+E Transcription factors KO #

  Transcription Factors - Polycladomyces abyssicola

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family C DeoR family D JIR001_16630 GntR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D JIR001_04480 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D JIR001_30220 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D JIR001_16640 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D JIR001_21900 tlyC; hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D JIR001_24610 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D JIR001_07150 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D JIR001_29380 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D JIR001_26580 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D JIR001_08330 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D JIR001_09390 fadR; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D JIR001_07480 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family C LuxR family D JIR001_09690 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein C MarR family D JIR001_13650 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D JIR001_09840 ysmB; putative HTH-type transcriptional regulator YsmB K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D JIR001_17630 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D JIR001_18870 hypothetical protein K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes D JIR001_26680 yfmP; HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D JIR001_14550 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D JIR001_00240 zur; zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D JIR001_26920 perR; peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D JIR001_13570 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family C Rrf2 family D JIR001_22870 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D JIR001_14830 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_14860 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_18470 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_18520 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D JIR001_15970 czrA; HTH-type transcriptional repressor CzrA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D JIR001_09000 hypothetical protein K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons C XRE family D JIR001_16010 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D JIR001_12980 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D JIR001_16120 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D JIR001_04060 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D JIR001_00630 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D JIR001_26820 aorR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_05550 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_05820 acoR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D JIR001_31270 rocR; arginine utilization regulatory protein K06714 rocR; arginine utilization regulatory protein D JIR001_03290 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D JIR001_18620 codY_1; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D JIR001_27280 codY_2; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor B Ribbon-helix-helix C CopG family D JIR001_02580 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D JIR001_19010 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator D JIR001_17300 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator D JIR001_08560 manR_1; transcriptional regulator ManR K02538 manR; mannose operon transcriptional activator C Others D JIR001_20670 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D JIR001_07720 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D JIR001_14750 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D JIR001_24350 abrB_3; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_00440 abrB_1; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_05290 abrB_2; SpoVT/AbrB family regulatory protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D JIR001_00730 AbrB family transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D JIR001_31870 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_31890 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D JIR001_05160 sbnI; bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI K23371 sbnI; L-serine kinase (ATP) / ParB family transcriptional regulator, heme-responsive regulator [EC:2.7.1.225] D JIR001_01470 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D JIR001_13420 glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D JIR001_13870 argR2; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D JIR001_19840 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D JIR001_22210 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D JIR001_21600 thiE_2; thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D JIR001_01380 ctsR; transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D JIR001_31010 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D JIR001_03680 phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D JIR001_28860 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D JIR001_15620 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D JIR001_20100 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D JIR001_20540 transcriptional regulator K06314 rsfA; prespore-specific regulator D JIR001_24810 hypothetical protein K06314 rsfA; prespore-specific regulator D JIR001_08690 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D JIR001_20420 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0