+D GENES KO
#
KEGG Orthology (KO) - Candidatus Pseudomonas adelgestsugas
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pade00010]
D C3B55_00379 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D C3B55_00104 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C3B55_00368 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C3B55_00712 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C3B55_00103 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C3B55_00164 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C3B55_00925 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C3B55_00196 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C3B55_00195 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00148 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:pade00020]
D C3B55_00666 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D C3B55_00620 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D C3B55_00451 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D C3B55_00661 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D C3B55_00660 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00657 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C3B55_00658 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C3B55_00663 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C3B55_00662 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C3B55_00665 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C3B55_00664 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C3B55_00926 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D C3B55_00018 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D C3B55_00019 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D C3B55_00148 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D C3B55_00196 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C3B55_00195 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:pade00030]
D C3B55_00379 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C3B55_00121 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D C3B55_00101 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D C3B55_00063 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00403 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D C3B55_00980 Glucosaminate ammonia-lyase K22345 E4.3.1.9; glucosaminate ammonia-lyase [EC:4.3.1.9]
D C3B55_00104 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:pade00040]
D C3B55_00477 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C3B55_00121 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:pade00051]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D C3B55_00104 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C3B55_00368 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:pade00052]
D C3B55_00212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C3B55_00477 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:pade00500]
D C3B55_00477 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00379 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pade00520]
D C3B55_00014 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D C3B55_00367 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D C3B55_00013 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D C3B55_00514 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C3B55_00468 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00477 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C3B55_00212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C3B55_00379 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00620 Pyruvate metabolism [PATH:pade00620]
D C3B55_00196 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C3B55_00195 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00925 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C3B55_00756 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D C3B55_00251 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D C3B55_00250 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D C3B55_00801 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D C3B55_00489 gloB; Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D C3B55_00018 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D C3B55_00019 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D C3B55_00926 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D C3B55_00148 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pade00630]
D C3B55_00666 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D C3B55_00620 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D C3B55_00902 phaJ; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_00349 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00640 Propanoate metabolism [PATH:pade00640]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00756 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D C3B55_00251 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D C3B55_00250 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D C3B55_00801 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D C3B55_00658 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C3B55_00657 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C3B55_00620 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:pade00650]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00702 Putative reductase/y4119/YP_4011 K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D C3B55_00902 phaJ; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D C3B55_00663 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C3B55_00662 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C3B55_00665 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C3B55_00664 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C3B55_00141 davD; Glutarate-semialdehyde dehydrogenase DavD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C3B55_00388 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pade00660]
D C3B55_00388 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C3B55_00658 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C3B55_00657 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:pade00562]
D C3B55_00967 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D C3B55_00368 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pade00190]
D C3B55_00447 ndhC; NAD(P)H-quinone oxidoreductase subunit 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D C3B55_00446 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D C3B55_00445 nuoC; NADH-quinone oxidoreductase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D C3B55_00444 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D C3B55_00443 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D C3B55_00442 nuoG; NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D C3B55_00441 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D C3B55_00440 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D C3B55_00439 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D C3B55_00438 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D C3B55_00437 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D C3B55_00436 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D C3B55_00435 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D C3B55_00663 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C3B55_00662 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C3B55_00665 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C3B55_00664 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C3B55_00974 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C3B55_00975 cyoD; Cytochrome bo(3) ubiquinol oxidase subunit 4 K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D C3B55_00976 cyoC; Cytochrome bo(3) ubiquinol oxidase subunit 3 K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D C3B55_00977 cyoB; Cytochrome bo(3) ubiquinol oxidase subunit 1 K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D C3B55_00978 cyoA; Cytochrome bo(3) ubiquinol oxidase subunit 2 precursor K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D C3B55_00009 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D C3B55_00011 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D C3B55_00010 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D C3B55_00008 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D C3B55_00012 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D C3B55_00005 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D C3B55_00007 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D C3B55_00006 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D C3B55_00319 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D C3B55_00047 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:pade00710]
D C3B55_00103 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C3B55_00712 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C3B55_00104 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D C3B55_00101 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D C3B55_00063 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D C3B55_00368 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C3B55_00121 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D C3B55_00148 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00720 Other carbon fixation pathways [PATH:pade00720]
D C3B55_00018 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D C3B55_00019 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D C3B55_00926 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D C3B55_00663 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C3B55_00662 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C3B55_00665 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C3B55_00664 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C3B55_00657 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C3B55_00658 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C3B55_00451 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D C3B55_00620 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D C3B55_00756 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D C3B55_00251 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D C3B55_00250 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D C3B55_00801 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D C3B55_00610 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D C3B55_00097 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00680 Methane metabolism [PATH:pade00680]
D C3B55_00349 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C3B55_00104 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D C3B55_00164 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D C3B55_00697 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:pade00910]
D C3B55_00623 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_01000 cynT; Carbonic anhydrase 1 K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pade00920]
D C3B55_00415 cysN; Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D C3B55_00414 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D C3B55_00151 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D C3B55_00862 cysH; Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D C3B55_00484 sir; Sulfite reductase [ferredoxin] K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D C3B55_00222 rhdA; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C3B55_00143 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D C3B55_00084 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D C3B55_00798 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pade00061]
D C3B55_00756 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D C3B55_00251 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D C3B55_00250 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D C3B55_00801 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D C3B55_00877 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D C3B55_00879 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C3B55_00830 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D C3B55_00654 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D C3B55_00876 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C3B55_00878 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C3B55_00653 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D C3B55_00760 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D C3B55_00702 Putative reductase/y4119/YP_4011 K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D C3B55_00901 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pade00071]
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00645 fadE; Acyl-coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D C3B55_00901 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
C 00564 Glycerophospholipid metabolism [PATH:pade00564]
D C3B55_00651 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D C3B55_00766 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D C3B55_00393 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D C3B55_00221 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D C3B55_00592 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:pade00592]
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pade00230]
