001_12610 mdcA; malonate decarboxylase subunit alpha K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D JIR001_12630 mdcD; malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit D JIR001_14200 cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D JIR001_20640 cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D JIR001_01370 magnesium transporter MgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D JIR001_28950 hypothetical protein K24951 yknW; membrane protein, antimicrobial resistance system D JIR001_18780 hypothetical protein K07245 pcoD; copper resistance protein D D JIR001_18790 hypothetical protein K07156 copC; copper resistance protein C C 02044 Secretion system [BR:pabs02044] D JIR001_21200 hypothetical protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D JIR001_21190 MSHA biogenesis protein MshG K02455 gspF; general secretion pathway protein F D JIR001_21170 hypothetical protein K02457 gspH; general secretion pathway protein H D JIR001_10410 twitching motility protein PilT K02669 pilT; twitching motility protein PilT D JIR001_01080 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D JIR001_01090 type II/IV secretion system-related protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D JIR001_01100 hypothetical protein K12510 tadB; tight adherence protein B D JIR001_01110 hypothetical protein K12511 tadC; tight adherence protein C D JIR001_20190 membrane protein K02221 yggT; YggT family protein D JIR001_22490 hypothetical protein K02237 comEA; competence protein ComEA D JIR001_22400 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D JIR001_22500 proC_1; pyrroline-5-carboxylate reductase K02239 comER; competence protein ComER D JIR001_29930 DEAD/DEAH box helicase K02240 comFA; competence protein ComFA D JIR001_29920 hypothetical protein K02242 comFC; competence protein ComFC D JIR001_21180 comGC; ComG operon protein 3 K02245 comGC; competence protein ComGC D JIR001_29850 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D JIR001_11300 hypothetical protein K03072 secD; preprotein translocase subunit SecD D JIR001_01590 hypothetical protein K03073 secE; preprotein translocase subunit SecE D JIR001_11310 hypothetical protein K03074 secF; preprotein translocase subunit SecF D JIR001_28800 secG; putative protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D JIR001_01950 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D JIR001_19310 ftsY_1; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D JIR001_19330 ftsY_2; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D JIR001_11090 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D JIR001_31970 misCA; membrane protein insertase MisCA K03217 yidC; YidC/Oxa1 family membrane protein insertase D JIR001_22700 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D JIR001_27740 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA D JIR001_03300 tatC2; Sec-independent protein translocase protein TatCy K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:pabs02042] D JIR001_24080 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:pabs02022] D JIR001_08490 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D JIR001_08480 phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D JIR001_15110 resE; sensor histidine kinase ResE K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D JIR001_15100 resD; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D JIR001_31610 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D JIR001_31600 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D JIR001_26980 hpk5; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D JIR001_26990 rrp5; DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D JIR001_24740 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D JIR001_29950 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D JIR001_07450 hypothetical protein K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D JIR001_30750 spo0F; sporulation initiation phosphotransferase F K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D JIR001_13910 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D JIR001_03150 hypothetical protein K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3] D JIR001_03140 malR_1; transcriptional regulatory protein MalR K11615 malR; two-component system, CitB family, response regulator MalR D JIR001_01310 hypothetical protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:pabs02035] D JIR001_11820 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D JIR001_10410 twitching motility protein PilT K02669 pilT; twitching motility protein PilT D JIR001_01080 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D JIR001_01090 type II/IV secretion system-related protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pabs04812] D JIR001_10470 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D JIR001_21400 hypothetical protein K18640 parM; plasmid segregation protein ParM D JIR001_31900 hypothetical protein K18640 parM; plasmid segregation protein ParM D JIR001_20270 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D JIR001_20280 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D JIR001_10500 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D JIR001_23960 site-determining protein K03609 minD; septum site-determining protein MinD D JIR001_10510 minD; site-determining protein K03609 minD; septum site-determining protein MinD