+E Transcription factors KO
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Transcription Factors - Paenibacillus sp. FSL R7-0273
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D R70723_14110 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_23865 hypothetical protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_15625 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_08020 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_08065 hypothetical protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_08635 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_04570 hypothetical protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D R70723_07580 AraC family transcriptional regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D R70723_15055 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D R70723_03410 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D R70723_05285 Fe3+-hydroxamate ABC transporter substrate-binding protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D R70723_13255 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D R70723_11025 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D R70723_20525 hypothetical protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D R70723_13005 transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D R70723_09725 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_09815 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_20370 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_10870 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_02945 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D R70723_01090 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_23000 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D R70723_15135 hypothetical protein K07506 K07506; AraC family transcriptional regulator
D R70723_18965 hypothetical protein K07506 K07506; AraC family transcriptional regulator
D R70723_01325 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D R70723_09685 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D R70723_11495 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D R70723_16145 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D R70723_15235 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D R70723_22725 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D R70723_12565 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D R70723_18875 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D R70723_30535 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D R70723_05035 histidine kinase K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D R70723_25175 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_15710 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_16415 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_26680 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_31390 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_12420 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_27540 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_27650 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_13230 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_08230 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_13435 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_09040 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_03935 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_14255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_24220 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D R70723_25160 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D R70723_31365 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D R70723_24120 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D R70723_02015 LacI family transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D R70723_22830 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D R70723_32210 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D R70723_07290 hypothetical protein K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D R70723_23675 trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D R70723_07705 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D R70723_08840 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D R70723_01365 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D R70723_26990 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D R70723_04405 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D R70723_12920 transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D R70723_22760 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D R70723_25635 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D R70723_16810 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D R70723_14995 transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D R70723_11830 TetR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D R70723_11185 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D R70723_05650 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D R70723_26705 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D R70723_31255 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D R70723_02640 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D R70723_01445 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D R70723_20840 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D R70723_19685 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D R70723_22870 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D R70723_24170 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D R70723_18325 transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D R70723_16675 MarR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D R70723_11505 transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D R70723_31910 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D R70723_30735 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D R70723_04970 cobalamin-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D R70723_22035 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D R70723_14095 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D R70723_12120 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D R70723_22445 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D R70723_30925 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D R70723_28375 peptide ABC transporter substrate-binding protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D R70723_22710 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D R70723_23995 cAMP-binding protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D R70723_31340 hypothetical protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D R70723_25310 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D R70723_04490 Rrf2 family transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D R70723_15535 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D R70723_01880 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D R70723_01725 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
C PadR family
D R70723_20655 hypothetical protein K26741 ladR; PadR family transcriptional regulator, multidrug transcriptional repressor LadR
D R70723_01525 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D R70723_15005 DNA-binding protein K10947 K10947; PadR family transcriptional regulator
D R70723_12255 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D R70723_22400 manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D R70723_20220 CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D R70723_14465 CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D R70723_15610 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D R70723_12975 ABC transporter substrate-binding protein K11925 sgrR; SgrR family transcriptional regulator
D R70723_23065 cytidyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D R70723_01215 hypothetical protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D R70723_29310 transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D R70723_27530 transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D R70723_28000 transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D R70723_02325 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D R70723_00175 purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D R70723_05550 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D R70723_21155 REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D R70723_26715 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D R70723_10170 transcriptional regulator K07727 K07727; putative transcriptional regulator
D R70723_17380 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D R70723_17815 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
D R70723_14580 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D R70723_02875 DNA-binding protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D R70723_05515 antitoxin K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D R70723_21615 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D R70723_09765 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D R70723_08870 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D R70723_14910 transcription antiterminator BglG K03480 glcT; transcriptional antiterminator
D R70723_09180 PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
D R70723_08430 hypothetical protein K03483 mtlR; mannitol operon transcriptional activator
D R70723_26590 hypothetical protein K03491 licR; probable licABCH operon transcriptional regulator
D R70723_07285 hypothetical protein K03491 licR; probable licABCH operon transcriptional regulator
C Others
D R70723_01785 CsoR family transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D R70723_06950 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D R70723_21970 polyketide synthase regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D R70723_31150 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D R70723_08805 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D R70723_09615 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D R70723_00125 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D R70723_10410 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D R70723_00220 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D R70723_32500 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D R70723_32510 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D R70723_22205 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D R70723_25085 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D R70723_10620 hypothetical protein K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D R70723_29800 transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D R70723_20020 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D R70723_07135 phage-shock protein K03973 pspC; phage shock protein C
D R70723_00875 central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D R70723_21395 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D R70723_24440 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D R70723_24670 precorrin-3B C17-methyltransferase K06314 rsfA; prespore-specific regulator
D R70723_10715 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D R70723_24610 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0