D C3B55_00150 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00403 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D C3B55_00448 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D C3B55_00248 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C3B55_00855 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D C3B55_00748 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D C3B55_00947 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C3B55_00957 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C3B55_00946 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C3B55_00028 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D C3B55_00887 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C3B55_00473 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D C3B55_00026 spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D C3B55_00233 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D C3B55_00498 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C3B55_00116 apaH; Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D C3B55_00415 cysN; Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D C3B55_00414 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:pade00240]
D C3B55_00362 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C3B55_00361 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C3B55_00089 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D C3B55_00784 pyrC_2; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D C3B55_00088 pyrC_1; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D C3B55_00860 pyrD; Dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D C3B55_00030 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D C3B55_00647 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D C3B55_00769 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D C3B55_00957 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C3B55_00754 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D C3B55_00693 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D C3B55_00748 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D C3B55_00744 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D C3B55_00887 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C3B55_00473 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D C3B55_00874 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D C3B55_00071 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pade00250]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00950 ramA; (R)-stereoselective amidase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D C3B55_00233 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D C3B55_00448 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D C3B55_00089 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D C3B55_00141 davD; Glutarate-semialdehyde dehydrogenase DavD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C3B55_00623 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D C3B55_00192 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_00362 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C3B55_00361 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C3B55_00014 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C 00260 Glycine, serine and threonine metabolism [PATH:pade00260]
D C3B55_00891 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C3B55_00803 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C3B55_00938 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C3B55_00995 thrB; Homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D C3B55_00937 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D C3B55_00349 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C3B55_00164 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D C3B55_00697 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D C3B55_00393 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D C3B55_01003 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D C3B55_01002 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pade00270]
D C3B55_00143 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D C3B55_00502 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D C3B55_00100 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D C3B55_00098 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D C3B55_00891 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C3B55_00803 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C3B55_00938 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C3B55_00084 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D C3B55_00798 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D C3B55_00145 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D C3B55_00092 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00222 rhdA; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C3B55_00837 cysM; Cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D C3B55_00697 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pade00280]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pade00290]
D C3B55_00388 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00300 Lysine biosynthesis [PATH:pade00300]
D C3B55_00938 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C3B55_00891 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C3B55_00803 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C3B55_00725 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C3B55_00360 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D C3B55_00493 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D C3B55_00495 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D C3B55_00036 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D C3B55_00037 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D C3B55_00581 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C3B55_00580 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pade00310]
D C3B55_00660 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00141 davD; Glutarate-semialdehyde dehydrogenase DavD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:pade00220]
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_00362 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C3B55_00361 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C3B55_00623 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:pade00330]
D C3B55_00503 nspC; Carboxynorspermidine/carboxyspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D C3B55_00894 aruC; Succinylornithine transaminase/acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D C3B55_00086 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D C3B55_00192 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:pade00340]
D C3B55_00513 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D C3B55_00232 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D C3B55_00175 hisE; Phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D C3B55_00176 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D C3B55_00161 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D C3B55_00160 hisH1; Imidazole glycerol phosphate synthase subunit HisH 1 K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D C3B55_00162 hisF; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D C3B55_00159 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00512 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:pade00350]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D C3B55_00141 davD; Glutarate-semialdehyde dehydrogenase DavD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:pade00360]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00380 Tryptophan metabolism [PATH:pade00380]
D C3B55_00660 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pade00400]
D C3B55_00683 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D C3B55_00187 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D C3B55_00252 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D C3B55_01005 aroE; Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D C3B55_00186 aroK; Shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D C3B55_00472 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D C3B55_00816 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D C3B55_00123 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D C3B55_00802 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D C3B55_00124 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D C3B55_01003 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D C3B55_01002 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D C3B55_00696 pheA; P-protein K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D C3B55_00694 cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00430 Taurine and hypotaurine metabolism
D C3B55_00623 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pade00450]
D C3B55_00502 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D C3B55_00415 cysN; Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D C3B55_00414 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D C3B55_00782 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D C3B55_00349 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pade00470]
D C3B55_00397 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C3B55_00410 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D C3B55_00578 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C3B55_00036 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D C3B55_00037 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pade00480]
D C3B55_00145 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D C3B55_00092 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D C3B55_00562 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D C3B55_00478 gor; Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D C3B55_00451 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:pade00540]
D C3B55_00759 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D C3B55_00570 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D C3B55_00761 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D C3B55_00597 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D C3B55_00758 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D C3B55_00465 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D C3B55_00521 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D C3B55_00753 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D C3B55_00467 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D C3B55_00216 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D C3B55_01011 htrB_2; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D C3B55_00823 htrB_1; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D C3B55_00588 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D C3B55_00211 hldE; Bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D C3B55_01014 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D C3B55_00198 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D C3B55_00197 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D C3B55_00200 rfaP; Lipopolysaccharide core heptose(I) kinase RfaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D C3B55_00199 rfaG; Lipopolysaccharide core biosynthesis protein RfaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pade00541]
D C3B55_00477 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C3B55_00212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C3B55_00841 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C3B55_00152 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C3B55_00853 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D C3B55_00013 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D C3B55_00685 pglF; UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:pade00550]
D C3B55_00514 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C3B55_00468 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C3B55_00575 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D C3B55_00578 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C3B55_00581 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C3B55_00397 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C3B55_00580 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D C3B55_00767 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D C3B55_00481 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C3B55_00579 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C3B55_00576 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D C3B55_00386 mrcB; Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D C3B55_00325 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D C3B55_00582 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C3B55_00329 dacC; D-alanyl-D-alanine carboxypeptidase DacC precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:pade00552]
D C3B55_00481 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C3B55_00685 pglF; UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pade00543]
D C3B55_00143 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pade00730]