D JIR001_23950 hypothetical protein K03608 minE; cell division topological specificity factor D JIR001_31880 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D JIR001_31870 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_31890 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:pabs04147] D JIR001_28810 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D JIR001_28850 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D JIR001_28840 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D JIR001_08380 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D JIR001_17870 diguanylate cyclase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D JIR001_04330 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D JIR001_03320 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D JIR001_22190 dnaK_2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01040 dnaK_1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_01050 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D JIR001_19890 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D JIR001_00100 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D JIR001_01720 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D JIR001_18830 hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D JIR001_22090 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D JIR001_25460 ldh1; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D JIR001_16880 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_23610 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_26850 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_02390 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_09370 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D JIR001_30850 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D JIR001_09640 hypothetical protein K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D JIR001_20430 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D JIR001_01960 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D JIR001_11340 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D JIR001_13120 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_29480 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D JIR001_29490 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D JIR001_31160 mdeA; methionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D JIR001_19870 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D JIR001_13400 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D JIR001_17620 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_31100 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D JIR001_10120 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D JIR001_21830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D JIR001_21250 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D JIR001_13490 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_15130 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D JIR001_03560 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D JIR001_14040 bfmBC; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_04620 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D JIR001_12100 electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D JIR001_09410 etfA; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D JIR001_28930 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D JIR001_28830 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:pabs02048] D JIR001_02590 mRNA interferase K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D JIR001_02580 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D JIR001_14400 AbrB family transcriptional regulator K19156 prlF; antitoxin PrlF D JIR001_20270 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D JIR001_10470 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D JIR001_21270 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_22860 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D JIR001_26330 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:pabs04090] D JIR001_09640 hypothetical protein K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:pabs01504] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pabs00537] D JIR001_17870 diguanylate cyclase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pabs03100] D JIR001_t00550 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D JIR001_t00020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00480 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00570 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00360 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D JIR001_t00090 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D JIR001_t00170 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D JIR001_t00210 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D JIR001_t00440 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D JIR001_t00400 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D JIR001_t00500 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D JIR001_t00140 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00230 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D JIR001_t00110 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D JIR001_t00190 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D JIR001_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00340 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D