+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas aeruginosa NCGM 1900

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NCGM1900_1673 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NCGM1900_5370 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NCGM1900_2029 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NCGM1900_0953 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NCGM1900_5906 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NCGM1900_2772 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E NCGM1900_4625 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NCGM1900_3122 mutT; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_3650 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_2229 mutT; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_5658 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_2799 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_6164 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NCGM1900_1673 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NCGM1900_2681 ada; putative methylated-DNA-protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NCGM1900_4369 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NCGM1900_5370 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NCGM1900_2029 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NCGM1900_4880 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E NCGM1900_0953 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NCGM1900_5906 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NCGM1900_0360 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NCGM1900_2772 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NCGM1900_3978 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NCGM1900_6175 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NCGM1900_0784 putative exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E NCGM1900_2551 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NCGM1900_5051 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NCGM1900_6352 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NCGM1900_0725 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E NCGM1900_3521 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E NCGM1900_3157 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E NCGM1900_3509 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E NCGM1900_3930 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E NCGM1900_6298 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCGM1900_1734 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCGM1900_6352 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E NCGM1900_5051 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NCGM1900_0689 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NCGM1900_0690 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NCGM1900_0721 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NCGM1900_6180 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NCGM1900_3303 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NCGM1900_2656 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E NCGM1900_5692 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E NCGM1900_2144 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NCGM1900_1203 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NCGM1900_0919 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E NCGM1900_2636 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NCGM1900_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NCGM1900_1143 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E NCGM1900_0973 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NCGM1900_3347 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NCGM1900_3060 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NCGM1900_4682 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NCGM1900_5048 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NCGM1900_5051 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NCGM1900_6298 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCGM1900_1734 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NCGM1900_3576 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein E NCGM1900_0727 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E NCGM1900_4753 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E NCGM1900_1645 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NCGM1900_2109 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E NCGM1900_2110 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E NCGM1900_2108 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E NCGM1900_2660 recA; recombinase A K03553 recA; recombination protein RecA E NCGM1900_1749 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E NCGM1900_1748 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NCGM1900_1750 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NCGM1900_5805 priA; primosome assembly protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E NCGM1900_3766 hypothetical protein K04067 priC; primosomal replication protein N'' E NCGM1900_2144 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NCGM1900_2107 sbcC; putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E NCGM1900_2106 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E NCGM1900_2660 recA; recombinase A K03553 recA; recombination protein RecA E NCGM1900_2452 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E NCGM1900_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E NCGM1900_6189 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NCGM1900_2551 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NCGM1900_2006 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E NCGM1900_5046 recR; recombination protein K06187 recR; recombination protein RecR E NCGM1900_5497 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E NCGM1900_3019 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC E NCGM1900_1749 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E NCGM1900_1748 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NCGM1900_1750 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E NCGM1900_2107 sbcC; putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E NCGM1900_2106 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E NCGM1900_2133 yjgR; hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E NCGM1900_6411 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E NCGM1900_4330 KU domain-containing protein K10979 ku; DNA end-binding protein Ku E NCGM1900_4345 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NCGM1900_3135 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NCGM1900_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NCGM1900_4287 pslN; hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F NCGM1900_3294 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NCGM1900_6192 hupA; HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F NCGM1900_1027 putative DNA binding protein K03530 hupB; DNA-binding protein HU-beta F NCGM1900_4695 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NCGM1900_2551 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NCGM1900_2006 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F NCGM1900_5046 recR; recombination protein K06187 recR; recombination protein RecR F NCGM1900_5051 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F NCGM1900_5592 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F NCGM1900_3747 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F NCGM1900_3142 himD; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F NCGM1900_2144 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F NCGM1900_2931 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NCGM1900_3750 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NCGM1900_0725 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F NCGM1900_3521 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F NCGM1900_3157 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F NCGM1900_3509 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NCGM1900_1795 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D NCGM1900_2660 recA; recombinase A K03553 recA; recombination protein RecA D NCGM1900_3298 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D NCGM1900_5497 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D NCGM1900_4604 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D NCGM1900_2098 hypothetical protein K14160 imuA; protein ImuA D NCGM1900_2099 hypothetical protein K14161 imuB; protein ImuB D NCGM1900_2100 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NCGM1900_3576 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein D NCGM1900_0727 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NCGM1900_4753 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NCGM1900_1645 hypothetical protein K03111 ssb; single-strand DNA-binding protein D NCGM1900_2661 recX; recombination regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NCGM1900_6136 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D NCGM1900_1564 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D NCGM1900_3010 lhr1; putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D NCGM1900_3122 mutT; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_3650 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_2229 mutT; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_5658 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_2799 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NCGM1900_6164 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NCGM1900_1438 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NCGM1900_6356 putative ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NCGM1900_1439 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024