D C3B55_00964 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C3B55_00169 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D C3B55_00316 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D C3B55_00314 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D C3B55_00498 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pade00740]
D C3B55_00315 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D C3B55_00311 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D C3B55_00893 ribH2; 6,7-dimethyl-8-ribityllumazine synthase 2 K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D C3B55_00312 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D C3B55_00419 ribF; Riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D C3B55_00321 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:pade00750]
D C3B55_00743 pdxH; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D C3B55_00102 epd; D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D C3B55_00719 pdxB; Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D C3B55_00697 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C3B55_00118 pdxA1; 4-hydroxythreonine-4-phosphate dehydrogenase 1 K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D C3B55_00555 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D C3B55_00937 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pade00760]
D C3B55_00243 pncB2; Nicotinate phosphoribosyltransferase 2 K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D C3B55_00748 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D C3B55_00323 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D C3B55_00242 nadE; NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D C3B55_00777 pncC; Nicotinamide-nucleotide amidohydrolase PncC K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D C3B55_00470 ppnK; putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D C3B55_00711 sthA; Soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D C3B55_00141 davD; Glutarate-semialdehyde dehydrogenase DavD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:pade00770]
D C3B55_00388 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C3B55_00259 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D C3B55_00032 coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D C3B55_00077 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D C3B55_00430 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
C 00780 Biotin metabolism [PATH:pade00780]
D C3B55_00654 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D C3B55_00876 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C3B55_00878 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C3B55_00760 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D C3B55_00094 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D C3B55_00107 bioD1; ATP-dependent dethiobiotin synthetase BioD 1 K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D C3B55_00106 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D C3B55_00258 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pade00785]
D C3B55_00331 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D C3B55_00332 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00196 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C3B55_00195 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C3B55_00661 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D C3B55_00660 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D C3B55_00055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pade00790]
D C3B55_00820 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D C3B55_00114 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D C3B55_00381 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D C3B55_00366 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D C3B55_00072 dhfrIII; Dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D C3B55_00800 folC; Bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D C3B55_00315 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D C3B55_00625 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D C3B55_00911 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D C3B55_00973 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D C3B55_00707 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:pade00670]
D C3B55_00072 dhfrIII; Dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D C3B55_00610 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D C3B55_00349 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C3B55_00248 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C3B55_01009 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C3B55_00071 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D C3B55_00097 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D C3B55_00052 putative 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pade00860]
D C3B55_00806 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C3B55_00407 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D C3B55_00342 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D C3B55_00046 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D C3B55_00039 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D C3B55_00040 hemD; Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D C3B55_00190 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D C3B55_01006 hemF; Coproporphyrinogen-III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D C3B55_00129 Copper resistance protein D K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D C3B55_00413 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D C3B55_00041 hemX; Putative uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D C3B55_00458 cysG; Siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D C3B55_00974 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C3B55_00305 bfr_1; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D C3B55_00617 bfr_2; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pade00130]
D C3B55_00024 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D C3B55_00051 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D C3B55_00321 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D C3B55_00054 ubiI; 2-octaprenylphenol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D C3B55_00700 ubiG; Ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D C3B55_00053 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D C3B55_00179 ubiE; Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D C3B55_00127 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pade00900]
D C3B55_00316 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D C3B55_00765 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D C3B55_00750 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D C3B55_00405 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D C3B55_00749 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D C3B55_00954 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D C3B55_00422 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D C3B55_00321 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D C3B55_00317 ispA; Farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C3B55_00985 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D C3B55_00767 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:pade00907]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D C3B55_00101 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pade00523]
D C3B55_00841 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C3B55_00152 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C3B55_00853 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D C3B55_00885 npt; 4'-phosphopantetheinyl transferase Npt K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
C 01055 Biosynthesis of vancomycin group antibiotics
D C3B55_00152 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:pade00261]
D C3B55_00415 cysN; Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D C3B55_00414 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D C3B55_00891 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C3B55_00803 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C3B55_00725 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C3B55_00360 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pade00521]
D C3B55_00031 algC; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D C3B55_00967 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D C3B55_00841 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C3B55_00152 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C3B55_00853 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:pade00525]
D C3B55_00841 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C3B55_00152 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pade00401]
D C3B55_00694 cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D C3B55_00879 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C3B55_00878 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D C3B55_00877 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pade00999]
D C3B55_00100 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D C3B55_01005 aroE; Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pade00362]
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D C3B55_00959 fdx_2; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation
D C3B55_00321 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D C3B55_00715 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:pade00930]
D C3B55_00716 fadB; Fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pade03020]
D C3B55_00270 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C3B55_00271 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C3B55_00303 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C3B55_00027 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pade03010]
D C3B55_00692 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D C3B55_00771 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D C3B55_00283 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D C3B55_00302 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D C3B55_00294 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D C3B55_00237 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D C3B55_00273 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D C3B55_00291 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D C3B55_00538 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D C3B55_00276 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D C3B55_00301 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D C3B55_00272 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D C3B55_00300 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D C3B55_00290 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D C3B55_00377 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D C3B55_00942 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D C3B55_00286 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D C3B55_00238 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D C3B55_00281 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D C3B55_00417 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D C3B55_00112 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D C3B55_00267 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D C3B55_00280 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D C3B55_00277 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D C3B55_00278 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D C3B55_00289 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D C3B55_00292 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D C3B55_00269 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D C3B55_00240 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D C3B55_00268 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D C3B55_00266 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D C3B55_00539 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D C3B55_00287 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D C3B55_00296 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D C3B55_00284 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D C3B55_00304 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D C3B55_00293 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D C3B55_00939 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D C3B55_00789 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D C3B55_00984 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D C3B55_00282 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D C3B55_00279 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D C3B55_00288 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D C3B55_00402 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D C3B55_00983 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D C3B55_00033 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D C3B55_00285 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D C3B55_00295 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D C3B55_00183 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D C3B55_00880 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D C3B55_00034 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D C3B55_01018 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D C3B55_00790 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D C3B55_00298 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D C3B55_00256 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C3B55_00257 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C3B55_00630 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pade00970]