JIR001_t00220 tRNA-His K14226 tRNA-His; tRNA His D JIR001_t00070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D JIR001_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D JIR001_t00350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00490 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00260 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D JIR001_t00150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D JIR001_t00240 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D JIR001_t00040 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00450 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00050 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00430 tRNA-Met K14230 tRNA-Met; tRNA Met D JIR001_t00330 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D JIR001_t00530 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D JIR001_t00410 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00270 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00320 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D JIR001_t00540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D JIR001_t00010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D JIR001_t00520 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00100 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00560 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D JIR001_t00390 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D JIR001_t00510 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D JIR001_t00200 tRNA-Val K14237 tRNA-Val; tRNA Val D JIR001_t00120 tRNA-Val K14237 tRNA-Val; tRNA Val D JIR001_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D JIR001_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D JIR001_12400 hypothetical protein K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219] D JIR001_16610 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D JIR001_12480 bdhA; NADH-dependent alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D JIR001_15220 carbon monoxide dehydrogenase K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D JIR001_15210 carbon monoxide dehydrogenase K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D JIR001_15230 carbon-monoxide dehydrogenase large subunit K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D JIR001_30830 mmgC; acyl-CoA dehydrogenase K18244 mmgC; acyl-CoA dehydrogenase [EC:1.3.99.-] D JIR001_12110 protein FixC K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D JIR001_19030 yfmJ; putative NADP-dependent oxidoreductase YfmJ K00359 qorA; NADPH:quinone reductase [EC:1.6.5.5] D JIR001_24950 oxidoreductase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D JIR001_25850 azoR2; FMN-dependent NADH-azoreductase 2 K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D JIR001_15400 hypothetical protein K26960 bdr; bacillithiol disulfide reductase [EC:1.8.1.-] D JIR001_26960 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D JIR001_04820 tpx; putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D JIR001_13660 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D JIR001_15740 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D JIR001_15040 asnO_1; L-asparagine oxygenase K18058 asnO; L-asparagine oxygenase [EC:1.14.11.39] D JIR001_25320 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D JIR001_04420 hypothetical protein K22342 dmmA; dimethylamine monooxygenase subunit A [EC:1.14.13.238] D JIR001_04450 yeaX; ferredoxin--NADP(+) reductase K22343 dmmB; dimethylamine monooxygenase subunit B [EC:1.14.13.238] D JIR001_04440 hypothetical protein K22344 dmmC; dimethylamine monooxygenase subunit C [EC:1.14.13.238] D JIR001_03830 ferredoxin--NADP reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D JIR001_07060 ferredoxin--NADP reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D JIR001_14850 arsC_1; protein ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D JIR001_18500 arsC_2; protein ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D JIR001_04270 hypothetical protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D JIR001_12660 malonyl CoA-acyl carrier protein transacylase K13935 mdcH; malonate decarboxylase epsilon subunit [EC:2.3.1.39] D JIR001_05030 acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D JIR001_12420 hypothetical protein K24117 scmL; S-(2-succino)cysteine N-acetyltransferase [EC:2.3.1.-] D JIR001_26370 hemolysin K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D JIR001_04780 hemolysin K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D JIR001_09260 glycosidase K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D JIR001_16100 glycosyl transferase K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D JIR001_12620 mdcB; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D JIR001_06140 hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D JIR001_09810 hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D JIR001_06490 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxyl ate carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D JIR001_29250 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D JIR001_16620 hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D JIR001_19600 kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18] D JIR001_21890 yqfL; putative pyruvate, phosphate dikinase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D JIR001_12650 