+E Transcription factors KO
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Transcription Factors - Polycladomyces abyssicola
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
C DeoR family
D JIR001_16630 GntR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D JIR001_04480 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D JIR001_30220 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D JIR001_16640 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D JIR001_21900 tlyC; hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D JIR001_24610 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D JIR001_07150 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D JIR001_29380 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D JIR001_26580 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D JIR001_08330 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D JIR001_09390 fadR; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D JIR001_07480 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
C LuxR family
D JIR001_09690 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D JIR001_13650 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D JIR001_09840 ysmB; putative HTH-type transcriptional regulator YsmB K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D JIR001_17630 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D JIR001_18870 hypothetical protein K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes
D JIR001_26680 yfmP; HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D JIR001_14550 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D JIR001_00240 zur; zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D JIR001_26920 perR; peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D JIR001_13570 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
C Rrf2 family
D JIR001_22870 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D JIR001_14830 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D JIR001_14860 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D JIR001_18470 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D JIR001_18520 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D JIR001_15970 czrA; HTH-type transcriptional repressor CzrA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D JIR001_09000 hypothetical protein K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D JIR001_16010 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D JIR001_12980 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D JIR001_16120 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D JIR001_04060 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D JIR001_00630 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D JIR001_26820 aorR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D JIR001_05550 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D JIR001_05820 acoR; sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D JIR001_31270 rocR; arginine utilization regulatory protein K06714 rocR; arginine utilization regulatory protein
D JIR001_03290 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D JIR001_18620 codY_1; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D JIR001_27280 codY_2; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
B Ribbon-helix-helix
C CopG family
D JIR001_02580 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D JIR001_19010 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
D JIR001_17300 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator
D JIR001_08560 manR_1; transcriptional regulator ManR K02538 manR; mannose operon transcriptional activator
C Others
D JIR001_20670 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D JIR001_07720 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D JIR001_14750 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D JIR001_24350 abrB_3; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D JIR001_00440 abrB_1; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D JIR001_05290 abrB_2; SpoVT/AbrB family regulatory protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D JIR001_00730 AbrB family transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D JIR001_31870 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JIR001_31890 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JIR001_05160 sbnI; bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI K23371 sbnI; L-serine kinase (ATP) / ParB family transcriptional regulator, heme-responsive regulator [EC:2.7.1.225]
D JIR001_01470 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D JIR001_13420 glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D JIR001_13870 argR2; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D JIR001_19840 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D JIR001_22210 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D JIR001_21600 thiE_2; thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D JIR001_01380 ctsR; transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D JIR001_31010 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D JIR001_03680 phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D JIR001_28860 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D JIR001_15620 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D JIR001_20100 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D JIR001_20540 transcriptional regulator K06314 rsfA; prespore-specific regulator
D JIR001_24810 hypothetical protein K06314 rsfA; prespore-specific regulator
D JIR001_08690 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D JIR001_20420 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0