D C3B55_00631 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C3B55_00805 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C3B55_00139 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00609 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00889 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00888 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00427 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D C3B55_00796 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D C3B55_00550 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D C3B55_00404 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C3B55_00804 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C3B55_00591 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C3B55_00261 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C3B55_00608 tRNA-His K14226 tRNA-His; tRNA His
D C3B55_00133 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D C3B55_00607 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00475 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00972 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00370 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00234 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D C3B55_00910 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C3B55_00935 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00371 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00109 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00399 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00156 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D C3B55_00428 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C3B55_00723 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00890 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00865 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00469 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00262 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00154 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00432 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00263 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D C3B55_00260 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D C3B55_00795 tRNA-Val K14237 tRNA-Val; tRNA Val
D C3B55_00797 tRNA-Val K14237 tRNA-Val; tRNA Val
D C3B55_00806 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C3B55_00535 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D C3B55_00536 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D C3B55_00534 aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D C3B55_00596 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D C3B55_00892 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C3B55_00917 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D C3B55_01012 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D C3B55_01013 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D C3B55_00792 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C3B55_00457 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C3B55_00595 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C3B55_00782 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C3B55_01009 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C3B55_00565 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C3B55_00335 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C3B55_00420 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C3B55_00499 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C3B55_00181 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C3B55_00934 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C3B55_00788 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C3B55_00787 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C3B55_00132 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C3B55_00541 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pade03060]
D C3B55_00297 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C3B55_00264 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C3B55_00369 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D C3B55_00969 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C3B55_00968 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C3B55_00970 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C3B55_01021 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C3B55_00920 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C3B55_00943 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D C3B55_00558 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C3B55_00421 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pade04122]
D C3B55_00964 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C3B55_00222 rhdA; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C3B55_00720 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D C3B55_00460 tusB; Protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D C3B55_00461 dsrF; Intracellular sulfur oxidation protein DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D C3B55_00462 dsrE; Putative sulfurtransferase DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D C3B55_00459 tusE; Sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D C3B55_00449 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D C3B55_00169 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:pade03018]
D C3B55_00066 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D C3B55_00884 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C3B55_00378 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D C3B55_00096 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D C3B55_00235 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D C3B55_00679 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C3B55_00050 hypothetical protein K03628 rho; transcription termination factor Rho
D C3B55_00358 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D C3B55_00928 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C3B55_00229 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D C3B55_00047 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D C3B55_00382 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pade03030]
D C3B55_00486 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C3B55_00757 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C3B55_00856 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C3B55_00873 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C3B55_00333 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C3B55_01016 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C3B55_00241 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D C3B55_00111 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00487 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pade03410]
D C3B55_00783 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D C3B55_00732 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D C3B55_00075 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C3B55_00599 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pade03420]
D C3B55_00713 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D C3B55_00306 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D C3B55_00807 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D C3B55_00593 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D C3B55_00016 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pade03430]
D C3B55_00016 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C3B55_00924 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00757 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C3B55_01016 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C3B55_00856 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C3B55_00333 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C3B55_00873 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C3B55_00486 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pade03440]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00987 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D C3B55_00988 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D C3B55_00986 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D C3B55_00757 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C3B55_01016 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C3B55_00856 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C3B55_00333 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C3B55_00873 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C3B55_00486 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C3B55_00182 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pade02010]
D C3B55_00059 potF; Putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D C3B55_00062 ydcV; Inner membrane ABC transporter permease protein YdcV K11074 potI; putrescine transport system permease protein
D C3B55_00061 potH; Putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein
D C3B55_00060 potA; Spermidine/putrescine import ATP-binding protein PotA K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D C3B55_00517 Toluene tolerance, Ttg2 K07323 mlaC; phospholipid transport system substrate-binding protein
D C3B55_00518 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D C3B55_00519 mlaE; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D C3B55_00516 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D C3B55_00520 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D C3B55_00899 argT; Lysine-arginine-ornithine-binding periplasmic protein precursor K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D C3B55_00897 occM; Octopine transport system permease protein OccM K10023 aotM; arginine/ornithine transport system permease protein
D C3B55_00898 hisQ; Histidine transport system permease protein HisQ K10024 aotQ; arginine/ornithine transport system permease protein
D C3B55_00896 hisP; Histidine transport ATP-binding protein HisP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D C3B55_00616 yfmC; Fe(3+)-citrate-binding protein YfmC precursor K23181 fecB; ferric citrate transport system substrate-binding protein
D C3B55_00614 fecD; Fe(3+) dicitrate transport system permease protein FecD K23182 fecD; ferric citrate transport system permease protein
D C3B55_00615 fecC; Fe(3+) dicitrate transport system permease protein FecC K23183 fecC; ferric citrate transport system permease protein
D C3B55_00613 yusV; putative siderophore transport system ATP-binding protein YusV K23184 fecE; ferric citrate transport system ATP-binding protein [EC:7.2.2.18]
D C3B55_00998 znuB; High-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D C3B55_00997 znuC; Zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D C3B55_00842 tagG; Teichoic acid translocation permease protein TagG K09690 wzm; homopolymeric O-antigen transport system permease protein
D C3B55_00843 tagH; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D C3B55_00708 lolC_1; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D C3B55_00710 lolC_2; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D C3B55_00709 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D C3B55_00674 ccmC; Heme exporter protein C K02195 ccmC; heme exporter protein C
D C3B55_00675 ccmB; Heme exporter protein B K02194 ccmB; heme exporter protein B
D C3B55_00676 ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D C3B55_00561 lptF; Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D C3B55_00560 lptG; Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D C3B55_00524 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D C3B55_00210 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D C3B55_00136 apxIB; Toxin RTX-I translocation ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D C3B55_00544 bacA; Vitamin B12 transport ATP-binding protein BacA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
D C3B55_00525 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:pade03070]
D C3B55_00969 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C3B55_00968 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C3B55_00264 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C3B55_00369 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D C3B55_00297 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C3B55_00970 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C3B55_01021 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C3B55_00920 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C3B55_00943 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pade02020]
D C3B55_00147 envZ; Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D C3B55_00146 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D C3B55_00727 mucD; putative periplasmic serine endoprotease DegP-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D C3B55_01017 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_00545 hypothetical protein K15012 regA; two-component system, response regulator RegA