mdcG; malonate decarboxylase holo-ACP synthase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D JIR001_01440 disA; DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85] D JIR001_02240 cdaA; cyclic di-AMP synthase CdaA K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D JIR001_30890 phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D JIR001_14650 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D JIR001_29270 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D JIR001_01400 mcsB; protein-arginine kinase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D JIR001_28770 est; carboxylesterase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D JIR001_07590 thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D JIR001_23670 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D JIR001_03670 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D JIR001_03820 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D JIR001_08390 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D JIR001_00830 stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D JIR001_21010 PHP-like protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D JIR001_22580 hypothetical protein K07015 yqeG; putative phosphatase [EC:3.1.3.-] D JIR001_31730 DHH family phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D JIR001_22000 pgpH; cyclic-di-AMP phosphodiesterase PgpH K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D JIR001_00560 tatD; hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D JIR001_02710 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D JIR001_00570 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D JIR001_19760 def2; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D JIR001_10710 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D JIR001_10800 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D JIR001_16090 ypjG; bacillithiol biosynthesis deacetylase BshB1 K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D JIR001_15380 PIG-L domain-containing protein K22135 bshB2; N-acetylglucosamine malate deacetylase 2 [EC:3.5.1.-] D JIR001_00640 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D JIR001_30550 protein-tyrosine-phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D JIR001_12640 biotin-independent malonate decarboxylase subunit beta K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D JIR001_02440 nnr; bifunctional NAD(P)H-hydrate repair enzyme Nnr K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D JIR001_24940 sqhC; squalene--hopene cyclase K18115 sqhC; sporulenol synthase [EC:4.2.1.137] D JIR001_06000 serine/threonine dehydratase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D JIR001_06500 7-cyano-7-deazaguanine synthase K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D JIR001_06480 hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D JIR001_30790 mcm; Fused isobutyryl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D JIR001_06900 capB; PGA synthase CapB K01932 capB; gamma-polyglutamate synthase [EC:6.3.2.-] D JIR001_18940 hypothetical protein K27344 ldmS; L-aspartate-L-methionine ligase [EC:6.3.2.-] D JIR001_05800 acetone carboxylase subunit alpha K10854 acxB; acetone carboxylase, alpha subunit [EC:6.4.1.6] D JIR001_05790 acetone carboxylase subunit beta K10855 acxA; acetone carboxylase, beta subunit [EC:6.4.1.6] D JIR001_05810 acetone carboxylase subunit gamma K10856 acxC; acetone carboxylase, gamma subunit [EC:6.4.1.6] D JIR001_19920 yloB; calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D JIR001_02680 hypothetical protein K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D JIR001_05390 cadmium transporter K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D JIR001_28960 crh; HPr-like protein Crh K11184 chr; catabolite repression HPr-like protein D JIR001_26590 lutA; lactate utilization protein A K18928 lldE; L-lactate dehydrogenase complex protein LldE D JIR001_26600 lutB; lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF D JIR001_26610 lutC; lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG D JIR001_20440 bshC; putative cysteine ligase BshC K22136 bshC; bacillithiol synthase C 99982 Energy metabolism D JIR001_29550 alcohol dehydrogenase K13955 yogA; zinc-binding alcohol dehydrogenase/oxidoreductase D JIR001_19960 fdhD_2; sulfurtransferase FdhD K02379 fdhD; FdhD protein D JIR001_09730 fdhD_1; sulfurtransferase FdhD K02379 fdhD; FdhD protein D JIR001_15340 ferredoxin K05337 fer; ferredoxin D JIR001_05660 iron-sulfur cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D JIR001_12090 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D JIR001_09400 etfB; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D JIR001_12120 ferredoxin K03855 fixX; ferredoxin like protein C 99983 Lipid metabolism D JIR001_19590 fatty acid-binding protein DegV K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D JIR001_20210 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D JIR001_25730 cell wall hydrolase K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D JIR001_11400 mobB; molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others D JIR001_11360 hypothetical protein K15977 K15977; putative oxidoreductase D JIR001_15720 oxidoreductase K15977 K15977; putative oxidoreductase D JIR001_05040 yqiW; UPF0403 protein YqiW K26958 brxA_B; bacilliredoxin D JIR001_24660 ytxJ; hypothetical protein K26959 