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pade02024]
D C3B55_00229 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D C3B55_00683 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D C3B55_00901 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C3B55_00315 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D C3B55_00311 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D C3B55_00736 arpC; Antibiotic efflux pump outer membrane protein ArpC precursor K18139 oprM; outer membrane protein, multidrug efflux system
D C3B55_01021 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C3B55_00264 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C3B55_00369 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D C3B55_00297 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C3B55_00970 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C3B55_00920 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C3B55_00943 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D C3B55_00110 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pade01501]
D C3B55_00734 ttgA; putative efflux pump periplasmic linker TtgA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D C3B55_00735 ttgB; putative efflux pump membrane transporter TtgB K18138 acrB; multidrug efflux pump
D C3B55_00736 arpC; Antibiotic efflux pump outer membrane protein ArpC precursor K18139 oprM; outer membrane protein, multidrug efflux system
D C3B55_00325 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D C3B55_00582 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pade01502]
D C3B55_00397 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C3B55_00580 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D C3B55_00579 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C3B55_00576 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pade01503]
D C3B55_00227 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D C3B55_00727 mucD; putative periplasmic serine endoprotease DegP-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D C3B55_00992 dsbA; Thiol:disulfide interchange protein DsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D C3B55_00734 ttgA; putative efflux pump periplasmic linker TtgA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D C3B55_00735 ttgB; putative efflux pump membrane transporter TtgB K18138 acrB; multidrug efflux pump
D C3B55_00759 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pade01000]
C 01001 Protein kinases [BR:pade01001]
D C3B55_00255 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D C3B55_00147 envZ; Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pade01009]
D C3B55_00098 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D C3B55_00863 Phosphorylated carbohydrates phosphatase K17623 PUDP; pseudouridine 5'-phosphatase [EC:3.1.3.96]
C 01002 Peptidases and inhibitors [BR:pade01002]
D C3B55_00421 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D C3B55_00946 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C3B55_00014 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D C3B55_01001 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D C3B55_00562 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D C3B55_00495 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D C3B55_00490 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D C3B55_00634 Aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D C3B55_00365 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D C3B55_00678 htpX; Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D C3B55_00764 rseP; Regulator of sigma-E protease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D C3B55_00727 mucD; putative periplasmic serine endoprotease DegP-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D C3B55_00329 dacC; D-alanyl-D-alanine carboxypeptidase DacC precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D C3B55_00605 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D C3B55_00603 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D C3B55_00558 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C3B55_00636 prc; Tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D C3B55_00882 sppA; Putative signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D C3B55_00471 sohB; putative protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D C3B55_00527 peptidase PmbA K03592 pmbA; PmbA protein
D C3B55_00528 protease TldD K03568 tldD; TldD protein
D C3B55_00231 hflC; Modulator of FtsH protease HflC K04087 hflC; modulator of FtsH protease HflC
D C3B55_00230 hflK; Modulator of FtsH protease HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:pade01003]
D C3B55_00386 mrcB; Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pade01005]
D C3B55_00759 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D C3B55_00758 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D C3B55_00570 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D C3B55_00761 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D C3B55_00597 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D C3B55_00465 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D C3B55_01011 htrB_2; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D C3B55_00823 htrB_1; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D C3B55_00216 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D C3B55_00753 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D C3B55_00467 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D C3B55_00521 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D C3B55_00198 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D C3B55_00197 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D C3B55_00199 rfaG; Lipopolysaccharide core biosynthesis protein RfaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D C3B55_00200 rfaP; Lipopolysaccharide core heptose(I) kinase RfaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D C3B55_00208 wfgD_1; UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD K12988 wapR; alpha-1,3-rhamnosyltransferase [EC:2.4.1.-]
D C3B55_00588 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D C3B55_01014 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D C3B55_00211 hldE; Bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D C3B55_00686 pglC; Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pade01011]
D C3B55_00514 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C3B55_00468 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C3B55_00575 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D C3B55_00578 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C3B55_00581 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C3B55_00397 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C3B55_00410 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D C3B55_00579 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C3B55_00576 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D C3B55_00481 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C3B55_00418 murJ; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D C3B55_00386 mrcB; Penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D C3B55_00325 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D C3B55_00582 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C3B55_00329 dacC; D-alanyl-D-alanine carboxypeptidase DacC precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D C3B55_00327 mltB; Membrane-bound lytic murein transglycosylase B precursor K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D C3B55_00945 mltF; Membrane-bound lytic murein transglycosylase F precursor K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D C3B55_00875 putative aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D C3B55_00328 RlpA-like protein precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D C3B55_00227 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D C3B55_00991 amiD; N-acetylmuramoyl-L-alanine amidase AmiD precursor K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pade01004]
D C3B55_00879 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C3B55_00830 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D C3B55_00654 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D C3B55_00876 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C3B55_00878 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C3B55_00653 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D C3B55_00760 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D C3B55_00702 Putative reductase/y4119/YP_4011 K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D C3B55_00901 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 01008 Polyketide biosynthesis proteins [BR:pade01008]
D C3B55_00885 npt; 4'-phosphopantetheinyl transferase Npt K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
C 01006 Prenyltransferases [BR:pade01006]
D C3B55_00317 ispA; Farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C3B55_00985 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D C3B55_00767 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D C3B55_00228 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D C3B55_00024 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D C3B55_00974 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pade01007]
D C3B55_00806 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C3B55_00596 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D C3B55_00132 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C3B55_00541 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D C3B55_00595 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C3B55_00181 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C3B55_00782 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C3B55_00420 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C3B55_00565 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C3B55_00335 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C3B55_00499 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C3B55_00917 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D C3B55_01012 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D C3B55_01013 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D C3B55_00457 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C3B55_00934 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C3B55_00792 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C3B55_00892 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C3B55_00788 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C3B55_00787 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C3B55_00831 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D C3B55_00808 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D C3B55_00511 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C3B55_00894 aruC; Succinylornithine transaminase/acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D C3B55_00094 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D C3B55_00342 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D C3B55_00697 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pade00194]
D C3B55_00012 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D C3B55_00011 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D C3B55_00010 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D C3B55_00009 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D C3B55_00008 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D C3B55_00007 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D C3B55_00006 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D C3B55_00005 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D C3B55_00004 F0F1 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pade03000]
D C3B55_00551 cynR; HTH-type transcriptional regulator CynR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D C3B55_00682 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D C3B55_00258 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C3B55_00249 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D C3B55_00192 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C3B55_00812 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D C3B55_00726 gcvR; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D C3B55_00091 hypothetical protein K07735 algH; putative transcriptional regulator
D C3B55_00383 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D C3B55_00310 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:pade03021]
D C3B55_00303 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C3B55_00270 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C3B55_00271 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C3B55_00027 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D C3B55_00110 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D C3B55_00080 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D C3B55_00373 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D C3B55_00313 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D C3B55_00265 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D C3B55_00537 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
D C3B55_00383 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D C3B55_00363 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D C3B55_00050 hypothetical protein K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pade03019]
D C3B55_00884 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D C3B55_00530 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D C3B55_00557 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C3B55_00235 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D C3B55_00225 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D C3B55_00096 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D C3B55_00679 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C3B55_00378 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D C3B55_00050 hypothetical protein K03628 rho; transcription termination factor Rho
D C3B55_00358 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D C3B55_00928 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C3B55_00229 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D C3B55_00047 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D C3B55_00382 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D C3B55_00066 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D C3B55_00526 glmZ(sRNA)-inactivating NTPase K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:pade03011]
D C3B55_00692 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D C3B55_00771 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D C3B55_00283 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D C3B55_00302 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D C3B55_00294 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D C3B55_00237 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D C3B55_00273 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D C3B55_00291 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D C3B55_00538 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D C3B55_00276 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D C3B55_00301 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D C3B55_00272 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D C3B55_00300 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D C3B55_00290 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D C3B55_00377 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D C3B55_00942 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D C3B55_00286 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D C3B55_00238 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D C3B55_00281 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D C3B55_00417 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D C3B55_00112 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D C3B55_00267 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D C3B55_00280 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D C3B55_00277 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D C3B55_00278 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D C3B55_00289 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D C3B55_00292 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D C3B55_00240 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D C3B55_00268 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D C3B55_00266 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D C3B55_00269 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D C3B55_00539 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D C3B55_00287 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D C3B55_00296 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D C3B55_00284 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D C3B55_00304 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D C3B55_00293 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D C3B55_00939 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D C3B55_00789 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D C3B55_00984 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D C3B55_00282 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D C3B55_00279 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D C3B55_00288 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D C3B55_00983 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D C3B55_00033 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D C3B55_00285 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D C3B55_00295 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D C3B55_00183 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D C3B55_00880 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D C3B55_00034 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D C3B55_01018 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D C3B55_00790 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D C3B55_00298 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D C3B55_00402 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D C3B55_00630 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C3B55_00256 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C3B55_00257 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pade03009]
D C3B55_00557 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C3B55_00255 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D C3B55_00225 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D C3B55_00556 era; GTPase Era K03595 era; GTPase
D C3B55_00982 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D C3B55_00383 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D C3B55_00373 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D C3B55_00313 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D C3B55_00265 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D C3B55_00117 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D C3B55_01010 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D C3B55_00505 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D C3B55_00078 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D C3B55_00093 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D C3B55_00003 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D C3B55_00584 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D C3B55_00585 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D C3B55_00496 rsmJ; Ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D C3B55_00236 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D C3B55_00364 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D C3B55_00956 rlmN; Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D C3B55_00883 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D C3B55_00425 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D C3B55_00395 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D C3B55_00941 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D C3B55_00818 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D C3B55_00884 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D C3B55_00530 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D C3B55_00090 yqgF; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D C3B55_00679 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C3B55_00951 der; GTPase Der K03977 engA; GTPase
D C3B55_01007 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D C3B55_00026 spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D C3B55_00375 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D C3B55_00372 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D C3B55_00324 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D C3B55_00338 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D C3B55_00400 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D C3B55_00881 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pade03016]
D C3B55_00115 cca; Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D C3B55_00806 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C3B55_00934 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C3B55_00420 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C3B55_00335 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C3B55_00782 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C3B55_00596 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D C3B55_00181 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C3B55_00499 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C3B55_00917 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D C3B55_00892 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C3B55_00792 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C3B55_00457 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C3B55_00595 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C3B55_00565 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C3B55_00788 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C3B55_00787 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C3B55_00132 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C3B55_00541 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D C3B55_00128 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D C3B55_00081 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D C3B55_00376 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D C3B55_00964 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C3B55_01007 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D C3B55_00228 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D C3B55_00001 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D C3B55_00002 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D C3B55_00151 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D C3B55_01019 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D C3B55_00785 rnt; Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D C3B55_00029 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D C3B55_00721 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D C3B55_01012 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D C3B55_01013 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D C3B55_00554 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D C3B55_00704 dus; putative tRNA-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D C3B55_00940 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D C3B55_00966 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D C3B55_00449 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D C3B55_00720 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D C3B55_00460 tusB; Protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D C3B55_00461 dsrF; Intracellular sulfur oxidation protein DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D C3B55_00462 dsrE; Putative sulfurtransferase DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D C3B55_00459 tusE; Sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D C3B55_00962 iscA; Iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D C3B55_00731 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D C3B55_00973 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D C3B55_00625 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D C3B55_00911 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D C3B55_00707 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D C3B55_00971 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D C3B55_00169 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D C3B55_00755 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D C3B55_00497 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D C3B55_00113 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D C3B55_00226 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D C3B55_00235 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D C3B55_00378 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pade03012]
D C3B55_00374 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D C3B55_00791 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D C3B55_00770 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D C3B55_00275 tuf1; Elongation factor Tu K02358 tuf; elongation factor Tu
D C3B55_00274 fusA; Elongation factor G 1 K02355 fusA; elongation factor G
D C3B55_00408 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D C3B55_00768 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D C3B55_00409 prmC; Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D C3B55_00401 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D C3B55_00453 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D C3B55_00680 efp; Elongation factor P K02356 efp; elongation factor P
D C3B55_00500 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D C3B55_00546 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:pade03110]
D C3B55_00426 clpB; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D C3B55_00604 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D C3B55_00358 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D C3B55_00960 hscA; Chaperone protein HscA K04044 hscA; molecular chaperone HscA