brxC; monothiol bacilliredoxin B B 09192 Unclassified: genetic information processing C 99973 Transcription D JIR001_29830 cspB; cold shock protein CspB K03704 cspA; cold shock protein D JIR001_29870 cold-shock protein K03704 cspA; cold shock protein D JIR001_02640 RNA-binding transcriptional accessory protein K06959 tex; protein Tex D JIR001_19810 UPF0296 protein K09777 remA; extracellular matrix regulatory protein A D JIR001_00050 hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D JIR001_04530 general stress protein K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D JIR001_01390 mcsA; protein-arginine kinase activator protein K19411 mcsA; protein arginine kinase activator D JIR001_09900 tig; trigger factor K03545 tig; trigger factor D JIR001_10350 hypothetical protein K03190 ureD; urease accessory protein D JIR001_28750 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D JIR001_06440 nrdH; NrdH-redoxin K06191 nrdH; glutaredoxin-like protein NrdH D JIR001_19200 comM; ATP-dependent protease K07391 comM; magnesium chelatase family protein D JIR001_02210 osmotically inducible protein C K07397 yhfA; putative redox protein D JIR001_15080 resB; cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein D JIR001_15240 xanthine and Co dehydrogenase maturation factor K07402 xdhC; xanthine dehydrogenase accessory factor D JIR001_15290 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor D JIR001_15370 mecA; adapter protein MecA K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D JIR001_10460 UPF0758 protein K03630 radC; DNA repair protein RadC D JIR001_20820 nth_1; endonuclease III K07457 K07457; endonuclease III related protein D JIR001_19220 UPF0102 protein K07460 yraN; putative endonuclease D JIR001_00400 hypothetical protein K07461 K07461; putative endonuclease D JIR001_18670 DNA processing protein DprA K04096 smf; DNA processing protein D JIR001_17390 dnaD; DNA replication protein DnaD K02086 dnaD; DNA replication protein D JIR001_22880 ATPase AAA K07478 ycaJ; putative ATPase D JIR001_24310 hypothetical protein K07496 K07496; putative transposase D JIR001_24320 hypothetical protein K07496 K07496; putative transposase D JIR001_26250 transposase K07496 K07496; putative transposase D JIR001_28560 hypothetical protein K07496 K07496; putative transposase D JIR001_04710 tlpB; transposase K07496 K07496; putative transposase D JIR001_10860 transposase K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others D JIR001_00290 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D JIR001_26140 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D JIR001_03200 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D JIR001_19830 yhdG_2; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D JIR001_25520 amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D JIR001_28140 yhdG_3; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D JIR001_28150 yhdG_4; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D JIR001_06760 yhdG_1; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D JIR001_29200 multidrug transporter AcrB K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D JIR001_19020 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D JIR001_26640 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D JIR001_26280 sodium:solute symport protein K03307 TC.SSS; solute:Na+ symporter, SSS family D JIR001_03410 hypothetical protein K03307 TC.SSS; solute:Na+ symporter, SSS family D JIR001_12170 cytosine permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D JIR001_10590 yutK; putative transporter YutK K03317 TC.CNT; concentrative nucleoside transporter, CNT family D JIR001_00740 yabM; putative membrane protein YabM K03328 TC.PST; polysaccharide transporter, PST family C 99978 Cell growth D JIR001_00320 bofA; sigma-K factor-processing regulatory protein BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D JIR001_17760 cotE; spore coat protein E K06328 cotE; spore coat protein E D JIR001_23870 hypothetical protein K06332 cotJA; spore coat protein JA D JIR001_23880 spore coat protein CotJB K06333 cotJB; spore coat protein JB D JIR001_23890 cotJC; protein CotJC K06334 cotJC; spore coat protein JC D JIR001_10170 ytcC; putative glycosyltransferase YtcC K06338 cotSA; spore coat protein SA D JIR001_31960 DNA-binding protein K06346 jag; spoIIIJ-associated protein D JIR001_02180 KinB-signaling pathway activation protein K06349 kbaA; KinB signaling pathway activation protein D JIR001_03190 kipA; KipI antagonist K06350 kipA; antagonist of KipI D JIR001_03170 kipI; kinase A inhibitor K06351 kipI; inhibitor of KinA D JIR001_14910 nucleoside recognition protein K06373 spmA; spore maturation protein A D JIR001_14920 spmB; spore maturation protein B K06374 spmB; spore maturation protein B D JIR001_27100 spo0M_1; sporulation-control protein K06377 spo0M; sporulation-control protein D JIR001_27110 spo0M_2; sporulation-control protein spo0M K06377 spo0M; sporulation-control protein D JIR001_28120 sporulation-control protein K06377 spo0M; sporulation-control protein D JIR001_28130 spo0M_3; sporulation-control protein spo0M K06377 spo0M; sporulation-control protein D JIR001_04550 hypothetical protein K06377 spo0M; sporulation-control protein D JIR001_14640 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D JIR001_10440 hypothetical protein K06380 spoIIB; stage II sporulation protein B D JIR001_14540 