D C3B55_00928 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C3B55_00359 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C3B55_00961 hscB; Co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D C3B55_00356 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D C3B55_00929 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D C3B55_00727 mucD; putative periplasmic serine endoprotease DegP-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D C3B55_00365 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D C3B55_00005 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D C3B55_00601 ppiD; Peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D C3B55_00119 surA; Chaperone SurA precursor K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D C3B55_00049 trxA; Thioredoxin-1 K03671 TXN; thioredoxin
D C3B55_00618 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D C3B55_00992 dsbA; Thiol:disulfide interchange protein DsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D C3B55_00828 dsbD; Thiol:disulfide interchange protein DsbD precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D C3B55_00671 dsbE; Thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:pade04131]
D C3B55_00957 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C3B55_00712 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C3B55_00925 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:pade03051]
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:pade03032]
D C3B55_00487 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D C3B55_00602 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D C3B55_00786 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D C3B55_00691 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D C3B55_01017 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C3B55_00241 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D C3B55_00111 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00757 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C3B55_01016 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C3B55_00333 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C3B55_00873 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C3B55_00486 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C3B55_00856 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D C3B55_00835 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D C3B55_00698 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C3B55_01015 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C3B55_00220 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D C3B55_00219 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D C3B55_00714 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pade03036]
D C3B55_00557 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C3B55_00602 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D C3B55_00786 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D C3B55_00691 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D C3B55_01017 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C3B55_00249 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D C3B55_00229 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D C3B55_00573 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D C3B55_00751 ftsB; Cell division protein FtsB K05589 ftsB; cell division protein FtsB
D C3B55_00582 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C3B55_00583 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D C3B55_00574 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D C3B55_00577 ftsW; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D C3B55_00572 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C3B55_00859 zipA; Cell division protein ZipA K03528 zipA; cell division protein ZipA
D C3B55_00540 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE
D C3B55_00227 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D C3B55_00734 ttgA; putative efflux pump periplasmic linker TtgA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D C3B55_00824 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D C3B55_00825 minD_2; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D C3B55_00826 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D C3B55_00533 mreB_2; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D C3B55_00532 mreC_2; Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D C3B55_00508 mreD_1; Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D C3B55_00531 mreD_2; Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D C3B55_00326 mrdB; Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D C3B55_00220 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D C3B55_00219 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D C3B55_00002 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D C3B55_00003 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D C3B55_00781 minD_1; Septum site-determining protein MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D C3B55_00993 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:pade03400]
D C3B55_00411 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B55_00732 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D C3B55_00783 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D C3B55_00075 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C3B55_00599 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C3B55_00858 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D C3B55_00306 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D C3B55_00807 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D C3B55_00593 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D C3B55_00016 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C3B55_00270 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C3B55_00271 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C3B55_00303 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C3B55_00027 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D C3B55_00713 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D C3B55_00924 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D C3B55_00757 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C3B55_01016 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C3B55_00333 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C3B55_00873 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C3B55_00486 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C3B55_00856 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00987 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D C3B55_00988 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D C3B55_00986 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D C3B55_00182 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D C3B55_00698 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C3B55_01015 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C3B55_00714 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D C3B55_00602 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D C3B55_00249 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D C3B55_00786 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D C3B55_00691 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D C3B55_00887 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C3B55_00473 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:pade03029]
D C3B55_00374 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D C3B55_00791 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D C3B55_00770 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D C3B55_00275 tuf1; Elongation factor Tu K02358 tuf; elongation factor Tu
D C3B55_00274 fusA; Elongation factor G 1 K02355 fusA; elongation factor G
D C3B55_00556 era; GTPase Era K03595 era; GTPase
D C3B55_00132 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C3B55_00335 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C3B55_00917 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D C3B55_00181 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C3B55_00535 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D C3B55_00536 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D C3B55_00534 aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D C3B55_00308 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B55_00763 bamA; Outer membrane protein assembly factor BamA precursor K07277 SAM50; outer membrane protein insertion porin family
D C3B55_00358 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D C3B55_00356 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D C3B55_00928 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C3B55_00929 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D C3B55_00359 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C3B55_00964 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C3B55_00961 hscB; Co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D C3B55_00618 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D C3B55_00781 minD_1; Septum site-determining protein MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D C3B55_00974 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C3B55_01021 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pade02000]
D C3B55_00210 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D C3B55_00136 apxIB; Toxin RTX-I translocation ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D C3B55_00544 bacA; Vitamin B12 transport ATP-binding protein BacA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D C3B55_00718 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D C3B55_00059 potF; Putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D C3B55_00062 ydcV; Inner membrane ABC transporter permease protein YdcV K11074 potI; putrescine transport system permease protein
D C3B55_00061 potH; Putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein
D C3B55_00060 potA; Spermidine/putrescine import ATP-binding protein PotA K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D C3B55_00518 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D C3B55_00519 mlaE; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D C3B55_00520 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D C3B55_00517 Toluene tolerance, Ttg2 K07323 mlaC; phospholipid transport system substrate-binding protein
D C3B55_00516 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D C3B55_00899 argT; Lysine-arginine-ornithine-binding periplasmic protein precursor K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D C3B55_00897 occM; Octopine transport system permease protein OccM K10023 aotM; arginine/ornithine transport system permease protein
D C3B55_00898 hisQ; Histidine transport system permease protein HisQ K10024 aotQ; arginine/ornithine transport system permease protein
D C3B55_00896 hisP; Histidine transport ATP-binding protein HisP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D C3B55_00616 yfmC; Fe(3+)-citrate-binding protein YfmC precursor K23181 fecB; ferric citrate transport system substrate-binding protein
D C3B55_00614 fecD; Fe(3+) dicitrate transport system permease protein FecD K23182 fecD; ferric citrate transport system permease protein
D C3B55_00615 fecC; Fe(3+) dicitrate transport system permease protein FecC K23183 fecC; ferric citrate transport system permease protein
D C3B55_00613 yusV; putative siderophore transport system ATP-binding protein YusV K23184 fecE; ferric citrate transport system ATP-binding protein [EC:7.2.2.18]
D C3B55_00998 znuB; High-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D C3B55_00997 znuC; Zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D C3B55_00842 tagG; Teichoic acid translocation permease protein TagG K09690 wzm; homopolymeric O-antigen transport system permease protein
D C3B55_00843 tagH; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D C3B55_00561 lptF; Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D C3B55_00560 lptG; Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D C3B55_00524 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D C3B55_00708 lolC_1; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D C3B55_00710 lolC_2; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D C3B55_00709 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D C3B55_00674 ccmC; Heme exporter protein C K02195 ccmC; heme exporter protein C
D C3B55_00675 ccmB; Heme exporter protein B K02194 ccmB; heme exporter protein B
D C3B55_00676 ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D C3B55_00643 yadH; Inner membrane transport permease YadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D C3B55_00644 drrA; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C3B55_00737 kgtP; Alpha-ketoglutarate permease K02625 pcaT; MFS transporter, MHS family, dicarboxylic acid transporter PcaT
D C3B55_00815 hcaT; putative 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D C3B55_00525 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D C3B55_00463 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D C3B55_00023 corC_1; Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C3B55_00861 oprF; Outer membrane porin F precursor K03286 TC.OOP; OmpA-OmpF porin, OOP family
D C3B55_00135 bepC; Outer membrane efflux protein BepC precursor K12543 lapE; outer membrane protein, adhesin transport system
D C3B55_00736 arpC; Antibiotic efflux pump outer membrane protein ArpC precursor K18139 oprM; outer membrane protein, multidrug efflux system