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D JIR001_02200 hypothetical protein K06384 spoIIM; stage II sporulation protein M D JIR001_16460 spoIIP_1; stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D JIR001_22260 spoIIP_2; stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D JIR001_30230 hypothetical protein K06386 spoIIQ; stage II sporulation protein Q D JIR001_30600 spoIIR; stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D JIR001_13250 spoIIIAA; stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D JIR001_13260 spoIIIAB; stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D JIR001_13270 spoIIIAC; stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D JIR001_13280 spoIIIAD; stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D JIR001_13290 spoIIIAE; stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D JIR001_13300 hypothetical protein K06395 spoIIIAF; stage III sporulation protein AF D JIR001_13310 spoIIIAG; stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D JIR001_13320 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH D JIR001_15590 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D JIR001_10520 hypothetical protein K06401 spoIVFA; stage IV sporulation protein FA D JIR001_14670 spoVAA; stage V sporulation protein AA K06403 spoVAA; stage V sporulation protein AA D JIR001_14680 spoVAB; stage V sporulation protein AB K06404 spoVAB; stage V sporulation protein AB D JIR001_24140 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D JIR001_08800 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D JIR001_24130 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D JIR001_08810 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D JIR001_14690 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D JIR001_14700 spoVAEA; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D JIR001_08820 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D JIR001_18260 dipicolinate synthase subunit A K06410 spoVFA; dipicolinate synthase subunit A D JIR001_18250 dapB_2; dipicolinate synthase subunit B K06411 spoVFB; dipicolinate synthase subunit B D JIR001_00650 spoVG; putative septation protein SpoVG K06412 spoVG; stage V sporulation protein G D JIR001_17690 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K D JIR001_07940 spoVR; stage V sporulation protein R K06415 spoVR; stage V sporulation protein R D JIR001_17880 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D JIR001_10290 hypothetical protein K06417 spoVID; stage VI sporulation protein D D JIR001_23840 small acid-soluble spore protein K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D JIR001_09660 sasP-1; small, acid-soluble spore protein 1 K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D JIR001_22040 sspB; small, acid-soluble spore protein B K06419 SASP-B; small acid-soluble spore protein B (major beta-type SASP) D JIR001_25840 hypothetical protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D JIR001_12890 hypothetical protein K06422 sspE; small acid-soluble spore protein E (minor gamma-type SASP) D JIR001_23450 hypothetical protein K06422 sspE; small acid-soluble spore protein E (minor gamma-type SASP) D JIR001_00610 sspF; protein SspF K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D JIR001_07460 sspH; small, acid-soluble spore protein H K06425 sspH; small acid-soluble spore protein H (minor) D JIR001_09180 sspI; small, acid-soluble spore protein I K06426 sspI; small acid-soluble spore protein I (minor) D JIR001_22020 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D JIR001_02170 germination protein GerD K06294 gerD; spore germination protein D D JIR001_17270 germination protein KA K06295 gerKA; spore germination protein KA D JIR001_19700 hypothetical protein K06297 gerKC; spore germination protein KC D JIR001_03640 grkc; germination protein K06297 gerKC; spore germination protein KC D JIR001_09860 sporulation protein K06298 gerM; germination protein M D JIR001_27030 hypothetical protein K06301 gerPC; spore germination protein PC D JIR001_25720 hypothetical protein K06305 gerQ; spore germination protein Q D JIR001_19720 spore germination protein K06310 yndD; spore germination protein D JIR001_15430 germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D JIR001_27700 carbon starvation protein A K06200 cstA; carbon starvation protein D JIR001_11600 GTP-binding protein K06207 typA; GTP-binding protein D JIR001_22010 phoH; phosphate starvation protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D JIR001_07900 prkA; serine protein kinase K07180 prkA; serine protein kinase C 99992 Structural proteins D JIR001_07380 glycoside hydrolase family 25 K07273 acm; lysozyme D JIR001_06920 capA; PGA biosynthesis protein CapA K07282 capA; gamma-polyglutamate biosynthesis protein CapA D JIR001_06910 capC; PGA biosynthesis protein CapC K22116 capC; gamma-polyglutamate biosynthesis protein CapC D JIR001_10080 hemX; protein HemX K02497 hemX; HemX protein D JIR001_18050 transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D JIR001_08550 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D JIR001_02830 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D JIR001_08990 hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D JIR001_12710 yprA; putative ATP-dependent helicase YprA K06877 K06877; DEAD/DEAH box helicase domain-containing protein D JIR001_19350 csaA; tRNA-binding protein