D C3B55_00763 bamA; Outer membrane protein assembly factor BamA precursor K07277 SAM50; outer membrane protein insertion porin family
D C3B55_00952 bamB; Outer membrane protein assembly factor BamB precursor K17713 bamB; outer membrane protein assembly factor BamB
D C3B55_00424 bamD; Outer membrane protein assembly factor BamD precursor K05807 bamD; outer membrane protein assembly factor BamD
D C3B55_00355 bamE; Outer membrane protein assembly factor BamE precursor K06186 bamE; outer membrane protein assembly factor BamE
D C3B55_00523 lptA; Lipopolysaccharide export system protein LptA precursor K09774 lptA; lipopolysaccharide export system protein LptA
D C3B55_00522 lipopolysaccharide exporter periplasmic protein K11719 lptC; lipopolysaccharide export system protein LptC
D C3B55_00120 lptD; LPS-assembly protein LptD precursor K04744 lptD; LPS-assembly protein
D C3B55_00334 LPS-assembly lipoprotein RlpB K03643 lptE; LPS-assembly lipoprotein
D C3B55_00337 corC_2; Magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D C3B55_00735 ttgB; putative efflux pump membrane transporter TtgB K18138 acrB; multidrug efflux pump
D C3B55_00633 rhtA; Threonine/homoserine exporter RhtA K11939 rhtA; inner membrane transporter RhtA
D C3B55_00739 pitA; Low-affinity inorganic phosphate transporter 1 K16322 pit; low-affinity inorganic phosphate transporter
D C3B55_00194 putP; Sodium/proline symporter K11928 putP; sodium/proline symporter
D C3B55_00191 nhaP2; K(+)/H(+) antiporter NhaP2 K11105 cvrA; potassium/hydrogen antiporter
D C3B55_00348 yicO; Putative permease YicO K06901 pbuG; adenine/guanine/hypoxanthine permease
D C3B55_00621 sdaC; Serine transporter K03837 sdaC; serine transporter
D C3B55_00418 murJ; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D C3B55_00903 argO; Arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO
D C3B55_00577 ftsW; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D C3B55_00137 prsE; Type I secretion system membrane fusion protein PrsE K12542 lapC; membrane fusion protein, adhesin transport system
D C3B55_00734 ttgA; putative efflux pump periplasmic linker TtgA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D C3B55_00672 ccmF; Cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:pade02044]
D C3B55_00136 apxIB; Toxin RTX-I translocation ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D C3B55_00137 prsE; Type I secretion system membrane fusion protein PrsE K12542 lapC; membrane fusion protein, adhesin transport system
D C3B55_00135 bepC; Outer membrane efflux protein BepC precursor K12543 lapE; outer membrane protein, adhesin transport system
D C3B55_00085 YGGT family protein K02221 yggT; YggT family protein
D C3B55_00920 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C3B55_00969 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C3B55_00264 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C3B55_00968 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C3B55_00369 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D C3B55_00297 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C3B55_00943 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D C3B55_00970 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C3B55_01021 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:pade02042]
D C3B55_00023 corC_1; Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:pade02022]
D C3B55_00147 envZ; Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D C3B55_00146 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D C3B55_00545 hypothetical protein K15012 regA; two-component system, response regulator RegA
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pade04812]
D C3B55_00533 mreB_2; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D C3B55_00572 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C3B55_00573 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D C3B55_00824 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D C3B55_00825 minD_2; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D C3B55_00826 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:pade04147]
D C3B55_00655 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D C3B55_00752 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C3B55_00712 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C3B55_00103 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C3B55_00925 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C3B55_00928 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C3B55_00358 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D C3B55_00379 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C3B55_00947 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C3B55_00275 tuf1; Elongation factor Tu K02358 tuf; elongation factor Tu
D C3B55_00128 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D C3B55_00901 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C3B55_00098 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D C3B55_00498 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C3B55_00855 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D C3B55_00171 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D C3B55_00168 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C3B55_00046 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D C3B55_00248 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C3B55_00659 lpdG; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C3B55_00869 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D C3B55_00368 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:pade02048]
D C3B55_00572 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C3B55_00533 mreB_2; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D C3B55_00220 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D C3B55_00219 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D C3B55_00806 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C3B55_00730 cptB; Antitoxin CptB K09159 cptB; antitoxin CptB
D C3B55_00964 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:pade01504]
D C3B55_00734 ttgA; putative efflux pump periplasmic linker TtgA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D C3B55_00735 ttgB; putative efflux pump membrane transporter TtgB K18138 acrB; multidrug efflux pump
D C3B55_00736 arpC; Antibiotic efflux pump outer membrane protein ArpC precursor K18139 oprM; outer membrane protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pade03100]
D C3B55_00631 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C3B55_00805 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C3B55_00139 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00609 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00889 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00888 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C3B55_00427 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D C3B55_00796 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D C3B55_00550 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D C3B55_00404 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C3B55_00804 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C3B55_00591 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C3B55_00261 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C3B55_00608 tRNA-His K14226 tRNA-His; tRNA His
D C3B55_00133 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D C3B55_00607 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00475 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00972 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00370 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C3B55_00234 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D C3B55_00910 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C3B55_00935 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00371 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00109 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00399 tRNA-Met K14230 tRNA-Met; tRNA Met
D C3B55_00156 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D C3B55_00428 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C3B55_00723 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00890 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00865 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00469 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C3B55_00262 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00154 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00432 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C3B55_00263 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D C3B55_00260 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D C3B55_00795 tRNA-Val K14237 tRNA-Val; tRNA Val
D C3B55_00797 tRNA-Val K14237 tRNA-Val; tRNA Val
D C3B55_00256 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C3B55_00257 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C3B55_00630 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C3B55_00351 ssrA; transfer-messenger RNA, SsrA K15035 ssrA; transfer-messenger RNA
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A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D C3B55_00871 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D C3B55_00479 ahpC; Alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D C3B55_00772 fpr; Ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D C3B55_00336 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D C3B55_00070 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D C3B55_00872 ycfH; putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D C3B55_01008 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D C3B55_00780 fdxA; Ferredoxin-1 K05524 fdxA; ferredoxin
D C3B55_00963 iscU; NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D C3B55_00870 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D C3B55_00087 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D C3B55_00042 putative protoheme IX biogenesis protein K02498 hemY; HemY protein
D C3B55_00177 ubiB; putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D C3B55_00178 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D C3B55_00035 Membrane fusogenic activity K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
C 99999 Others
D C3B55_00567 estB; Carboxylesterase 2 K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D C3B55_00793 capB_2; Cold shock protein CapB K03704 cspA; cold shock protein
D C3B55_00745 capB_1; Cold shock protein CapB K03704 cspA; cold shock protein
D C3B55_00919 cspA; Major cold shock protein CspA K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D C3B55_00352 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D C3B55_00126 hypothetical protein K07397 yhfA; putative redox protein
D C3B55_00474 nfuA; Fe/S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D C3B55_00832 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D C3B55_00553 proY; Proline-specific permease ProY K03293 TC.AAT; amino acid transporter, AAT family
D C3B55_00022 alsT; Amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D C3B55_00656 brnQ; Branched-chain amino acid transport system 2 carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D C3B55_00908 yciB; putative intracellular septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
C 99995 Signaling proteins
D C3B55_00433 regulatory protein AmpE K03807 ampE; AmpE protein
D C3B55_00170 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
C 99992 Structural proteins
D C3B55_00456 lolA; Outer-membrane lipoprotein carrier protein precursor K03634 lolA; outer membrane lipoprotein carrier protein
D C3B55_00406 lolB; Outer-membrane lipoprotein LolB precursor K02494 lolB; outer membrane lipoprotein LolB
D C3B55_00673 ccmE; Cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D C3B55_00670 ccmH; Cytochrome c-type biogenesis protein CcmH precursor K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D C3B55_00955 rodZ; Cytoskeleton protein RodZ K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D C3B55_00905 Imelysin K07231 K07231; putative iron-regulated protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D C3B55_00799 cvpA; Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D C3B55_00130 erpA; Iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D C3B55_00930 phage T7 F exclusion suppressor FxsA K07113 fxsA; UPF0716 protein FxsA
D C3B55_00811 putative rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
C 99997 Function unknown
D C3B55_00423 hypothetical protein K06950 K06950; uncharacterized protein
D C3B55_00218 esterase YqiA K07000 K07000; uncharacterized protein
D C3B55_00385 hypothetical protein K07028 K07028; uncharacterized protein
D C3B55_00547 Sulfite exporter TauE/SafE K07090 K07090; uncharacterized protein
D C3B55_01020 yidD; Putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D C3B55_00909 YciI-like protein K09780 K09780; uncharacterized protein
D C3B55_00466 hypothetical protein K09791 K09791; uncharacterized protein
D C3B55_00429 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D C3B55_00542 hypothetical protein K09908 K09908; uncharacterized protein
D C3B55_00813 hypothetical protein K09924 K09924; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2024