K06878 K06878; tRNA-binding protein D JIR001_23050 hypothetical protein K06886 glbN; hemoglobin D JIR001_27140 hypothetical protein K06886 glbN; hemoglobin D JIR001_04790 group 1 truncated hemoglobin K06886 glbN; hemoglobin D JIR001_12990 phospholipase K07001 K07001; NTE family protein D JIR001_19490 esterase K07001 K07001; NTE family protein D JIR001_10280 esterase K07001 K07001; NTE family protein D JIR001_04690 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein D JIR001_05670 sufB; FeS cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D JIR001_05640 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D JIR001_26350 yfhP; hypothetical protein K07038 K07038; inner membrane protein D JIR001_08870 metal-dependent hydrolase K07038 K07038; inner membrane protein D JIR001_23630 phosphotriesterase K07048 PTER; phosphotriesterase-related protein D JIR001_10970 hydrolase K07048 PTER; phosphotriesterase-related protein D JIR001_08400 fxsA; membrane protein FxsA K07113 fxsA; UPF0716 protein FxsA D JIR001_27190 ctaG; protein CtaG K02862 ctaG; putative membrane protein D JIR001_00200 phage infection protein K01421 yhgE; putative membrane protein D JIR001_29300 membrane protein K08972 K08972; putative membrane protein D JIR001_09290 membrane protein K08972 K08972; putative membrane protein D JIR001_27180 membrane protein K08976 K08976; putative membrane protein C 99997 Function unknown D JIR001_07370 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D JIR001_04210 hypothetical protein K06889 K06889; uncharacterized protein D JIR001_02820 membrane protein K06890 K06890; uncharacterized protein D JIR001_24900 yneT; hypothetical protein K06929 K06929; uncharacterized protein D JIR001_19290 UPF0109 protein K06960 K06960; uncharacterized protein D JIR001_01560 yacP; hypothetical protein K06962 K06962; uncharacterized protein D JIR001_21540 yugP; putative membrane protease YugP K06973 K06973; uncharacterized protein D JIR001_22730 hypothetical protein K07006 K07006; uncharacterized protein D JIR001_01220 ypzJ; hypothetical protein K07069 K07069; uncharacterized protein D JIR001_25670 yjnA; UPF0721 transmembrane protein YjnA K07090 K07090; uncharacterized protein D JIR001_28010 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D JIR001_05930 yunE; UPF0721 transmembrane protein YunE K07090 K07090; uncharacterized protein D JIR001_22710 hypothetical protein K07093 K07093; uncharacterized protein D JIR001_15010 phosphoesterase K07095 K07095; uncharacterized protein D JIR001_09890 phosphoesterase K07095 K07095; uncharacterized protein D JIR001_21210 ykoQ; putative metallophosphoesterase YkoQ K07098 K07098; uncharacterized protein D JIR001_12840 ser/threonine protein phosphatase K07099 K07099; uncharacterized protein D JIR001_30390 yhjN; hypothetical protein K07120 K07120; uncharacterized protein D JIR001_17800 putative oxidoreductase K07124 K07124; uncharacterized protein D JIR001_27850 short-chain dehydrogenase K07124 K07124; uncharacterized protein D JIR001_01230 dltE; short-chain dehydrogenase K07124 K07124; uncharacterized protein D JIR001_04570 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein D JIR001_15270 hypothetical protein K07161 K07161; uncharacterized protein D JIR001_31980 ytjA; putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D JIR001_22070 hypothetical protein K09117 K09117; uncharacterized protein D JIR001_00820 hypothetical protein K09145 K09145; uncharacterized protein D JIR001_15250 hypothetical protein K09386 K09386; uncharacterized protein D JIR001_24820 hypothetical protein K09763 K09763; uncharacterized protein D JIR001_04650 hypothetical protein K09763 K09763; uncharacterized protein D JIR001_18380 hypothetical protein K09764 K09764; uncharacterized protein D JIR001_07140 yuiD; putative membrane protein YuiD K09775 K09775; uncharacterized protein D JIR001_00590 hypothetical protein K09776 K09776; uncharacterized protein D JIR001_21090 hypothetical protein K09779 K09779; uncharacterized protein D JIR001_23230 yjpA; hypothetical protein K09780 K09780; uncharacterized protein D JIR001_07910 yhbH; stress response UPF0229 protein YhbH K09786 K09786; uncharacterized protein D JIR001_19320 UPF0122 protein K09787 K09787; uncharacterized protein D JIR001_21440 hypothetical protein K09790 K09790; uncharacterized protein D JIR001_17660 membrane protein K09793 K09793; uncharacterized protein D JIR001_03430 hypothetical protein K09928 K09928; uncharacterized protein D JIR001_23390 hypothetical protein K09940 K09940; uncharacterized protein D JIR001_17130 hypothetical protein K09942 K09942; uncharacterized protein D JIR001_19360 hypothetical protein K09957 K09957; uncharacterized protein D JIR001_05530 hypothetical protein K09959 K09959; uncharacterized protein D JIR001_08260 fra; intracellular iron chaperone frataxin K05937 K05937; uncharacterized protein D JIR001_22890 putative nucleotidase K05967 K05967; uncharacterized protein D JIR001_15490 hypothetical protein K05739 seaA; uncharacterized protein D JIR001_12750 hypothetical protein K07502 yprB; uncharacterized protein D JIR001_10550 hypothetical protein K07584 ysxB; uncharacterized protein D JIR001_26650 phosphate transport regulator K07220 K07220; uncharacterized protein D JIR001_27300 ygaC; UPF0374 protein YgaC K07586 ygaC; uncharacterized protein D JIR001_18410 hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 14, 2024